PART I—FINANCIAL INFORMATION

Item 1. Financial Statements.

Semler Scientific, Inc.

Condensed Statements of Income

Unaudited

(In thousands of U.S. Dollars, except share and per share data)

(Unaudited) (Unaudited)
For the three months ended September 30 For the nine months ended September 30
2019 2018 2019 2018
Revenues $ 8,902 $ 5,579 $ 23,616 $ 15,526
Operating expenses:
Cost of revenues 974 615 2,755 1,999
Engineering and product development 617 587 1,777 1,443
Sales and marketing 2,345 1,798 6,626 5,283
General and administrative 1,855 1,033 4,798 2,908
Total operating expenses 5,791 4,033 15,956 11,633
Income from operations 3,111 1,546 7,660 3,893

Interest expense (2 ) (1 ) - (57 )
Related party interest expense - (74 ) - (206 )
Other expense (1 ) (3 ) (3 ) (4 )
Other expense (3 ) (78 ) (3 ) (267 )
Income before income taxes 3,108 1,468 7,657 3,626
Income tax (benefit) provision (4,671 ) - (4,594 ) -
Net income $ 7,779 $ 1,468 $ 12,251 $ 3,626
Net income per share:
Basic $ 1.20 $ 0.24 $ 1.91 $ 0.60
Diluted $ 0.96 $ 0.19 $ 1.51 $ 0.48
Weighted average number of shares used in computing: basic and diluted income per share
Basic 6,492,501 6,086,489 6,410,588 5,998,460
Diluted 8,108,053 7,927,788 8,121,996 7,611,961


	For the three months ended September 30				For the nine months ended September 30
	2020		2019		2020		2019
Revenues	$	10,727	$	8,902	$	26,530	$	23,616
Operating expenses:
Cost of revenues		820		974		2,370		2,755
Engineering and product development		672		617		2,277		1,777
Sales and marketing		2,116		2,345		7,283		6,626
General and administrative		1,564		1,855		4,634		4,798
Total operating expenses		5,172		5,791		16,564		15,956
Income from operations		5,555		3,111		9,966		7,660
Interest income (expense)		2		(2)		5		—
Other income (expense)		38		(1)		64		(3)
Other expense		40		(3)		69		(3)
Pre-tax net income	$	5,595	$	3,108	$	10,035	$	7,657
Income tax provision (benefit)		729		(4,671)		1,421		(4,594)
Net income		4,866		7,779		8,614		12,251
Net income per share, basic	$	0.74	$	1.20	$	1.31	$	1.91
Weighted average number of shares used in computing basic income per share		6,578,808		6,492,501		6,553,522		6,410,588
Net income per share, diluted	$	0.61	$	0.96	$	1.07	$	1.51
Weighted average number of shares used in computing diluted income per share		8,038,513		8,108,053		8,046,759		8,121,996

See accompanying notes to unaudited condensed financial statements.

Table of Contents

Semler Scientific, Inc.

Condensed Balance Sheets

(In thousands of U.S. Dollars, except share and per share data)

(Unaudited)
September 30,
December 31,
2019 2018
Assets

Current Assets:
Cash $ 8,542 $ 3,284
Trade accounts receivable, net of allowance for doubtful accounts of $36 and $52, respectively 3,271 2,801
Prepaid expenses and other current assets 274 153
Total current assets 12,087 6,238

Assets for lease, net 1,826 1,243
Property and equipment, net 220 223
Long-term deposits 15 15
Long-term deferred tax assets 4,709 -
Total assets $ 18,857 $ 7,719

Liabilities and Stockholders' Equity

Current liabilities:
Accounts payable $ 669 $ 280
Accrued expenses 2,909 2,797
Deferred revenue 1,169 435
Total current liabilities 4,747 3,512

Long-term liabilities:

Deferred rent 8 11
Total long-term liabilities 8 11

Stockholders' equity:
Common stock, $0.001 par value; 50,000,000 shares authorized; 6,552,916 and 6,349,985 shares issued, and 6,527,916 and 6,324,985 outstanding (treasury shares of 25,000 and 25,000), respectively 7 6
Additional paid-in capital 23,262 25,608
Accumulated deficit (9,167 ) (21,418 )

Total stockholders' equity 14,102 4,196

Total liabilities and stockholders' equity $ 18,857 $ 7,719


	(unaudited)
	September 30,		December 31,
	2020		2019
Assets
Current Assets:
Cash	$	16,793	$	7,741
Trade accounts receivable, net of allowance for doubtful accounts of $56 and $36 respectively		3,455		3,486
Prepaid expenses and other current assets		1,530		216
Total current assets		21,778		11,443
Assets for lease, net		1,802		2,079
Property and equipment, net		258		249
Notes receivable		500		—
Other non-current assets		432		15
Long-term deferred tax assets		3,277		4,501
Total assets	$	28,047	$	18,287

Liabilities and Stockholders’ Equity

Current liabilities:
Accounts payable	$	336	$	338
Accrued expenses		4,277		3,914
Deferred revenue		960		955
Other short-term liabilities		78		—
Total current liabilities		5,651		5,207

Long-term liabilities:
Other long-term liabilities		345		7
Total long-term liabilities		345		7
Stockholders’ equity:
Common stock, $0.001 par value; 50,000,000 shares authorized; 6,640,833, and 6,556,221 shares issued, and 6,615,833 and 6,531,221 shares outstanding (treasury shares of 25,000, and 25,000, respectively)		7		7
Additional paid-in capital		19,764		19,400
Retained earnings (accumulated deficit)		2,280		(6,334)

Total stockholders’ equity		22,051		13,073

Total liabilities and stockholders’ equity	$	28,047	$	18,287

See accompanying notes to unaudited condensed financial statements.

Table of Contents

Semler Scientific, Inc.

Statements of ~~Stockholders'~~Stockholders’ Equity ~~(Deficit)~~

~~(In~~Unaudited

(In thousands of U.S. Dollars, except share and per share data)


	For the Three Months Ended September 30, 2019
	Common Stock			Treasury Stock			Additional
		Common Stock					Paid-In		Accumulated		Total Stockholder’s
	Shares Issued	Amount		Shares	Amount		Capital		Deficit		Equity
Balance at June 30, 2019	6,484,414	$	6	(25,000)	$	0	$	23,161	$	(16,946)	$	6,221
Warrant Exercises	13,670		0	0		0		0		0		0
Stock Option Exercises	54,832		1	0		0		15		0		16
Stock-based Compensation	0		0	0		0		86		0		86
Net income	0		0	0		0		0		7,779		7,779
Balance at September 30, 2019	6,552,916	$	7	(25,000)	$	0	$	23,262	$	(9,167)	$	14,102

	For the Three Months Ended September 30, 2020
	Common Stock			Treasury Stock			Additional
		Common Stock					Paid-In		Retained Earnings /		Total Stockholder’s
	Shares Issued	Amount		Shares	Amount		Capital		(Accumulated Deficit)		Equity
Balance at June 30, 2020	6,588,176	$	7	(25,000)	$	0	$	19,598	$	(2,586)	$	17,019
Employee Stock Grant	641		0	0		0		0		0		0
Stock Option Exercises	52,016		0	0		0		104		0		104
Stock-based Compensation	0		0	0		0		62		0		62
Net income	0		0	0		0		0		4,866		4,866
Balance at September 30, 2020	6,640,833	$	7	(25,000)	$	0	$	19,764	$	2,280	$	22,051

	For the Nine Months Ended September 30, 2019
	Common Stock			Treasury Stock			Additional
		Common Stock					Paid-In		Accumulated		Total Stockholder’s
	Shares Issued	Amount		Shares	Amount		Capital		Deficit		Equity
Balance at December 31, 2018	6,349,985	$	6	(25,000)	$	0	$	25,608	$	(21,418)	$	4,196
Warrant Re-purchase	0		0	0		0		(2,687)		0		(2,687)
Warrant Exercises	36,197		0	0		0		0		0		0
Stock Option Exercises	166,734		1	0		0		59		0		60
Stock-based Compensation	0		0	0		0		282		0		282
Net income	0		0	0		0		0		12,251		12,251
Balance at September 30, 2019	6,552,916	$	7	(25,000)	$	0	$	23,262	$	(9,167)	$	14,102

	For the Nine Months Ended September 30, 2020
	Common Stock			Treasury Stock			Additional
		Common Stock					Paid-In		Retained Earnings /		Total Stockholder’s
	Shares Issued	Amount		Shares	Amount		Capital		(Accumulated Deficit)		Equity
Balance at December 31, 2019	6,556,221		7	(25,000)		0		19,400		(6,334)		13,073
Employee Stock Grant	641		0	0		0		0		0		0
Stock Option Exercises	83,971		0	0		0		174		0		174
Stock-based Compensation	0		0	0		0		190		0		190
Net income	0		0	0		0		0		8,614		8,614
Balance at September 30, 2020	6,640,833	$	7	(25,000)	$	0	$	19,764	$	2,280	$	22,051

~~For the Three Months Ended September 30, 2018~~

Common Stock Treasury Stock
Shares
Issued Common
Stock
Amount Shares Amount Additional
Paid-In
Capital Accumulated
Deficit Total
Stockholder's
Equity
Balance at June 30, 2018 6,048,397 $ 6 (25,000 ) $ - $ 24,484 $ (24,274 ) $ 216

Issuance of Common Stock 12,943 - - - 294 - 294

Warrant Exercises 26,139 - - - - - -

Stock Option Exercises 110,815 - - - 195 - 195

Stock-based Compensation - - - - 139 - 139

Net income for three months ended September 30, 2018 - - - - - 1,468 1,468

Balance at September 30, 2018 6,198,294 $ 6 (25,000 ) $ - $ 25,112 $ (22,806 ) $ 2,312

~~For the Three Months Ended September 30, 2019~~

Common Stock Treasury Stock
Shares
Issued Common
Stock
Amount Shares Amount Additional
Paid-In
Capital Accumulated
Deficit Total
Stockholder's
Equity
Balance at June 30, 2019 6,484,414 $ 6 (25,000 ) $ - $ 23,161 $ (16,946 ) $ 6,221

Warrant Exercises 13,670 - - - - - -

Stock Option Exercises 54,832 1 - - 15 - 16

Stock-based Compensation - - - - 86 - 86

Net income for three months ended September 30, 2019 - - - - - 7,779 7,779

Balance at September 30, 2019 6,552,916 $ 7 (25,000 ) $ - $ 23,262 $ (9,167 ) $ 14,102

~~See accompanying notes to unaudited condensed financial statements.~~

Table of Contents

~~For the Nine Months Ended September 30, 2018~~

Common Stock Treasury Stock Total
Shares
Issued Common
Stock
Amount Shares Amount Additional
Paid-In
Capital Accumulated
Deficit Stockholder's
Equity /
(Deficit)
Balance at December 31, 2017 5,902,244 $ 6 (25,000 ) $ - $ 23,843 $ (26,432 ) $ (2,583 )

Issuance of Common Stock 12,943 - - - 294 - 294

Warrant Exercises 66,914 - - - 64 - 64

Stock Option Exercises 216,193 - - - 440 - 440

Stock-based Compensation - - - - 471 - 471

Net income for nine months ended September 30, 2018 - - - - - 3,626 3,626

Balance at September 30, 2018 6,198,294 $ 6 (25,000 ) $ - $ 25,112 $ (22,806 ) $ 2,312

~~For the Nine Months Ended September 30, 2019~~

Common Stock Treasury Stock
Shares
Issued Common
Stock
Amount Shares Amount Additional
Paid-In
Capital Accumulated
Deficit Total
Stockholder's
Equity
Balance at December 31, 2018 6,349,985 6 (25,000 ) - 25,608 (21,418 ) 4,196

Warrant Repurchase - - - - (2,687 ) - (2,687 )

Warrant Exercises 36,197 - - - - - -

Stock Option Exercises 166,734 1 - - 59 - 60

Stock-based Compensation - - - - 282 - 282

Net income for nine months ended September 30, 2019 - - - - - 12,251 12,251

Balance at September 30, 2019 6,552,916 $ 7 (25,000 ) $ - $ 23,262 $ (9,167 ) $ 14,102

~~See accompanying notes to unaudited condensed financial statements.~~

Semler Scientific, Inc.

Condensed Statements of Cash Flows

Unaudited

(In thousands of U.S. Dollars)

(Unaudited)
Nine months ended September 30
2019 2018
CASH FLOWS FROM OPERATING ACTIVITIES:
Net income $ 12,251 $ 3,626

Reconciliation of Net Income to Net Cash Provided by Operating Activities:
Amortization of debt discount - 22
Accretion of non-cash interest - 200
Depreciation 470 373
Deferred income tax (4,709 ) -
Loss on disposal of property and equipment - 2
Loss on disposal of assets for lease 159 150
Bad debt expense 42 39
Stock-based compensation expense 282 470
Changes in Operating Assets and Liabilities:
Trade accounts receivable (512 ) (1,165 )
Prepaid expenses and other assets (122 ) (60 )
Accounts payable 389 (237 )
Accrued expenses 109 (609 )
Deferred revenue 734 (160 )
Net Cash Provided by Operating Activities 9,093 2,651

CASH FLOWS FROM INVESTING ACTIVITIES:
Additions to property and equipment (106 ) (131 )
Proceeds from disposal of property and equipment - 1
Purchase of assets for lease, net (1,102 ) (323 )
Net Cash Used in Investing Activities (1,208 ) (453 )

CASH FLOWS FROM FINANCING ACTIVITIES:
Repurchase of warrants (2,687 ) -
Exercise of warrants - 64
Exercise of stock options 60 440
Payments of loans payable - (1,072 )
Net Cash Used in Financing Activities (2,627 ) (568 )

INCREASE IN CASH 5,258 1,630
CASH, BEGINNING OF PERIOD 3,284 1,457

CASH, END OF PERIOD $ 8,542 $ 3,087
Cash paid for interest $ - $ 192
Retirement of related party loans payable through common stock issuance $ - $ 294


	For the nine months ended September 30
	2020		2019
CASH FLOWS FROM OPERATING ACTIVITIES:
Net Income	$	8,614	$	12,251

Reconciliation of Net Income to Net Cash Provided by Operating Activities:
Depreciation		412		470
Deferred tax expense		1,224		(4,709)
Loss on disposal of assets for lease		178		159
Bad debt expense		43		42
Stock-based compensation expense		190		282
Changes in Operating Assets and Liabilities:
Trade accounts receivable		(13)		(512)
Prepaid expenses and other assets		(1,315)		(122)
Other non-current assets		(416)		—
Accounts payable		(2)		389
Accrued expenses		264		109
Deferred revenue		5		734
Other current and non-current liabilities		416		—
Net Cash Provided by Operating Activities		9,600		9,093

CASH FLOWS FROM INVESTING ACTIVITIES:
Additions to property and equipment		(103)		(106)
Notes receivable		(400)		—
Purchase of assets for lease		(219)		(1,102)
Net Cash Used in Investing Activities		(722)		(1,208)

CASH FLOWS FROM FINANCING ACTIVITIES:
Re-purchase of warrants		—		(2,687)
Exercise of stock options		174		60
Net Cash Provided by (Used in) Financing Activities		174		(2,627)
INCREASE IN CASH		9,052		5,258
CASH, BEGINNING OF PERIOD		7,741		3,284
CASH, END OF PERIOD	$	16,793	$	8,542

See accompanying notes to unaudited condensed financial statements

~~Semler Scientific, Inc.~~

~~Notes to Condensed Financial Statements~~

~~Unaudited~~

~~(In thousands of U.S. Dollars, except share and per share data)~~

Table of Contents

~~Basis of Presentation~~

Semler Scientific, Inc.

Notes to Condensed Financial Statements

Unaudited

(In thousands of U.S. Dollars, except share and per share data)

1. Basis of Presentation

Semler Scientific, Inc., a Delaware corporation (“Semler” or “the Company”), prepared the unaudited interim financial statements included in this report in accordance with United States generally accepted accounting principles (“GAAP”) and applicable rules and regulations of the Securities and Exchange Commission (“SEC”) for interim financial reporting. Certain information and note disclosures normally included in the financial statements prepared in accordance with GAAP have been condensed or omitted pursuant to such rules and regulations. As such, the information included in this quarterly report on Form 10-Q should be read in conjunction with the audited financial statements and notes thereto included in the Company’s annual report on Form 10-K for the year ended December 31, ~~2018~~2019 filed with the SEC on March ~~7, 2019~~9, 2020 (the “Annual Report”). In the opinion of management, these financial statements include all adjustments (consisting of normal recurring adjustments) necessary for a fair statement of the financial position, results of operations and cash flows for the periods presented. The results of operations for the interim periods shown in this report are not necessarily indicative of the results that may be expected for any future period, including the full year.

On January 30, 2020, the World Health Organization (“WHO”) declared the recent novel coronavirus (COVID-19) outbreak a global health emergency, which prompted national, state and local governments to begin putting actions in place to slow the spread of COVID-19. In March 2020, the WHO classified the COVID-19 outbreak as a pandemic. The outbreak of COVID-19 resulted in travel restrictions, quarantines, “stay-at-home” and “shelter-in-place” orders and extended shutdown of certain businesses around the world. While restrictions began to ease in the second quarter and activities began to resume, recent outbreaks could lead to restrictions being reimplemented. For the nine months ended September 30, 2020, the Company’s revenues, primarily from variable-fee licenses, were negatively impacted by the COVID-19 pandemic. For the three months ended September 30, 2020, the Company’s revenues, primarily from variable-fee licenses, rebounded to and even exceeded pre-COVID-19 levels. The extent and duration of the pandemic is unknown, and the future effects on the Company’s business are uncertain and difficult to predict. The Company is continuing to monitor the events and circumstances surrounding the COVID-19 pandemic, which may require adjustments to the Company’s estimates and assumptions in the future.

Recently Issued Accounting Pronouncements

Accounting Pronouncements Recently Adopted

In ~~May 2014,~~November 2019, the Financial Accounting Standards Board (“FASB”) issued Accounting ~~Standard~~Standards Update (“ASU”) No. ~~2014-09,~~2019-08 – Compensation – Stock Compensation (Topic 718) and Revenue from Contracts with ~~Customers (“ASU No. 2014-09”)~~Customer (Topic 606). The ~~amendment in this ASU provides guidance~~amendments on the revenue recognition to depict the transfer of promised goods or services to customers in an amount that reflects the consideration to which the entity expects to be entitled in exchange for those goods or services. The core principle of this update ~~provides guidance~~require that an entity measure and classify share-based payment awards granted to ~~identify the performance obligations under the contract(s) with~~ a customer ~~and how to allocate~~by applying the guidance in Topic 718. The amount recorded as a reduction in the transaction price toshould be based on the ~~performance obligations in~~grant-date fair value of the ~~contract. It further provides guidance to recognize revenue when (or as) the entity satisfies a performance obligation.~~share-based payment award. This standard ~~replaced most existing revenue recognition guidance. On August 8, 2015,~~is effective for the FASB issued ASU 2015-14, which deferred the effective date of ASU No. 2014-09 by one year, and permits early adoption as long as the adoption date is not before the original public entity effective date. Since the issuance of ASU 2014-09, the FASB has issued several amendments that clarify certain points,Company’s annual periods beginning after December 15, 2019, including ASU 2016-08, Principal versus Agent Considerations (Reporting Revenue Gross versus Net), ASU 2016-10, Revenue from Contracts with Customers (Topic 606), Identifying Performance Obligations and Licensing (“Topic 606”), ASU 2016-11, Rescission of SEC Guidance Because of Accounting Standards Updates 2014-09 and 2014-16 Pursuant to Staff Announcements at the March 3, 2016 Emerging Issues Task Force Meeting, and ASU 2016-12, Narrow-Scope Improvements and Practical Expedients, and ASU No. 2016-20, Technical Corrections and Improvements to Topic 606. The updated revenue standard allows two methods of adoption: (1) retrospectively to each prior period presented (“full retrospective method”), or (2) retrospectively with the cumulative effect recognized in retained earnings as of the date of adoption (“modified retrospective method”). The new standard further requires new disclosures about contracts with customers, including the significant judgments the company has made when applying the guidance.interim periods within those fiscal years. The Company adopted the new standard ~~effective~~on January 1, ~~2019, using the modified retrospective method. The Company~~2020 and determined that the adoption of this new ~~standard~~accounting guidance did not have a material impact on its financial statements.

Topic 606 affects revenue recognition for the Company’s variable license fee contracts, which represents approximately $2,660 and $1,375 of revenues for the three-month periods ended September 30, 2019 and 2018, respectively, and approximately $6,166 and $3,384 of revenues for the nine-month periods ended September 30, 2019 and 2018, respectively. Essentially all of the variable license fee contracts are with large healthcare organizations. The remainder of the revenue is earned from leasing the Company's testing product for a fixed monthly fee, which is not subject to Topic 606. It was determined that the impact of the new standard has no effect on the way revenue was currently being recognized. Reusable hardware equipment or accessories may be provided to a customer for a set price and then use of the associated software is billed to the customer monthly based on volume of use. Under this scenario, revenue is recognized when and only when the customer uses the product. The Company is rendering a service and recognizes revenue in direct proportion to how much service is rendered. The sale of the equipment or accessories is recognized as hardware sales upon shipment to the customer. The initial contract is for a specified time period with automatic renewal each period thereafter until canceled. In ~~case there is a violation of any term of the contract, the Company may deactivate the service remotely, so that the customer cannot continue to use the product.~~

~~Semler Scientific, Inc.~~

~~Notes to Condensed Financial Statements~~

~~Unaudited~~

~~(In thousands of U.S. Dollars, except share and per share data)~~

~~Accounting Pronouncements Not Yet Adopted~~

In January 2016, the FASB issued ASU No. 2016-02, Leases (Topic 842) (“ASU No. 2016-02”). Under the new guidance in ASU No. 2016-02, lessees will be required to recognize the following for all leases (with the exception of short-term leases) at the commencement date: 1) A lease liability, which is a lessee’s obligation to make lease payments arising from a lease, measured on a discounted basis; and 2) A right-of-use asset, which is an asset that represents the lessee’s right to use, or control the use of, a specified asset for the lease term. Under the new guidance, lessor accounting is largely unchanged, however, certain targeted improvements were made. ASU No. 2016-02 also simplifies the accounting for sale and leaseback transactions. Lessees (for capital and operating leases) and lessors (for sales-type, direct financing, and operating leases) must apply a modified retrospective transition approach for leases existing at, or entered into after, the beginning of the earliest comparative period presented in the financial statements. Lessees and lessors may not apply a full retrospective transition approach. The new standard also requires expanded disclosures regarding leasing arrangements. In JulyJune 2018, the FASB issued ASU No. ~~2018-11, Leases~~2018-07, Compensation—Stock Compensation (Topic ~~842)~~718): ~~Targeted~~ Improvements (“to Nonemployee Share-Based Payment Accounting. This ASU ~~No. 2018-11”). ASU No. 2018-11 provides another transition method in addition~~expands the scope of Topic 718 to ~~the existing transition method by allowing entities to initially~~include share-based payment transactions for acquiring goods and services from nonemployees. An entity should apply the ~~new leases standard at the adoption date and recognize a cumulative effect adjustment~~requirements of Topic 718 to ~~the opening balance of retained earnings in the period of adoption. This ASU also provides further~~nonemployee awards except for specific guidance on ~~lessors accounting policy election~~inputs to ~~not separate non-lease components from~~an option pricing model and the ~~associated lease components and limits this~~attribution of costs. The ASU specifies that Topic 718 applies to ~~circumstances~~all share-based payment transactions in which ~~the non-lease component~~a grantor acquires goods or ~~components otherwise would~~services to be ~~accounted for under the new revenue guidance and both (1) the timing and pattern of transfer are the same~~used or consumed in a grantor’s own operations by issuing share-based payment awards. This standard is effective for the ~~non-lease component(s) and associated lease component, and (2) the lease component, if accounted for separately, would be classified as a an operating lease. In~~Company’s annual periods beginning after December 2018, the FASB issued ASU No. 2018-20, Leases (Topic 842): Narrow-Scope Improvements for Lessors. This ASU provide narrow scope improvements for lessor accounting by permitting lessors, as an accounting policy election, to treat certain sales taxes and other similar taxes as lessee costs, to exclude lessor costs paid by lessees directly to third parties from variable payments, and clarify the accounting by lessors for variable payments that related to both a lease component and a non-lease component. In January15, 2019, the FASB issued ASU No. 2019-01, Leases Codification Improvements, which reinstates the exception for lessors that are not manufacturers or dealers for determining fair value of the leased property as the underlying asset’s cost, clarifies the presentation on the statement of cash flows for sales type and direct financing leases for lessors that are depository and lending institutions and clarifies the transition disclosures related to accounting changes and error corrections in the year of adoption of the ASU.including interim periods within those fiscal years. The Company ~~will adopt~~adopted the new standard on December 31, 2019 upon expiration of their status as an emerging growth company using the modified retrospective approach and the optional transition method under ASU No. 2018-11. The Company evaluated the impact of the new accounting standard on its lease contracts with customers and determined that there will be no impact to the accounting and revenue recognition under these lease contracts with customers. As for leases for which the Company is the lessee, management reviewed its lease obligationsJanuary 1, 2020 and determined that the Company generally does not enter into long-term lease obligations with the exception of its office leases. The Company is a lessee on certain real estate leases that will need to be reported as right of use assets and liabilities related to these leases in the Company’s financial statements on the date of adoption. The Company is in the process of determining the amounts to be recorded on adoption related to these leases and does not anticipate that adoption of this this new ~~standard will~~accounting guidance did not have a material impact on its financial statements.

In August 2018, the FASB issued ASU No. 2018-13, Fair Value Measurement (Topic 820): Disclosure Framework—Changes to the Disclosure Requirements for Fair Value Measurement. The amendments in this ASU modify the disclosure requirements on fair value measurements removing the requirements to disclosure amount of and reasons for transfers between Level 1 and Level 2 of the fair value hierarchy, the policy for timing of transfers between levels, and the valuation processes for Level 3 fair value measurements. In addition, it modified certain disclosures related to Level 3 fair value measurements and added additional disclosures regarding the range and weighted average of significant unobservable inputs used to develop Level 3 fair value measurements and the changes in unrealized gains and losses for the period included in other comprehensive income for recurring Level 3 fair value measurements held at the end of the reporting period. This update is effective for the Company’s annual periods beginning after December 15, 2019,

Table of Contents

Semler Scientific, Inc.

Notes to Condensed Financial Statements

Unaudited

(In thousands of U.S. Dollars, except share and per share data)

including interim periods within those fiscal years. The Company adopted the new standard on January 1, 2020 and determined that the adoption of this this new accounting guidance did not have a material impact on its financial statements.

Accounting Pronouncements Not Yet Adopted

In June 2016, the FASB issued ASU No. 2016-13, Financial Instruments – Credit Losses (Topic 326): Measurement of Credit Losses on Financial Instruments (“Topic 326”). This ASU requires timelier recording of credit losses on loans and other financial instruments held. Instead of reserves based on a current probability analysis, Topic 326 requires the measurement of all expected credit losses for financial assets held at the reporting date based on historical experience, current conditions, and reasonable and supportable forecasts. All organizations will now use forward-looking information to better inform their credit loss estimates. Topic 326 requires enhanced disclosures regarding significant estimates and judgments used in estimating credit losses, as well as the credit quality and underwriting standards of an organization’s portfolio. These disclosures include qualitative and quantitative requirements that provide information about the amounts recorded in the financial statements. In addition, Topic 326 amends the accounting for credit losses on available-for-sale debt securities and purchased financial assets with credit deterioration. In April 2019, the FASB issued ~~ASU2019-04~~ ASU No. 2019-04, Codification Improvements to Topic 326 Financial Instruments—Credit Losses, Topic 815, Derivatives and Hedging, and Topic 825, Financial Instruments, to introduce amendments which will affect the recognition and measurement of financial instruments, including derivatives and hedging. In May 2019, the FASB issued ASU No. 2019-05, Financial Instruments – Credit Losses (Topic 326); Targeted Transition ~~Relief.~~Relief. The amendments in this ASU provide entities that have certain instruments within the scope of Subtopic 326-20 with an option to irrevocably elect the fair value option in Subtopic 825-10, applied on an instrument-by-instrument basis for eligible instruments upon adoption of Topic 326. This standard and related amendments are effective for the Company’s fiscal years beginning after December 15, ~~2019,~~2022, including interim periods within those fiscal years. The Company will adopt the new standard in the first quarter of fiscal year ~~2020.~~2023. The Company does not anticipate this new standard will have a material impact on its financial statements.

In ~~June 2018,~~December 2019, the FASB issued ASU No. ~~2018-07, Compensation—Stock Compensation~~2019-12, Income Taxes (Topic ~~718)~~740): ~~Improvements~~Simplifying the Accounting for Income Taxes, which simplifies the accounting for income taxes by removing certain exceptions to ~~Nonemployee Share-Based Payment Accounting (“ASU 2018-07”).~~the general principles for income taxes. This ASU expands the scope of Topic 718 to include share-based payment transactions for acquiring goods and services from nonemployees. An entity should apply the requirements of Topic 718 to nonemployee awards except for specific guidance on inputs to an option pricing model and the attribution of costs. The ASU specifies that Topic 718 applies to all share-based payment transactions in which a grantor acquires goods or services to be used or consumed in a grantor’s own operations by issuing share-based payment awards. This standardupdate is effective for the Company’s annual periods beginning after December 15, ~~2019,~~2020, including interim periods within those fiscal years. The Company will adopt the new standard in the first quarter of fiscal year ~~2020.~~2021. The Company does not anticipate this ~~new standard~~update will have a material impact on its financial statements.

~~Semler Scientific, Inc.~~

~~Notes to Condensed Financial Statements~~

~~Unaudited~~

~~(In thousands of U.S. Dollars, except share and per share data)~~

In ~~August 2018,~~January 2020, the FASB issued ASU No. ~~2018-13, Fair Value Measurement~~2020-01, Investments-Equity Securities (Topic ~~820): Disclosure Framework—Changes to the Disclosure Requirements for Fair Value Measurement.~~321), Investments-Equity Method and Joint Ventures (Topic 323), and Derivatives and Hedging (Topic 815). The amendments in this ASU ~~modify~~clarify the ~~disclosure requirements on fair value measurements removing~~interaction between the ~~requirements~~accounting for investments in equity securities, investment in equity method and certain derivatives instruments. The ASU is expected to ~~disclosure amount of~~reduce diversity in practice and ~~reasons for transfers between Level 1 and Level 2~~increase comparability of the ~~fair value hierarchy, the policy~~accounting for timing of transfers between levels, and the valuation processes for Level 3 fair value measurements. In addition, it modified certain disclosures related to Level 3 fair value measurements and added additional disclosures regarding the range and weighted average of significant unobservable inputs used to develop Level 3 fair value measurements and the changes in unrealized gains and losses for the period included in other comprehensive income for recurring Level 3 fair value measurements held at the end of the reporting period.these interactions. This ~~update~~ASU is effective for ~~the Company’s annual periods~~fiscal years beginning after December 15, ~~2019,~~2021. The adoption of this ASU is not expected to have any impact on the Company's results of operations, cash flows or financial position.

In March 2020, FASB issued ASU No. 2020-03, Codification Improvements to Financial Instruments. This ASU improves and clarifies various financial instruments topics, including ~~interim periods within those fiscal years.~~the current expected credit losses standard issued in 2016 (ASU No. 2016-13). The ASU includes seven different issues that describe the areas of improvement and the related amendments to GAAP, intended to make the standards easier to understand and apply by eliminating inconsistencies and providing clarifications. The amendments have different effective dates. The Company ~~will adopt~~is evaluating the effect of adopting this new ~~standard in the first quarter of fiscal year 2020. The Company~~accounting guidance, but does not ~~anticipate this update to~~expect adoption will have a material impact on its financial statements.

In March 2020, the FASB issued ASU No. 2020-04, Reference Rate Reform (Topic 848): Facilitation of the Effects of Reference Rate Reform on Financial Reporting. This ASU provides optional expedient and exceptions for applying generally accepted accounting principles to contracts, hedging relationships, and other transactions affected by reference rate reform if certain criteria are met. In response to the concerns about structural risks of interbank offered rates and, particularly, the risk of cessation of the London Interbank Offered Rate, regulators in several jurisdictions around the world have undertaken reference rate reform initiatives to identify alternative reference rates that are more observable or transaction-based and less susceptible to manipulation. The ASU provides companies with optional guidance to ease the potential accounting burden associated with transitioning away from reference rates that are expected to

~~Assets for Lease, net~~

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Notes to Condensed Financial Statements

Unaudited

(In thousands of U.S. Dollars, except share and per share data)

be discontinued. The ASU can be adopted no later than December 1, 2022, with early adoption permitted. The Company has not yet adopted this ASU and is evaluating the effect of adopting this new accounting guidance.

2. Variable-fee Revenue

The Company recognizes variable-fee licenses (i.e., fee per test) and sales of hardware equipment and accessories in accordance with Topic 606. Total fees from variable-fee licenses represent approximately $4,088 and $2,660 of revenues for the three months ended September 30, 2020 and 2019, respectively. Total fees from variable-fee licenses represent approximately $7,080 and $6,166 for the nine months ended September 30, 2020 and 2019, respectively. Total sales of hardware and equipment accessories represent approximately $332 and $291 of revenues for the three months ended September 30, 2020 and 2019, respectively. Total sales of hardware and equipment accessories represent approximately $732 and $842 of revenues for the nine months ended September 30, 2020 and 2019, respectively. Essentially all of the variable-fee licenses are with large healthcare organizations. The remainder of the revenue is earned from leasing the Company's testing product for a fixed fee, which is not subject to Topic 606.

3. Assets for Lease, net

The Company enters into contracts with customers for the Company’s QuantaFlo^® product. The Company has determined these contracts meet the definition of a lease under Topic 842. The lease portfolio primarily consists of operating leases that are short-term in nature (monthly, quarterly or one year, all of which have renewal options). The assets associated with these leasing arrangements are identified below as assets for lease. During the three months ended September 30, 2020 and 2019, the Company recognized approximately $6,307 and $5,951, respectively, in lease revenues related to these arrangements. During the nine months ended September 30, 2020 and 2019, the Company recognized approximately $18,718 and $16,608, respectively, in lease revenues related to these arrangements, which is included in Revenues on the Condensed Statements of Income.

Assets for lease consist of the following:

	September 30, 2019			December 31, 2018

							September 30,		December 31,
							2020		2019
Assets for lease	$	3,047		$	2,218		$	3,272	$	3,374
Less: accumulated depreciation		(1,221	)		(975	)		(1,470)		(1,295)
Assets for lease, net	$	1,826		$	1,243		$	1,802	$	2,079

Depreciation expense amounted to ~~$124~~$146 and ~~$97~~$124 for the three months ended September 30, ~~2019~~2020 and ~~2018,~~2019, respectively. Depreciation expense amounted to ~~$361~~$318 and ~~$296~~$361 for the nine months ended September 30, ~~2019~~2020 and ~~2018,~~2019, respectively. Reduction to accumulated depreciation for returned items was ~~$38~~$56 and ~~$24~~$38 for the three months ended September 30, ~~2019~~2020 and ~~2018,~~2019, respectively. Reduction to accumulated depreciation for returned items was ~~$115~~$143 and ~~$85~~$115 for the nine months ended September 30, ~~2019~~2020 and ~~2018,~~2019, respectively. The Company recognized a loss on disposal of assets for lease in the amount of ~~$62~~$54 and ~~$43~~$62 for the three months ended September 30, ~~2019~~2020 and ~~2018,~~2019, respectively. The Company recognized a loss on disposal of assets for lease in the amount of ~~$159~~$178 and ~~$150~~$159 for the nine months ended September 30, ~~2019~~2020 and ~~2018,~~2019, respectively.

4. Property and Equipment, net

Capital assets consist of the following:

	September 30, 2019			December 31, 2018

							September 30,		December 31,
							2020		2019
Capital assets	$	563		$	457		$	739	$	636
Less: accumulated depreciation		(343	)		(234	)		(481)		(387)
Capital assets, net	$	220		$	223		$	258	$	249

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Notes to Condensed Financial Statements

Unaudited

(In thousands of U.S. Dollars, except share and per share data)

Depreciation expense amounted to ~~$38~~$32 and ~~$27~~$38 for the three months ended September 30, ~~2019~~2020 and ~~2018,~~2019, respectively. Depreciation expense amounted to ~~$109~~$94 and ~~$77~~$109 for the nine months ended September 30, ~~2019~~2020 and ~~2018,~~2019, respectively.

~~Semler Scientific, Inc.~~

~~Notes to Condensed Financial Statements~~

~~Unaudited~~

~~(In thousands of U.S. Dollars, except share and per share data)~~

5. Accrued Expenses

Accrued expenses consist of the following:

	September 30, 2019		December 31, 2018

					September 30,		December 31,
					2020		2019
Compensation	$	2,344	$	2,442	$	2,953	$	2,803
Accrued Taxes		185		81
Accrued taxes						875		378
Miscellaneous accruals		380		274		449		733
Total accrued expenses	$	2,909	$	2,797	$	4,277	$	3,914

6. Concentration of Credit Risk

Credit risk is the risk of loss from amounts owed by the financial counterparties. Credit risk can occur at multiple levels; as a result of broad economic conditions, challenges within specific sectors of the economy, or from issues affecting individual companies. Financial instruments that potentially subject the Company to credit risk consist of cash and accounts receivable.

The Company maintains cash with major financial institutions. The Company’s cash consists of bank deposits held with banks that, at times, exceed federally insured limits. The Company limits its credit risk by dealing with counterparties that are considered to be of high credit quality and by performing periodic evaluations of the relative credit standing of these financial institutions.

Management periodically monitors the creditworthiness of its customers and believes that it has adequately provided for any exposure to potential credit loss. For the three months ended September 30, 2018, two customers accounted for 51.8% and 22.2% of the Company’s revenue, respectively. For the nine months ended September 30, 2018, two customers accounted for 53.1% and 19.4% of the Company’s revenue, respectively. For the three months ended September 30, 2019, ~~three~~3 customers accounted for 47.0%, 15.7% and 12.4% of the Company’s ~~revenue,~~revenues, respectively. For the nine months ended September 30, 2019, ~~three~~3 customers accounted for 50.7%, 12.9%, and 12.8% of the Company’s ~~revenue,~~revenues, respectively. For the three months ended September 30, 2020, 2 customers accounted for 39.2% and 29.8% of the Company’s revenues. For the nine months ended September 30, 2020, 2 customers accounted for 47.2% and 20.4% of the Company’s revenues, respectively. As of December 31, ~~2018, two~~2019, 3 customers accounted for ~~43.5%~~55.9%, 17.6% and ~~40.4%~~12.0% of the Company’s accounts receivable, respectively. As of September 30, ~~2019, three~~2020, 3 customers accounted for ~~30.8%~~42.2%, ~~22.6%~~11.6% and ~~16.6%~~11.1% of the Company’s accounts receivable, respectively.The Company’s largest customer in terms of both revenues ~~for~~and accounts receivable in the three months ended September 30, ~~2019 and accounts receivable as of September 30, 2019~~2020 is a U.S. diversified healthcare company and its affiliated plans.

As of December 31, ~~2018, two~~2019, 2 vendors accounted for ~~11.0%~~15.9% and ~~10.8%~~14.1% of the Company’s accounts payable, respectively. As of September 30, ~~2019, four~~2020, 3 vendors accounted for ~~15.4%~~19.4%, ~~12.3%, 10.9%~~17.5%, and ~~10.3%~~13.0% of the Company’s accounts payable, respectively.

7. Commitments and Contingencies

Facilities Leases

The Company recognized facilities lease expenses of ~~$17~~$32 and $17 for the three months ended September 30, ~~2019~~2020 and ~~2018,~~2019, respectively. The Company recognized facilities lease expenses of ~~$51~~$67 and ~~$52~~$51 for the nine months ended September 30, ~~2019~~2020 and ~~2018,~~2019, respectively.

On July 31, 2020, the Company entered into a 61-month lease agreement for office space to use, as necessary, for office administration, lab space and assembly and storage purposes, located in Santa Clara, California. The Company took possession of the leased office space in September 2020, and the lease is effective through September 30, 2025. The following table summarizes the future

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Semler Scientific, Inc.

Notes to Condensed Financial Statements

Unaudited

(In thousands of U.S. Dollars, except share and per share data)

minimum rental payments required under operating leases that had initial or remaining non-cancelable lease terms greater than one year as of September 30, 2020:


	Total
October 2020 through December 2020	$	21
2021		85
2022		87
2023		90
2024		93
2025		71
Thereafter		—
Total undiscounted future minimum payments		447
Less: present value discount		(28)
Total lease liabilities		419
Lease expense in excess of cash payments		(7)
Total right of use (“ROU”) asset	$	412

As of September 30, 2020, the Company’s ROU asset was $412, which is recorded on the Company’s balance sheet as other current assets. The Company’s current maturities of operating lease liabilities were $75, and the Company’s noncurrent lease liabilities were $345, which are recorded on the Company’s balance sheet as other short-term liabilities and other long-term liabilities, respectively. During the three and nine months ended September 30, 2020, the Company paid $0 in operating leases reflected as a reduction in operating cash flows.

Indemnification Obligations

The Company enters into agreements with customers, partners, lenders, consultants, lessors, contractors, sales representatives and parties to certain transactions in the ordinary course of the Company’s business. These agreements may require the Company to indemnify the other party against third party claims alleging that its product infringes a patent or copyright. Certain of these agreements require the Company to indemnify the other party against losses arising from: a breach of representations or covenants, claims relating to property damage, personal injury or acts or omissions of the Company, its employees, agents or representatives. The Company has also agreed to indemnify the directors and certain of the officers and employees in accordance with the by-laws of the Company. These indemnification provisions will vary based upon the nature and terms of the agreements. In many cases, these indemnification provisions do not contain limits on the Company’s liability, and the occurrence of contingent events that will trigger payment under these indemnities is difficult to predict. As a result, the Company cannot estimate its potential liability under these indemnities. The Company believes that the likelihood of conditions arising that would trigger these indemnities is remote and, historically, the Company ~~had~~has not made any significant payment under such indemnification provisions. Accordingly, the Company has not recorded any liabilities relating to these agreements. In certain cases, the Company has recourse against third parties with respect to the aforesaid indemnities, and the Company believes it maintains adequate levels of insurance coverage to protect the Company with respect to potential claims arising from such agreements.

~~Semler Scientific, Inc.~~

~~Notes to Condensed Financial Statements~~

~~Unaudited~~

~~(In thousands of U.S. Dollars, except share and per share data)~~

~~Warrant Repurchase – Related Party~~

On May 3, 2019, the Company entered into a Warrant Repurchase Agreement with the Murphy-Chutorian Family Trust U/D/T dated January 13, 1997, of which Douglas Murphy-Chutorian, M.D., the Company’s director and chief executive officer is co-Trustee with his spouse and of which he is a beneficiary. Pursuant to the warrant repurchase agreement, the Company repurchased a warrant to acquire 65,542 shares of the Company’s common stock held by the trust, which warrant had an exercise price equal to $4.50 per share and an expiration date of July 31, 2023, at an aggregate purchase price of $2,687. The purchase price reflects the difference between the aggregate exercise price of the warrant and the aggregate fair market value of the shares underlying the warrant, based on the last trade price of the Company’s common stock on May 3, 2019, the date of the warrant repurchase agreement. Following the warrant repurchase, the warrant was cancelled and is no longer issued and outstanding.

~~Stock Option~~8. Stock Incentive Plan

The Company’s stock-based compensation program is designed to attract and retain employees while also aligning ~~employees'~~employees’ interests with the interests of its stockholders. Stock options have been granted to employees under the stockholder-approved 2007 Key Person Stock Option Plan (“2007 Plan”) orand stock options and restricted stock have been granted to employees under the stockholder-approved 2014 Stock Incentive Plan (“2014 Plan”). Stockholder approval of the 2014 Plan became effective in September 2014. The 2014 Plan originally provided that the aggregate number of shares of common stock that may be issued pursuant to awards granted under the 2014 Plan may not exceed 450,000 shares (the “Share Reserve”), however in October 2015, the stockholders approved a 1,500,000 increase to the Share Reserve. In addition, the Share Reserve automatically increases on January 1st of each year, for a period of not more than 10 years, beginning on January 1st of the year following the year in which the 2014 Plan became effective and ending

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Notes to Condensed Financial Statements

Unaudited

(In thousands of U.S. Dollars, except share and per share data)

on (and including) January 1, 2024, in an amount equal to 4% of the total number of shares of common stock outstanding on December 31st of the preceding calendar year. The Company’s Board of Directors may act prior to January 1st of a given year to provide that there will be no January 1st increase in the Share Reserve for such year or that the increase in the Share Reserve for such year will be a lesser number of shares of common stock than would otherwise occur. On January 1, ~~2015,~~2020, the Share Reserve increased by 188,640 shares due to the automatic 4% increase. On January 1, 2016, the Share Reserve increased by 204,943 shares due to the automatic 4% increase. On January 1, 2017, the Share Reserve increased by 204,943 shares due to the automatic 4% increase. On January 1, 2018, the Share Reserve increased by 235,090261,249 shares due to the automatic 4% increase. The Share Reserve is currently 2,783,616 shares as of September 30, ~~2019.~~

2020.

In light of stockholder approval of the 2014 Plan, the Company no longer grants equity awards under the 2007 Plan. As of September 30, ~~2019,~~2020, 0 shares of an aggregate total of 407,500 shares were available for future stock-based compensation grants under the 2007 Plan and ~~996,968~~1,259,200 shares of an aggregate total of 2,783,616 shares were available for future stock-based compensation grants under the 2014 Plan.

Restricted Stock

The Company granted 641 shares of restricted stock to an employee in the three and nine months ended September 30, 2020.

StockOptions

Aggregate intrinsic value represents the difference between the closing market value as of September 30, ~~2019~~2020 of the underlying common stock and the exercise price of outstanding, in-the-money options. A summary of the Company’s stock option activity and related information for the nine months ended September 30, ~~2019~~2020 is as follows:

Options Outstanding
Number of
Stock Options
Outstanding Weighted
Average
Exercise Price Weighted
Average
Remaining
Contractual
Term (In Years) Aggregate
Intrinsic Value
(in thousands)
Balance, January 1, 2019 1,761,447 $ 3.18 6.84 $ 55,000
Options exercised (176,365 ) 2.72
Balance, September 30, 2019 1,585,082 $ 3.23 6.11 $ 61,460
Exercisable as of September 30, 2019 1,451,359 $ 3.05 5.96 $ 56,535


	Options Outstanding
				Weighted
	Number of	Weighted		Average
	Stock	Average		Remaining	Aggregate
	Options	Exercise		Contractual	Intrinsic Value
	Outstanding	Price		Term (In Years)	(in thousands)
Balance, January 1, 2020	1,581,582	$	3.23	5.86	$	70,827
Options exercised	(85,226)		2.77	—		—
Balance, September 30, 2020	1,496,356	$	3.25	5.15	$	75,023
Exercisable as of September 30, 2020	1,447,502	$	3.14	5.08	$	72,741

~~Semler Scientific, Inc.~~

~~Notes to Condensed Financial Statements~~

~~Unaudited~~

~~(In thousands of U.S. Dollars, except share and per share data)~~

The total compensation cost related to unvested stock option awards not yet recognized was ~~$515~~$244 as of September 30, ~~2019.~~2020. The weighted average period over which the total unrecognized compensation cost related to these unvested stock awards will be recognized is ~~1.13~~0.7 years.~~The weighted average fair value of~~ There were 0 options granted during the three or nine months ended September 30, ~~2018 was $5.97 per share,~~2020 or ~~an aggregate grant date fair value of $806. There were no options granted during the nine months ended September 30,~~ 2019.

On January 2, 2018, the Compensation Committee of the Company’s Board of Directors granted, and the full Board ratified, an option to acquire an aggregate of 125,000 shares under the 2014 Plan to the Company’s CEO. This option vests 25% on the one-year anniversary of the grant date and monthly thereafter for 36 months, such that the option is vested in full on the four-year anniversary of the grant date. On January 2, 2018, the Company’s Compensation Committee granted, and the full Board ratified, options to each of the then-seated non-employee Directors to acquire 5,000 shares, for an aggregate of 10,000 shares, under the 2014 Plan. These options vest on the one-year anniversary of their grant date. On February 28, 2018, the Compensation Committee of the Company’s Board of Directors accelerated the vesting on stock options issued to consultants such that all unvested shares were vested on that date. This resulted in a one-time expense of $49 during the three months ended March 31, 2018.

~~Determining the Fair Value of Stock Options~~

The Company uses the Black-Scholes pricing model to determine the fair value of stock options. The fair value of each option grant is estimated on the date of the grant. There were no stock options granted during the nine months ended September 30, 2019. There were no stock options granted during the three months ended September 30, 2018. There were 135,000 stock options granted during the nine months ended September 30, 2018. The following assumptions for the periods presented were:

Three months ended
September 30, Nine months ended
September 30,
2019 2018 2019 2018
Expected term (in years) - - - 5
Risk-free interest rate - % - % - % 2.02 %
Expected volatility - % - % - % 0.99 %
Expected dividend rate - % - % - % - %

~~The assumptions are based on the following for each of the periods presented:~~

~~Valuation Method~~ ~~— The Company estimates the fair value of its stock options using the Black-Scholes option pricing model.~~

~~Expected Term~~ — The Company estimates the expected term consistent with the simplified method identified by the SEC. The Company elected to use the simplified method because of its limited history of stock option exercise activity and its stock options meet the criteria of the “plain-vanilla” options as defined by the SEC. The simplified method calculates the expected term as the average of the vesting and contractual terms of the award.

~~Volatility~~ ~~— The Company derives this number from the historical stock volatilities of the Company’s stock over a period approximately equal to the expected term of the options.~~

~~Risk-free Interest Rate~~ ~~— The risk-free interest rate is based on median U.S. Treasury zero coupon issues with remaining terms similar to the expected term on the options.~~

~~Expected Dividend~~— The Company has never declared or paid any cash dividends and does not plan to pay cash dividends in the foreseeable future, and therefore, used an expected dividend yield of zero in the valuation model.

~~Forfeiture~~ — Beginning in the first quarter of 2017, the Company implemented ASU 2016-09, and elected to true-up calculations at the time of forfeiture, rather than creating an estimate at the time of option issuance.

The Company has recorded an expense of$8662 and ~~$139~~$86 as it relates to stock-based compensation for the three months ended September 30, ~~2019~~2020 and ~~2018,~~2019, respectively. The Company has recorded an expense of $190 and $282 ~~and $470~~ as it relates to stock-based compensation for the nine months ended September 30, ~~2019~~2020 and ~~2018,~~2019, respectively:


	Three months ended September 30,				Nine months ended September 30,
	2020		2019		2020		2019
Cost of Revenue	$	—	$	1	$	—	$	1
Engineering and Product Development		—		2		—		14
Sales and Marketing		—		7		—		39
General and Administrative		62		76		190		228
Total	$	62	$	86	$	190	$	282

~~Semler Scientific, Inc.~~

~~Notes to Condensed Financial Statements~~

~~Unaudited~~

~~(In thousands of U.S. Dollars, except share and per share data)~~

Three months ended
September 30, Nine months ended
September 30,
2019 2018 2019 2018
Cost of Revenue $ 1 $ 1 $ 1 $ 1
Engineering and Product Development 2 9 14 26
Sales and Marketing 7 23 39 74
General and Administrative 76 106 228 369
Total $ 86 $ 139 $ 282 $ 470

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Semler Scientific, Inc.

Notes to Condensed Financial Statements

Unaudited

(In thousands of U.S. Dollars, except share and per share data)

9.Income Taxes

The Company’s income tax provision for the three and nine months ended September 30, 2020 and 2019, respectively, reflects its estimate of the effective tax rates expected to be applicable for the full year, adjusted for any discrete events that are recorded in the period in which they occur. The estimates are re-evaluated each quarter based on the estimated tax expense for the full year.

The effective tax rate for the three months and nine months ended September 30, 2020 was 13.19% and 14.17%, respectively, compared to (150)% and (60)%, respectively, in the same periods of the prior year. The increase in the effective tax rate for the three months and nine months ended September 30, 2020 is primarily related to the release of the valuation allowance against the deferred tax assets for federal and state net operating loss (“NOL”) carryforwards and other related deferred tax assets in the quarter ended September 30, 2019.

The effective tax rate for the three months and nine months ended September 30, 2020 differed from the U.S. federal statutory rate of 21%primarily due to state income taxes (net of federal benefit) partially offset by tax benefits associated with employee equity plans and federal and state research and development credit benefit. The effective tax rate for the three months and nine months ended September 30, 2019 differed from the U.S. federal statutory rate of 21% primarily due to NOL carryforwards that offset potential current taxes for which a full valuation allowance had been previously provided being fully released during the quarter ended September 30, 2019.

On March 27, 2020, the Coronavirus Aid Relief, and Economic Security Act was signed into law. The Company has evaluated the impact of the new regulations and determined that there is no material impact to its financial statements.

10. Net Income Per Share, Basic and Diluted

Basic earnings per share (“EPS”) represent net income attributable to common stockholders divided by the weighted average number of common shares outstanding during the measurement period. Diluted EPS represents net income attributable to common stockholders divided by the weighted average number of common shares outstanding during the measurement period while also giving effect to all potentially dilutive common shares that were outstanding during the period using the treasury stock method.

Basic and diluted EPS is calculated as follows:

	Three months ended September 30,
	2019						2018
	Shares		Net Income		EPS		Shares		Net Income		EPS
Basic EPS		6,492,501	$	7,779	$	1.20		6,086,489	$	1,468	$	0.24

													Three months ended September 30,
													2020					2019
													Shares	Net Income		EPS		Shares	Net Income		EPS
Basic													6,578,808	$	4,866	$	0.74	6,492,501	$	7,779	$	1.20
Common stock warrants		155,490		-				354,420		-			70,291		0			155,490		0
Common stock options		1,460,062		-				1,486,897		-			1,389,414		0			1,460,062		0
Diluted EPS		8,108,053	$	7,779	$	0.96		7,927,788	$	1,468	$	0.19
Diluted													8,038,513	$	4,866	$	0.61	8,108,053	$	7,779	$	0.96

	Nine months ended September 30,
	2019						2018
	Shares		Net Income		EPS		Shares		Net Income		EPS
Basic EPS		6,410,588	$	12,251	$	1.91		5,998,460	$	3,626	$	0.60

													Nine months ended September 30,
													2020					2019
													Shares	Net Income		EPS		Shares	Net Income		EPS
Basic													6,553,522	$	8,614	$	1.31	6,410,588	$	12,251	$	1.91
Common stock warrants		190,144		-				308,529		-			69,682		0			190,144		0
Common stock options		1,521,264		-				1,304,972		-			1,423,556		0			1,521,264		0
Diluted EPS		8,121,996	$	12,251	$	1.51		7,611,961	$	3,626	$	0.48
Diluted													8,046,759	$	8,614	$	1.07	8,121,996	$	12,251	$	1.51

~~There~~The were no0 weighted average shares outstanding of common stock equivalents excluded from the computation of diluted net ~~income~~loss per share for the three or nine months ended September 30, ~~2019~~2020 and ~~2018.~~ 2019.

~~10.~~

~~Income Tax Benefit~~

11. Exclusive Distribution Agreement

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Semler Scientific, Inc.

Notes to Condensed Financial Statements

Unaudited

(In thousands of U.S. Dollars, except share and per share data)

In September 2020, the Company entered into an agreement to exclusively market and distribute a new product line in the United States, including Puerto Rico, for a privately-held company. Under this distribution agreement, the Company agreed to purchase $1,200 of product inventory. The ~~Company’s income tax provision (benefit) for~~Company also agreed to certain minimum quotas of product inventory during the ~~three and nine months ended September 30, 2019 and September 30, 2018 reflects its estimate~~term of the ~~effective tax rates expected~~agreement and to make royalty payments ranging from 0% to 10% of net sales depending on the average net sales price of the distributed products. Unless early terminated in accordance with its terms, the exclusive distribution agreement will remain in full force and effect until December 31, 2024, and thereafter there is an option for this agreement to be ~~applicable~~automatically renewed for additional 4-year terms. In September 2020, the ~~full year, adjusted~~Company made a prepayment of $900 for ~~any discrete events that are~~inventory to be delivered during the quarter ending December 31, 2020, which has been recorded in the ~~period~~condensed balance sheet as prepaid expenses and other current assets.

12. Note Receivable

In September 2020, the Company acquired a $500 promissory note from a privately-held company in ~~which they occur.~~a new product area. The ~~estimates are re-evaluated each quarter based~~Company funded $400 of the note, and the remaining $100 was retained for expense reimbursement. This note receivable is recorded on the ~~estimated tax expense~~Company’s balance sheet as of September 30, 2020. This note has an interest rate of 10%, has customary terms for default and fully matures upon the one-year anniversary of the issuance date. The Company expects to receive 0 payments on this note during the remainder of 2020 and full payment of $550 for the ~~full year. During~~note and interest upon maturity in 2021.

13.Subsequent Events

Following the ~~three months ended September 30, 2019, management determined there was sufficient positive evidence that it was more likely than not that~~note receivable investment referred to in Note 12, in October 2020, the ~~federal~~Company made an investment in the equity securities of such privately-held company for 40,922 shares of the Company’s common stock.

In October 2020, the Company acquired a convertible note in a third privately-held company in a new product area for a purchase price of $58, which note converted into shares of preferred stock concurrent with the Company’s purchase of additional shares of preferred stock for $250. Subsequently, the Company acquired a $1,500 convertible promissory note, which is convertible into shares of preferred stock, and ~~state net operating loss (“NOL”) carryforwards and other related deferred tax assets would be realized and therefore, released the valuation allowance against the deferred tax assets.~~

warrants to purchase shares of common stock of this third privately-held company. The Company ~~recorded a tax benefit~~funded $1,400 of ~~approximately $4,671 and a tax provision of $0 for~~ the three months ended September 30, 2019 and 2018, respectively. The Company recorded a tax benefit of approximately $4,594 and a tax provision of $0 for the nine months ended September 30, 2019 and 2018, respectively, representing effective tax rates of (60)% and 0%, respectively. The tax benefit during the three and nine months ended September 30, 2019 was primarily due to the release of valuation allowances of approximately $5,338.

~~Semler Scientific, Inc.~~

~~Notes to Condensed Financial Statements~~

~~Unaudited~~

~~(In thousands of U.S. Dollars, except share and per share data)~~

~~The difference between the U.S. federal statutory tax rate of 21%~~note, and the ~~Company’s effective tax rate~~remaining $100 was retained for expense reimbursement.

Table of (60)% for the nine months ended September 30, 2019 is primarily due to the release of the allowance against the deferred tax assets referred to above. In addition, the currently expected annual tax rate takes into account actual year-to-date pre-tax and taxable income as well as expected activity through December 31, 2019. Expected activity for the fourth quarter 2019 does not include certain discrete transactions as deductions for stock options that might be exercised in the fourth quarter, and accordingly the year-end effective tax rate may differ from current expectations. The difference between the U.S. Federal statutory rate of 21% and the Company’s effective tax rate of 0% for the nine months ended September 30, 2018 was due primarily to NOL carryforwards that offset potential current taxes for which a full valuation allowance had been previously provided.Contents

Item 2. Management’s Discussion and Analysis of Financial Condition and Results of Operations.

The following discussion and analysis should be read together with our condensed unaudited financial statements and the related notes appearing elsewhere in this quarterly report on Form 10-Q and with the audited financial statements and notes for the fiscal year ended December 31, ~~2018,~~2019, and the information under the headings “Risk Factors” and “Management’s Discussion and Analysis of Financial Condition and Results of Operations” in our Annual Report on Form 10-K filed with the SEC on March ~~7, 2019,~~9, 2020, or the Annual Report. This discussion contains forward-looking statements reflecting our current expectations that involve risks and uncertainties. See “Cautionary Note Regarding Forward-Looking Statements” for a discussion of the uncertainties, risks and assumptions associated with these statements. Actual results and the timing of events could differ materially from those discussed in our forward-looking statements as a result of many factors, including those set forth under “Risk Factors” in our Annual ~~Report.~~Report and the ongoing COVID-19 pandemic.

Overview

We are ~~an emerging growth~~a company providing technology solutions to improve the clinical effectiveness and efficiency of healthcare providers. Our mission is to develop, manufacture and market innovative proprietary products and services that assist our customers in evaluating and treating chronic diseases. In 2011, we began commercializing our first patented and U.S. Food and Drug Administration, or FDA, cleared product, which measured arterial blood flow in the extremities to aid in the diagnosis of peripheral arterial disease, or PAD. In March 2015, we received FDA 510(k) clearance for the next generation version of our product, ~~QuantaFlo™~~QuantaFlo®, which we began commercializing in August 2015. We believe our products and services position us to provide valuable information to our customer base, which in turn permits them to better guide patient care.

In the three months ended September 30, ~~2019,~~2020, we had total revenues of $10,727,000 and net income of $4,866,000, compared to total revenues of $8,902,000 and net income of $7,779,000 ~~compared to total revenues of $5,579,000 and net income of $1,468,000~~ in the same period in ~~2018.~~2019. In the nine months ended September 30, ~~2019,~~2020, we had total revenues of $26,530,000 and net income of $8,614,000 compared to total revenues of $23,616,000 and net income of $12,251,000 ~~compared to total revenues of $15,526,000 and net income of $3,626,000~~ in the same period in ~~2018.~~2019.

Recent Developments

~~Emerging Growth Company Elections~~

~~The JOBS Act provides that an emerging growth company,~~Late in the first quarter and into the second quarter of 2020, we experienced decreased test volumes due to COVID-19 related “social distancing” and other executive orders mandating “shelter-in-place” or similar restrictions, which limited patient visits by our customers. As such restrictions have been lifted around the country and non-emergency medical services have resumed in the third quarter of 2020, our business has returned to and even exceeded pre-COVID-19 levels. We experienced even higher test volumes as our ~~company, can take advantage~~customers accelerated usage due to a backlog of untested patients. However, there is uncertainty that the recent roll-back in restrictions will be maintained. New, additional or different restrictions could be imposed, which could impact the usage of our product by our customers. Other customers who have fixed-fee licenses could decide to cancel their licenses if they are not able to use our device as frequently as they had anticipated in light of such restrictions.

In September 2020, we entered into an ~~extended transition period~~agreement to exclusively market and distribute a new product line in the United States, including Puerto Rico, for ~~complying with new or revised accounting standards. This allows an emerging growth company~~a privately-held company. Under this distribution agreement, we agreed to ~~delay~~purchase $1,200,000 of product inventory. We also agreed to certain minimum quotas of product inventory during the adoption of these accounting standards until they would otherwise apply to private companies. We have elected to avail ourselves of this exemption. As a result, our financial statements may not be comparable to other public companies that comply with public company effective dates. In the future, we may elect to opt outterm of the ~~extended period~~agreement and to make royalty payments ranging from 0% to 10% of net sales depending on the average net sales price of the distributed products. Unless early terminated in accordance with its terms, the exclusive distribution agreement will remain in full force and effect until December 31, 2024, and thereafter there is an option for ~~adopting~~this agreement to be automatically renewed for additional 4-year terms. In September 2020, we made a prepayment of $900,000 for inventory to be delivered during the fourth quarter of 2020.

In September 2020, we acquired a $500,000 promissory note from a second privately-held company in a new ~~accounting standards. If we do so, we would need to disclose such decision~~product area. We funded $400,000 of the note, and ~~it would be irrevocable.~~the remaining $100,000 was retained for expense reimbursement. This note has an interest rate of 10%, has customary terms for default and fully matures upon the one-year anniversary of the issuance date. We expect to ~~cease being~~receive no payments on this note during the remainder of 2020 and full payment of $550,000 for the note and interest upon maturity in 2021. Following this, in October 2020, we made an ~~emerging growth~~investment in the equity securities of such privately-held company asfor 40,922 shares of ~~December 31, 2019,~~our common stock. The shares were issued in reliance on the ~~last day~~exemption from registration requirements provided by Section 4(a)(2) of the ~~fiscal year following~~Securities Act of 1933, as amended.

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In October 2020, we acquired a convertible note in a third privately-held company in a new product area for a purchase price of $58,000, which note converted into shares of preferred stock concurrent with our purchase of additional shares of preferred stock for $250,000. Subsequently, we acquired a $1,500,000 convertible promissory note, which is convertible into shares of preferred stock, and warrants to purchase shares of common stock of this third privately-held company. We funded $1,400,000 of the ~~fifth anniversary of our initial public offering.~~

~~Factors Affecting Future Results~~

note, and the remaining $100,000 was retained for expense reimbursement.

We ~~have not identified any factors~~invested in these three private companies as they are developing products that ~~have a recurring effect that~~may allow us to expand our current product offering beyond QuantaFlo® for PAD, in addition to our internal research and development efforts. Their products deal with better chronic disease management and may be used by primary care practitioners, are ~~necessary~~FDA-cleared or equivalent, produced positive clinical data and two of the three new products seek to ~~understand period to period comparisons as appropriate, nor any one-time events that have an effect on~~improve aspects or sequelae of the ~~financials.~~metabolic syndrome.

Results of Operations

Three Months Ended September 30, ~~2019~~2020 Compared to Three Months Ended September 30, ~~2018~~2019

Revenues

We had revenues of ~~$8,902,000~~$10,727,000 for the three months ended September 30, ~~2019,~~2020, an increase of ~~$3,323,000,~~$1,825,000, or ~~60%~~21%, compared to ~~$5,579,000~~$8,902,000 in the same period in ~~2018.~~2019. Our revenues are primarily from fees charged to customers for use of our vascular testing products and from ~~sales~~sale of accessories used with these products. We recognized revenues from fixed-fee licenses of ~~$8,612,000 from fees for our vascular testing products for the three months endedSeptember 30, 2019~~,$6,307,000 an increase of ~~$3,086,000~~$356,000, or 6%, compared to ~~$5,526,000~~$5,951,000 in the same period of the prior year. ~~Of these fees, approximately $5,951,000 were~~We recognized revenues from ~~fixed price software~~variable-fee license ~~fees, and approximately~~revenues of $4,088,000 an increase of $1,428,000, or 54% compared to $2,660,000 ~~from variable price software license fees.~~in the same period of the prior year. The remainder of our revenues of $332,000 was from other items, such as the sale of equipment, supplies or accessories sales, ~~which were $291,000 in the three months endedSeptember 30, 2019~~an increase of $41,000, or 14%, as compared to ~~$53,000~~$291,000 in the same period of the prior year.

Revenues from fees for vascular testing products are recognized monthly for each unit installed with a customer, ~~and primarily represent licensing fees for software, which are~~ usually billed as a ~~fixed~~ monthly ~~fee~~fixed-fee, or as a ~~variable usage-based~~ monthly ~~fee.~~variable-fee dependent on usage. The primary reason for the increase in revenues was growth in the number of installed units from both new customers and established customers, which we believe is the result of our sales and marketing efforts.

Operating expenses

We had total operating expenses of ~~$5,791,000~~$5,172,000 for the three months ended September 30, ~~2019, an increase~~2020, a decrease of ~~$1,758,000,~~$619,000 or ~~44%~~11%, compared to ~~$4,033,000~~$5,791,000 in the same period ofin the prior year. The primary ~~reason~~reasons for this change ~~was increased compensation~~were decreased personnel expense and lower travel expenses, as we modified our business practices in light of the ~~sales team,~~COVID-19 pandemic. As a percentage of revenues, operating expenses decreased to 48% in the third quarter of 2020 as ~~well as an increase~~compared to 65% in ~~our field sales, technical support personnel headcount and administration expenses to service our expanding number of customers.~~the prior year period. The changes in the various components of our operating expenses are described below.

Cost of revenues

We had cost of revenues of ~~$974,000~~$820,000 for the three months ended September 30, ~~2019, an increase~~2020, a decrease of ~~$359,000,~~$154,000, or ~~58%~~16%, compared to ~~$615,000~~$974,000 in the same period of the prior year.The The primary ~~reason~~reasons for this change ~~was increased costs due to increased sales volume of, placement of~~were decreased personnel expense and ~~technical support for installations in the field. These increases were partially offset by~~ lower depreciation per unit per month as a greater percentage of installations were software and sensor only rather than laptop, software and sensor, ~~as well as lower residual value for retired units.~~partially offset by increased customer support expense. As a percentage of revenues, cost of revenues ~~was~~decreased to 8% in the third quarter of 2020, as compared to 11% ~~for both periods.~~in the prior year period.

Engineering and product development expense

We had engineering and product development expense of ~~$617,000~~$672,000 for the three months ended September 30, ~~2019,~~2020, an increase of ~~$30,000,~~$55,000, or 5%9%, compared to ~~$587,000 in the same period of the prior year, as we continued work on ongoingproduct development and customization efforts~~.

~~Sales and marketing expense~~

~~We had sales and marketing expense of $2,345,000 for the three months ended September 30, 2019, an increase of $547,000, or 30%, compared to $1,798,000~~$617,000 in the same period of the prior year. The increase was primarily due to ~~higher sales compensation~~increased personnel and ~~personnel expense, as well as increased headcount and expense, each~~other costs associated with our product development and customization efforts, partially offset by lower consultant costs. As a ~~growing business.~~percentage of revenues, engineering and product development expense was 6% in the third quarter of 2020, as compared to 7% in the prior year period.

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Sales and marketing expense

We had sales and marketing expense of $2,116,000 for the three months ended September 30, 2020, a decrease of $229,000, or 10%, compared to $2,345,000 in the same period of the prior year. The decrease was primarily due to lower travel expenses. As a percentage of revenues, sales and marketing expense decreased to 20% in the third quarter of 2020, as compared to 26% in the prior year period.

General and administrative expense

We had general and administrative expense of ~~$1,855,000~~$1,564,000 for the three months ended September 30, ~~2019, an increase~~2020, a decrease of ~~$822,000,~~$291,000, or ~~80%~~16%, compared to ~~$1,033,000~~$1,855,000 in the same period of the prior year. The decrease was primarily due to lower personnel expense and lower professional fees. As a percentage of revenues, general and administrative expense decreased to 15% in the third quarter of 2020, as compared to 21% in the prior year period.

Other income/expense

We had other income of $40,000 for the three months ended September 30, 2020, compared to other expense of $3,000 in the same period of the prior year. The increase was primarily due to miscellaneous income and interest income, partially offset by credit card merchant fees.

Pre-tax net income

For the growth in our business, which led to increased expenses to support a growing company, including higher infrastructure costs, insurance and other professional fees, as well as higher compensation and personnel expense.

~~Other expense~~

Weforegoing reasons, we had ~~other expense~~pre-tax net income of ~~$3,000~~$5,595,000, for the three months ended September 30, ~~2019, a decrease~~2020, an increase of ~~$75,000,~~$2,487,000, or ~~96%~~80%, compared to ~~other~~a pre-tax net income of $3,108,000 for the same period of the prior year.

Income tax expense (benefit)

We had income tax expense of ~~$78,000~~$729,000 for the three months ended September 30, 2020, compared to income tax benefit of $4,671,000 in the same period of the prior year. The ~~decrease~~tax expense in the current quarter was due to increased income from operations. The tax benefit in the prior year period was primarily due to the release of a ~~decrease in interest expense~~tax valuation allowance.

Net income

For the foregoing reasons, we had net income of ~~$73,000 associated with retirement of notes payable.~~

~~Income tax benefit~~

~~We had an income tax benefit of $4,671,000~~$4,866,000, or $0.74 per basic share and $0.61 per diluted share, for the three months ended September 30, ~~2019, which included current tax expense~~2020, a decrease of ~~$38,000 related~~$2,913,000, or 37%, compared to ~~the period, offset by~~ a $4,709,000 benefit relating to the release of the entire allowance against deferred tax assets. The remaining valuation allowance was released due to our recent history of eight straight quarters of positive income before income taxes, resulting in a credit to income tax expense. Due to full release of the valuation allowance, income in future periods may also result in tax expense.

~~Net income~~

~~For the foregoing reasons, we had~~ net income of $7,779,000, or $1.20 per basic share and $0.96 per diluted share, for the three months ended September 30, 2019, an increase of $6,311,000, or 430%, compared to a net income of $1,468,000, or $0.24 per basic share and $0.19 per diluted share, for the same period of the prior year. We had income before income taxes of $3,108,000 for the three months ended September 30, 2019, an increase of $1,640,000, or 112%, compared to income before income taxes of $1,468,000 for the same period of the prior year.

Nine Months Ended September 30, ~~2019~~2020 Compared to Nine Months Ended September 30, ~~2018~~2019

Revenues

We had revenues of ~~$23,616,000~~$26,530,000 for the nine months ended September 30, ~~2019,~~2020, an increase of ~~$8,090,000,~~$2,914,000, or ~~52%~~12%, compared to ~~$15,526,000~~$23,616,000 in the same period in ~~2018.~~2019. Our revenues are primarily from fees charged to customers for use of our vascular testing products and from ~~sales~~sale of accessories used with these products. We recognized revenues from fixed-fee licenses of ~~$22,774,000 from fees for our vascular testing products for the nine months endedSeptember 30, 2019~~,approximately $18,718,000, an increase of ~~$7,522,000~~$2,110,000, or 13%, compared to ~~$15,252,000~~$16,608,000 in the same period of the prior year. ~~Of these fees,~~We recognized revenues from variable-fee license of approximately ~~$16,608,000 were from fixed price software license fees, and approximately~~$7,080,000, an increase of $914,000, or 15%, compared to $6,166,000 ~~from variable price software license fees.~~in the same period of the prior year. The remainder of our revenues was from other items, such as the sale of equipment, supplies or accessories sales, which were ~~$842,000 in the nine months endedSeptember 30, 2019~~$732,000, a decrease of $110,000, or 13%, as compared to ~~$274,000~~$842,000 in the same period of the prior year.

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Operating expenses

We had total operating expenses of ~~$15,956,000~~$16,564,000 for the nine months ended September 30, ~~2019,~~2020, an increase of ~~$4,323,000,~~$608,000 or ~~37%~~4%, compared to ~~$11,633,000~~$15,956,000 in the same period in the prior year. The primary reason for this change was higher personnel expense to support overall growth in our business ~~which led to increased compensation of the sales team, as well as an increase in our field sales, technical support personnel headcount~~ and ~~administration expenses to service~~ the expanding number of ~~customers.~~customers, which offset the other decreases due to reduced travel in light of the COVID-19 pandemic. As a percentage of revenues, operating expenses decreased to 62% for the nine months ended September 30, 2020 as compared to 68% in the prior year period. The changes in the various components of our operating expenses are described below.

Cost of revenues

We had cost of revenues of ~~$2,755,000~~$2,370,000 for the nine months ended September 30, ~~2019, an increase~~2020, a decrease of ~~$756,000,~~$385,000, or ~~38%~~14%, compared to ~~$1,999,000~~$2,755,000 in the same period of the prior year.The The primary ~~reason~~reasons for this change ~~was increased costs due to increased sales volume of, placement of~~were decreased personnel expense and ~~technical support for installations in the field. These increases were partially offset by~~ lower depreciation per unit per month as a greater percentage of installations were software and sensor only rather than laptop, software and sensor, ~~as well as lower residual value for retired units.~~partially offset by increased customer support expense. As a percentage of revenues, cost of revenues decreased to ~~12%,~~9% in the nine months ended September 30, 2020, as compared to ~~13%,~~12% in the prior year period, primarily due to ~~revenue~~revenues growing at a faster pace than cost of ~~revenue~~.revenues.

Engineering and product development expense

We had engineering and product development expense of ~~$1,777,000~~$2,277,000 for the nine months ended September 30, ~~2019,~~2020, an increase of ~~$334,000,~~$500,000, or ~~23%~~28%, compared to ~~$1,443,000~~$1,777,000 in the same period of the prior year.The increase was primarily due to ~~consultant costs,~~increased personnel and other costs associated with ~~ongoing projects related to~~ our product development and customization efforts, ~~including new applications for our~~partially offset by lower consultant costs. As a percentage of revenues, engineering and product development expense increased to 9% in the nine months ended September 30, 2020, as ~~well as other product enhancements.~~compared to 8% in the prior year period.

Sales and marketing expense

We had sales and marketing expense of ~~$6,626,000~~$7,283,000 for the nine months ended September 30, ~~2019,~~2020, an increase of ~~$1,343,000,~~$657,000, or ~~25%~~10%, compared to ~~$5,283,000~~$6,626,000 in the same period of the prior year. The increase was primarily due to higher ~~sales compensation and~~ personnel expense ~~as well as increased headcount and expense, each~~ associated with the continued expansion of existing customers, education, training, and associated expense, partially offset by lower travel expenses. As a ~~growing business.~~percentage of revenues, sales and marketing expense decreased to 27% in the nine months ended September 30, 2020, as compared to 28% in the prior year period.

General and administrative expense

We had general and administrative expense of ~~$4,798,000~~$4,634,000 for the nine months ended September 30, ~~2019, an increase~~2020, a decrease of ~~$1,890,000,~~$164,000, or ~~65%~~3%, compared to ~~$2,908,000~~$4,798,000 in the same period of the prior year. The decrease was primarily due to lower professional fees, partially offset by increased expenses to support a growing company, including higher insurance and personnel expense. As a percentage of revenues, general and administrative expense decreased to 17% in the nine months ended September 30, 2020, as compared to 20% in the prior year period.

Other income/expense

We had other income of $69,000 for the nine months ended September 30, 2020, compared to other expense of $3,000 in the same period of the prior year. The increase was primarily due to miscellaneous income and interest income, partially offset by credit card merchant fees.

Pre-tax net income

~~Other expense~~

Weforegoing reasons, we had ~~other expense~~pre-tax net income of ~~$3,000~~$10,035,000, for the nine months ended September 30, ~~2019, a decrease~~2020, an increase of ~~$264,000,~~$2,378,000, or ~~99%~~31%, compared to ~~$267,000~~a pre-tax net income of $7,657,000 for the same period of the prior year.

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Income tax expense /benefit

We had income tax expense of $1,421,000 for the nine months ended September 30, 2020, compared to $4,594,000 income tax benefit in the same period of the prior year. The ~~decrease~~change was primarily due to increased income from operations in the present year period, as compared to release of a ~~decrease~~tax valuation allowance in ~~interest expense~~the prior year period.

Net income

For the foregoing reasons, we had net income of ~~$263,000 associated with retirement of notes payable.~~

~~Income tax benefit~~

~~We had an income tax benefit of $4,594,000~~$8,614,000, or $1.31 per basic share and $1.07 per diluted share, for the nine months ended September 30, ~~2019, which included current tax expense~~2020, a decrease of ~~$115,000 related~~$3,637,000, or 30%, compared to ~~the year-to-date operations, offset by~~ a $4,709,000 benefit relating to the release of the entire allowance against deferred tax assets. The remaining allowance was released due to our recent history of eight straight quarters of positive income before income taxes, resulting in a credit to income tax expense. Due to full release of the valuation allowance, income in future periods may also result in tax expense.

~~Net income~~

~~For the foregoing reasons, we had~~ net income of $12,251,000, or $1.91 per basic share and $1.51 per diluted share, for the ~~nine months ended September 30, 2019, an increase of $8,625,000, or 238%, compared to a net income of $3,626,000, or $0.60 per basic share and $0.48 per diluted share, for the~~ same period of the prior year.

Liquidity and Capital Resources

We had ~~income before income taxes~~cash of ~~$7,657,000~~$16,793,000 at September 30, 2020 compared to $7,741,000 at December 31, 2019, and total current liabilities of $5,651,000 at September 30, 2020 compared to $5,207,000 at December 31, 2019. As of September 30, 2020, we had working capital of approximately $16,128,000.

Our cash is held in a variety of non-interest bearing bank accounts. We may also hold interest-bearing instruments subject to investment guidelines allowing for holdings in U.S. government and agency securities, corporate securities, taxable municipal bonds, commercial paper and money market accounts. In addition, we may also choose to invest some of our cash resources in other entities that may have complementary technologies or product offerings, such as our recent decision to acquire inventory for distribution in the United States, including Puerto Rico, of a new product line offering, as well as make two minority investments in other privately-held companies in new product areas.

Operating activities

We generated $9,600,000 of net cash from operating activities for the nine months ended September 30, ~~2019, an increase of $4,031,000, or 111%,~~2020 compared to ~~income before income taxes of $3,626,000 for the same period of the prior year.~~

~~Liquidity and Capital Resources~~

We had cash of $8,542,000 at September 30, 2019 compared to $3,284,000 at December 31, 2018, and total current liabilities of $4,747,000 at September 30, 2019 compared to $3,512,000 at December 31, 2018. As of September 30, 2019, we had working capital of approximately $7,340,000.

~~Operating activities~~

~~We generated~~ $9,093,000 of net cash from ~~operating activitiesfor the nine months ended September 30, 2019compared to generating $2,651,000 of net cash in~~ operating activities for the same period of the prior year. The ~~improvement~~change was primarily due to ~~changes in~~ net income, ~~as well as both non-cash adjustments and changes in our operating assets and liabilities,~~ which occurred due to growth in our ~~business~~business. Non-cash adjustments to reconcile net income to net cash from operating activities were $2,047,000 and ~~affected~~were primarily due to deferred tax expense of $1,224,000, depreciation ~~accrued~~of $412,000, stock-based compensation expense of $190,000, loss on disposal of assets for lease of $178,000 and bad debt expense of $43,000. Changes in operating assets and liabilities used $1,061,000 of net cash, primarily due to prepaid expenses and other assets of $1,315,000, other non-current assets of $416,000, trade accounts receivable of $13,000 and accounts payable of $2,000, which were partially offset by cash provided by other current and non-current liabilities of $416,000, accrued expenses ~~accounts payable,~~of $264,000 and deferred revenue ~~and trade accounts receivable.~~of $5,000.

Investing activities

We used $722,000 of net cash in investing activities for the nine months ended September 30, 2020, which reflects funding of notes receivable of $400,000, purchases of assets for lease of $219,000 and fixed asset purchases of $103,000 to support our growing business.

We used $1,208,000 of net cash in investing activities for the nine months ended September 30, 2019, which reflects purchases of assets for lease of $1,102,000 and fixed asset purchases of $106,000 to support our growing business.

Financing activities

We ~~used $453,000 of~~generated $174,000 in net cash ~~in investing~~from financing activities ~~for~~during the nine months ended September 30, ~~2018, which reflects purchases~~2020, due to proceeds from exercise of ~~assets for lease~~stock options of ~~$323,000 and fixed asset purchases of $131,000 to support our growing business.~~

~~Financing activities~~

$174,000.

We used $2,627,000 ofin net cash in financing activities during the nine months ended September 30, 2019, primarily due to the ~~repurchase~~re-purchase of warrants of $2,687,000 from our chief executive officer in May 2019, partially offset by proceeds from ~~the~~ exercise of stock options of $60,000.

~~We used $568,000~~Table of net cash in financing activities during the nine months ended September 30, 2018, reflecting the payment of loans payable of $1,072,000, partially offset by proceeds from the exercise of warrants and stock options of $504,000.Contents

Off-Balance Sheet Arrangements

As of each of September 30, ~~2019~~2020 and December 31, ~~2018,~~2019, we had no off-balance sheet arrangements.

Commitments and Contingencies

As of each of September 30, ~~2019~~2020 and December 31, ~~2018,~~2019, other than employment/consulting agreements with key executive officers and our facilities lease obligation, we had no material commitments other than the liabilities reflected in our financial statements.

Item 3. Quantitative and Qualitative Disclosures About Market Risk.
Not applicable.
Item 4. Controls and Procedures.
Disclosure Controls and Procedures
We maintain disclosure controls and procedures that are designed to ensure material information required to be disclosed in our reports that we file or submit under the Securities Exchange Act of 1934, as amended, or the Exchange Act, is recorded, processed, summarized, and reported within the time periods specified in the SEC’s rules and forms, and that such information is accumulated and communicated to our management, including our Chief Executive Officer, our Senior Vice President, Finance and Accounting and our Vice President, Finance, as appropriate, to allow timely decisions regarding required financial disclosure. In designing and evaluating the disclosure controls and procedures, ~~management recognizes~~we recognized that ~~any controls and procedures,~~a control system, no matter how well designed and operated, can provide only reasonable, not absolute, assurance that the objectives of ~~achieving~~ the ~~desired~~ control ~~objectives,~~system are met. Because of the inherent limitations in all control systems, no evaluation of controls can provide absolute assurance that all control issues and ~~management is~~instances of fraud, if any, within a company have been detected. Management necessarily was required to apply its judgment in evaluating the cost-benefit relationship of possible controls and procedures. ~~Our management,~~
Under the supervision of and with the participation of our ~~chief executive officer,~~management, including our ~~senior vice president, finance~~Chief Executive Officer, our Senior Vice President, Finance and ~~accounting~~Accounting and our ~~vice president, finance,~~Vice President, Finance, we evaluated the effectiveness of our disclosure controls and procedures (as such term is defined in Rules 13a-15(e) and 15d-15(e) under the Exchange Act) as of September 30, 2020. Based upon that evaluation, our Chief Executive Officer, our Senior Vice President, Finance and Accounting and our Vice President, Finance concluded that, because of the material weaknesses in our internal control over financial reporting, our disclosure controls and procedures were not effective. Notwithstanding the material weaknesses, our management, including our Chief Executive Officer, our Senior Vice President, Finance and Accounting and our Vice President, Finance, has concluded that the consolidated financial statements included in this Quarterly Report on Form 10-Q are fairly stated, in all material respects, in accordance with generally accepting accounting principles in the United States for each of the periods presented herein.
We previously identified the following material weaknesses in internal control over financial reporting as of the ~~end~~year ended December 31, 2019:

a. Insufficient segregation of duties, oversight of work performed and ineffective compensating controls in our finance and accounting functions due to limited personnel;
b. Our information technology general controls related to user access security and change management controls related to our enterprise resource planning system were not designed effectively to provide an adequate audit trail for system change management controls and for the periodic review and testing of user access rights and permissions.
c. We did not sufficiently design and effectively implement controls to validate the completeness and accuracy of underlying data used in the performance of various controls over accounting transactions and disclosures;
d. We did not design sufficient protocols and procedures to retain adequate documentary evidence related to the timely review and approval of manual journal entries including the review of the underlying information at a sufficient level of detail; and
e. We did not sufficiently design and retain adequate documentary evidence supporting the design and operating effectiveness of certain important management review controls including the precision of review and evidence of procedures performed.

Table of Contents

Each of the ~~period covered by this quarterly report~~material weaknesses described above, combined with ineffective compensating financial close and review controls, had a pervasive impact on ~~Form 10-Q. Based~~our activity level cycles and accounts and creates a reasonable possibility that a material misstatement of the consolidated financial statements will not be prevented or detected on ~~that evaluation,~~a timely basis. Although we have continued to implement our ~~chief executive officer, our senior vice president, finance and accounting, and our vice president, finance~~remediation plan, these material weaknesses persist. Accordingly, management concluded that our disclosure controls and procedures were not effective ~~at the reasonable assurance level,~~ as of the end of the period covered by this report to ensure that information we are required to disclose in reports that we file or submit under the Securities Exchange Act of 1934 (1) is recorded, processed, summarized and reported within the time periods specified in Securities and Exchange Commission rules and forms, and (2) is accumulated and communicated to management, including our chief executive officer, senior vice president, finance and accounting, and our vice president, finance as appropriate to allow timely decisions regarding required disclosure, due to the existence of a material weakness in our internal control over financial reporting.September 30, 2020.

Changes in Internal Control over Financial Reporting

~~There~~In an effort to remediate our prior material weaknesses, in the third quarter of 2020, we continued to document our internal controls, including those adopted in prior quarters to address our material weaknesses, as we work towards our year end evaluation. Other than these remedial changes, there have been no changes in our internal control over financial reporting that have materially affected, or are reasonably likely to materially affect, our internal control over financial reporting during our third fiscal quarter ended September 30, ~~2019.~~2020.

PART II—OTHER INFORMATION
Item 1. Legal Proceedings.
None.
~~Not applicable.~~
Item 1A. Risk Factors.
Not applicable.

Item 2. Unregistered Sales of Equity Securities and Use of Proceeds.
None.
~~None.~~
Item 3. Defaults ~~Upon~~upon Senior Securities.
None.
~~None.~~
Item 4. Mine Safety Disclosures.
Not applicable.

Item 5. Other Information.
Not applicable.

Table of Contents

Item 6. Exhibits.
Exh. No.

~~Exh. No.~~
Exhibit Name
31.1
Rule 13a-14(a) Certification of Principal Executive Officer of Registrant
31.2
Rule 13a-14(a) Certification of Principal Financial Officer of Registrant
32.1
Section 1350 Certification
101.INS
XBRL Instance Document - the instance document does not appear in the Interactive Data File because its XBRL tags are embedded within the Inline XBRL document.
101.SCH
Inline XBRL Taxonomy Extension Schema
101.CAL
Inline XBRL Taxonomy Extension Calculation Linkbase
101.DEF
Inline XBRL Taxonomy Extension Definition Linkbase
101.LAB
Inline XBRL Taxonomy Extension Label Linkbase
101.PRE
Inline XBRL Taxonomy Extension Presentation Linkbase
104

The cover page from Semler Scientific's Quarterly Report on Form 10-Q for the three months ended September 30, 2020 is formatted in Inline XBRL and it is contained in Exhibit 101

1920
Table of Contents
SIGNATURES
Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized.
November 6, ~~2019~~ 2020
SEMLER SCIENTIFIC, INC.
By:
/s/ Douglas Murphy-Chutorian, M.D.
Douglas Murphy-Chutorian, M.D.
Chief Executive Officer
By:
/s/ Andrew B. Weinstein
Andrew B. Weinstein
Senior Vice President, Finance and Accounting

20

21

Delaware		26-1367393
(State or other jurisdiction of		(I.R.S. Employer
incorporation or organization)		Identification ~~Number)~~No.)

Title of each class		Trading Symbol(s)		Name of each exchange on which registered
N/A		N/A		N/A

Large Accelerated Filer	¨ ☐	Accelerated Filer	¨ ☒

Non-Accelerated Filer	¨ ☐	Smaller Reporting Company	x ☒

		Emerging growth company	x ☐

	x
	☒	QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934


	¨
	☐	TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

			Page
Part I.		Financial Information	1

Item 1.		Financial Statements	1
Item 2.		Management’s Discussion and Analysis of Financial Condition and Results of Operations	14 13
Item 3.		Quantitative and Qualitative Disclosures about Market Risk	18
Item 4.		Controls and Procedures	18

Part II.		Other Information	19

Item 1.		Legal Proceedings	19
Item 1A.		Risk Factors	19
Item 2.		Unregistered Sales of Equity Securities and Use of Proceeds	19
Item 3.		Defaults upon Senior Securities	19
Item 4.		Mine Safety Disclosures	19
Item 5.		Other Information	19
Item 6.	Exhibits	~~Exhibits~~	19 20

Signatures		20 21

	(Unaudited)						(Unaudited)
	For the three months ended September 30						For the nine months ended September 30
	2019			2018			2019			2018
Revenues	$	8,902		$	5,579		$	23,616		$	15,526
Operating expenses:
Cost of revenues		974			615			2,755			1,999
Engineering and product development		617			587			1,777			1,443
Sales and marketing		2,345			1,798			6,626			5,283
General and administrative		1,855			1,033			4,798			2,908
Total operating expenses		5,791			4,033			15,956			11,633
Income from operations		3,111			1,546			7,660			3,893

Interest expense		(2	)		(1	)		-			(57	)
Related party interest expense		-			(74	)		-			(206	)
Other expense		(1	)		(3	)		(3	)		(4	)
Other expense		(3	)		(78	)		(3	)		(267	)
Income before income taxes		3,108			1,468			7,657			3,626
Income tax (benefit) provision		(4,671	)		-			(4,594	)		-
Net income	$	7,779		$	1,468		$	12,251		$	3,626
Net income per share:
Basic	$	1.20		$	0.24		$	1.91		$	0.60
Diluted	$	0.96		$	0.19		$	1.51		$	0.48
Weighted average number of shares used in computing: basic and diluted income per share
Basic		6,492,501			6,086,489			6,410,588			5,998,460
Diluted		8,108,053			7,927,788			8,121,996			7,611,961

	*(Unaudited)* September 30,			December 31,
	2019			2018
Assets

Current Assets:
Cash	$	8,542		$	3,284
Trade accounts receivable, net of allowance for doubtful accounts of $36 and $52, respectively		3,271			2,801
Prepaid expenses and other current assets		274			153
Total current assets		12,087			6,238

Assets for lease, net		1,826			1,243
Property and equipment, net		220			223
Long-term deposits		15			15
Long-term deferred tax assets		4,709			-
Total assets	$	18,857		$	7,719

Liabilities and Stockholders' Equity

Current liabilities:
Accounts payable	$	669		$	280
Accrued expenses		2,909			2,797
Deferred revenue		1,169			435
Total current liabilities		4,747			3,512

Long-term liabilities:

Deferred rent		8			11
Total long-term liabilities		8			11

Stockholders' equity:
Common stock, $0.001 par value; 50,000,000 shares authorized; 6,552,916 and 6,349,985 shares issued, and 6,527,916 and 6,324,985 outstanding (treasury shares of 25,000 and 25,000), respectively		7			6
Additional paid-in capital		23,262			25,608
Accumulated deficit		(9,167	)		(21,418	)

Total stockholders' equity		14,102			4,196

Total liabilities and stockholders' equity	$	18,857		$	7,719

	Common Stock				Treasury Stock
	Shares Issued		Common Stock Amount		Shares			Amount		Additional Paid-In Capital		Accumulated Deficit			Total Stockholder's Equity
Balance at June 30, 2018		6,048,397	$	6		(25,000	)	$	-	$	24,484	$	(24,274	)	$	216

Issuance of Common Stock		12,943		-		-			-		294		-			294

Warrant Exercises		26,139		-		-			-		-		-			-

Stock Option Exercises		110,815		-		-			-		195		-			195

Stock-based Compensation		-		-		-			-		139		-			139

Net income for three months ended September 30, 2018		-		-		-			-		-		1,468			1,468

Balance at September 30, 2018		6,198,294	$	6		(25,000	)	$	-	$	25,112	$	(22,806	)	$	2,312

	Options Outstanding
	Number of Stock Options Outstanding			Weighted Average Exercise Price		Weighted Average Remaining Contractual Term (In Years)		Aggregate Intrinsic Value (in thousands)
Balance, January 1, 2019		1,761,447		$	3.18		6.84	$	55,000
Options exercised		(176,365	)		2.72
Balance, September 30, 2019		1,585,082		$	3.23		6.11	$	61,460
Exercisable as of September 30, 2019		1,451,359		$	3.05		5.96	$	56,535

	Three months ended September 30,						Nine months ended September 30,
	2019			2018			2019			2018
Expected term (in years)		-			-			-			5
Risk-free interest rate		-	%		-	%		-	%		2.02	%
Expected volatility		-	%		-	%		-	%		0.99	%
Expected dividend rate		-	%		-	%		-	%		-	%