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UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549 
FORM 10-Q
QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
For the quarterly period ended March 31,June 30, 2023
OR
TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
For the transition period from                     to                     .
Commission File Number: 001-36042
 PRECIGEN, INC.
(Exact name of registrant as specified in its charter)
Virginia 26-0084895
(State or other jurisdiction of
incorporation or organization)
 (I.R.S. Employer
Identification Number)
20374 Seneca Meadows Parkway 
Germantown,Maryland 20876
(Address of principal executive offices) (Zip Code)
(301) 556-9900
(Registrant's telephone number, including area code) 
N/A
(Former name, former address and former fiscal year, if changed since last report) 
Securities registered pursuant to Section 12(b) of the Exchange Act:
Title of each class Trading Symbol(s) Name of each exchange on which registered
Common Stock, no par value PGEN Nasdaq Global Select Market
Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.    Yes      No  
Indicate by check mark whether the registrant has submitted electronically every Interactive Data File required to be submitted pursuant to Rule 405 of Regulation S-T (§232.405 of this chapter) during the preceding 12 months (or for such shorter period that the registrant was required to submit such files).    Yes      No  
Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, a smaller reporting company, or an emerging growth company. See the definitions of "large accelerated filer," "accelerated filer," "smaller reporting company," and "emerging growth company" in Rule 12b-2 of the Exchange Act.
Large accelerated filer  Accelerated filer 
Non-accelerated filer  Smaller reporting company 
Emerging growth company
If an emerging growth company, indicate by check mark if the registrant has elected not to use the extended transition period for complying with any new or revised financial accounting standards provided pursuant to Section 13(a) of the Exchange Act.    
Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).    Yes      No  
As of April 30,July 31, 2023, 255,482,753 shares of common stock, no par value per share, were issued and outstanding.


Table of Contents
PRECIGEN, INC.
FORM 10-Q
TABLE OF CONTENTS
 
Item No.Item No. PageItem No. Page
1.1.1.
2.2.2.
3.3.3.
4.4.4.
1.1.1.
1A.1A.1A.
2.2.2.
3.3.3.
4.4.4.
5.5.5.
6.6.6.

Precigen®, UltraCAR-T®, RheoSwitch®, UltraVector®, RTS®, UltraPorator®, ActoBiotics® and RheoSwitch Therapeutic System® are our and/or our affiliates' registered trademarks in the United States and GenVec™, AdenoVerse™, ActoBio Therapeutics™, AttSite™, and Precigen Therapeutics™ are our and/or our affiliates' common law trademarks in the United States are our and/or our affiliates' common law trademarks in the United States. This Quarterly Report on Form 10-Q, or Quarterly Report, and the information incorporated herein by reference contain references to trademarks, service marks, and trade names owned by us or other companies. Solely for convenience, trademarks, service marks, and trade names referred to in this Quarterly Report and the information incorporated herein, including logos, artwork, and other visual displays, may appear without the ® or ™ symbols, but such references are not intended to indicate, in any way, that we will not assert, to the fullest extent under applicable law, our rights or the rights of the applicable licensor to these trademarks, service marks, and trade names. We do not intend our use or display of other companies' trade names, service marks, or trademarks to imply a relationship with, or endorsement or sponsorship of us by, any other companies. Other trademarks, trade names, and service marks appearing in this Quarterly Report are the property of their respective owners. Unless the context requires otherwise, references in this Quarterly Report to "Precigen", "we", "us", and "our" refer to Precigen, Inc.
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Special Note Regarding Forward-Looking Statements
This Quarterly Report contains forward-looking statements within the meaning of the Private Securities Litigation Reform Act of 1995, which statements involve substantial risks and uncertainties. All statements, other than statements of historical facts, included in this Quarterly Report, including statements regarding our strategy; future events, including their outcome or timing; future operations; future financial position; future revenue; projected costs; prospects; plans; objectives of management; and expected market growth, are forward-looking statements. The words "aim", "anticipate", "assume", "believe", "continue", "could", "due", "estimate", "expect", "intend", "may", "plan", "positioned", "potential", "predict", "project", "seek", "should", "target", "will", "would", and the negatives of these terms or similar expressions are intended to identify forward-looking statements, although not all forward-looking statements contain these identifying words. These statements may relate to, among other things: (i) the impact of the COVID-19 pandemic on our clinical trials, businesses, operating results, cash flows, and/or financial condition; (ii) the timeliness of regulatory approvals; (iii)(ii) our strategy and overall approach to our business model, our efforts to realign our business, and our ability to exercise more control and ownership over the development process and commercialization path; (iv)(iii) our ability to successfully enter new markets or develop additional product candidates, including the expected timing and results of investigational studies and preclinical and clinical trials, whether with our collaborators or independently; (v)(iv) our ability to consistently manufacture our product candidates on a timely basis or to establish agreements with third-party manufacturers; (vi)(v) our ability to successfully enter into optimal strategic relationships with our subsidiaries and operating companies that we may form in the future; (vii)(vi) our ability to hold or generate significant operating capital, including through partnering, asset sales, and operating cost reductions; (viii)(vii) actual or anticipated variations in our operating results; (ix)(viii) actual or anticipated fluctuations in competitors' or collaborators' operating results or changes in their respective growth rates; (x)(ix) our cash position; (xi)(x) market conditions in our industry; (xii)(xi) the volatility of our stock price; (xiii)(xii) the ability, and the ability of our collaborators, to protect our intellectual property and other proprietary rights and technologies; (xiv)(xiii) outcomes of pending and future litigation; (xv)(xiv) the rate and degree of market acceptance of any products developed by us, our subsidiaries, collaborations, or joint ventures, or JVs, and competition from existing technologies and products or new technologies and products that may emerge; (xvi)(xv) our ability to retain and recruit key personnel; (xvii)(xvi) expectations related to the use of proceeds from public offerings and other financing efforts; and (xviii)(xvii) estimates regarding expenses, future revenue, capital requirements, and needs for additional financing.
Forward-looking statements are based on our beliefs, assumptions, and expectations of our future performance, and may also concern our expectations relating to our subsidiaries and other affiliates. We caution you that the foregoing list may not contain all of the forward-looking statements made in this Quarterly Report.
We may not actually achieve the plans, intentions, or expectations disclosed in our forward-looking statements, and you should not place undue reliance on our forward-looking statements. Actual results or events could differ materially from the plans, intentions, and expectations disclosed in the forward-looking statements we make. We have included important factors in the cautionary statements included in this Quarterly Report, particularly in Part II, Item 1A, "Risk Factors," that could cause actual results or events to differ materially from the forward-looking statements that we make. Our forward-looking statements do not reflect the potential impact of any future acquisitions, mergers, dispositions, JVs, or investments that we may make.
You should read this Quarterly Report, the documents that we reference in this Quarterly Report, our Annual Report on Form 10-K for the year ended December 31, 2022, the other reports we have filed with the Securities and Exchange Commission, or SEC, and the documents that we have filed as exhibits to our filings with the SEC completely and with the understanding that our actual future results may be materially different from what we expect. We do not assume any obligation to update any forward-looking statements, whether as a result of new information, future events or otherwise, except as required by law.
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PART I. FINANCIAL INFORMATION
Item 1. Condensed Consolidated Financial Statements
Precigen, Inc. and Subsidiaries
Condensed Consolidated Balance Sheets
(Unaudited)
(Amounts in thousands, except share data)(Amounts in thousands, except share data)March 31,
2023
December 31,
2022
(Amounts in thousands, except share data)June 30,
2023
December 31,
2022
AssetsAssetsAssets
Current assetsCurrent assetsCurrent assets
Cash and cash equivalentsCash and cash equivalents$9,740 $4,858 Cash and cash equivalents$16,546 $4,858 
Restricted cashRestricted cash13,800 43,339 Restricted cash— 43,339 
Short-term investmentsShort-term investments94,351 51,092 Short-term investments71,888 51,092 
ReceivablesReceivablesReceivables
Trade, less allowance for credit losses of $184 as of March 31, 2023 and December 31, 2022, respectively1,771 978 
Trade, less allowance for credit losses of $184 as of both June 30, 2023 and December 31, 2022Trade, less allowance for credit losses of $184 as of both June 30, 2023 and December 31, 20221,354 978 
OtherOther13,751 12,826 Other13,052 12,826 
Prepaid expenses and otherPrepaid expenses and other4,330 5,066 Prepaid expenses and other2,792 5,066 
Total current assetsTotal current assets137,743 118,159 Total current assets105,632 118,159 
Long-term investmentsLong-term investments7,460 — Long-term investments7,127 — 
Property, plant and equipment, netProperty, plant and equipment, net6,908 7,329 Property, plant and equipment, net6,574 7,329 
Intangible assets, netIntangible assets, net43,848 44,455 Intangible assets, net42,656 44,455 
GoodwillGoodwill36,966 36,923 Goodwill36,966 36,923 
Right-of-use assetsRight-of-use assets7,617 8,086 Right-of-use assets7,623 8,086 
Other assetsOther assets1,004 1,025 Other assets949 1,025 
Total assetsTotal assets$241,546 $215,977 Total assets$207,527 $215,977 
The accompanying notes are an integral part of these condensed consolidated financial statements.
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Precigen, Inc. and Subsidiaries
Condensed Consolidated Balance Sheets
(Unaudited) 
(Amounts in thousands, except share data)(Amounts in thousands, except share data)March 31,
2023
December 31,
2022
(Amounts in thousands, except share data)June 30,
2023
December 31,
2022
Liabilities and Shareholders' EquityLiabilities and Shareholders' EquityLiabilities and Shareholders' Equity
Current liabilitiesCurrent liabilitiesCurrent liabilities
Accounts payableAccounts payable$3,809 $4,068 Accounts payable$2,510 $4,068 
Accrued compensation and benefitsAccrued compensation and benefits4,959 6,377 Accrued compensation and benefits4,820 6,377 
Other accrued liabilitiesOther accrued liabilities22,887 23,747 Other accrued liabilities3,257 4,997 
Settlement and Indemnification AccrualsSettlement and Indemnification Accruals18,750 18,750 
Deferred revenueDeferred revenue15 25 Deferred revenue15 25 
Current portion of long-term debtCurrent portion of long-term debt13,819 43,219 Current portion of long-term debt— 43,219 
Current portion of lease liabilitiesCurrent portion of lease liabilities1,244 1,209 Current portion of lease liabilities1,421 1,209 
Total current liabilitiesTotal current liabilities46,733 78,645 Total current liabilities30,773 78,645 
Deferred revenue, net of current portionDeferred revenue, net of current portion1,818 1,818 Deferred revenue, net of current portion1,818 1,818 
Lease liabilities, net of current portionLease liabilities, net of current portion6,623 6,992 Lease liabilities, net of current portion6,545 6,992 
Deferred tax liabilitiesDeferred tax liabilities2,239 2,263 Deferred tax liabilities2,181 2,263 
Total liabilitiesTotal liabilities57,413 89,718 Total liabilities41,317 89,718 
Commitments and contingencies (Note 14)Commitments and contingencies (Note 14)Commitments and contingencies (Note 14)
Shareholders' equityShareholders' equityShareholders' equity
Common stock, no par value, 400,000,000 shares authorized as of March 31, 2023 and December 31, 2022; 255,482,753 shares and 208,150,021 shares issued and outstanding as of March 31, 2023 and December 31, 2022, respectively— — 
Common stock, no par value, 400,000,000 shares authorized as of June 30, 2023 and December 31, 2022; 255,482,753 shares and 208,150,021 shares issued and outstanding as of June 30, 2023 and December 31, 2022, respectivelyCommon stock, no par value, 400,000,000 shares authorized as of June 30, 2023 and December 31, 2022; 255,482,753 shares and 208,150,021 shares issued and outstanding as of June 30, 2023 and December 31, 2022, respectively— — 
Additional paid-in capitalAdditional paid-in capital2,078,133 1,998,314 Additional paid-in capital2,080,348 1,998,314 
Accumulated deficitAccumulated deficit(1,891,301)(1,868,567)Accumulated deficit(1,911,620)(1,868,567)
Accumulated other comprehensive lossAccumulated other comprehensive loss(2,699)(3,488)Accumulated other comprehensive loss(2,518)(3,488)
Total shareholders' equityTotal shareholders' equity184,133 126,259 Total shareholders' equity166,210 126,259 
Total liabilities and shareholders' equityTotal liabilities and shareholders' equity$241,546 $215,977 Total liabilities and shareholders' equity$207,527 $215,977 
The accompanying notes are an integral part of these condensed consolidated financial statements.
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Precigen, Inc. and Subsidiaries
Condensed Consolidated Statements of Operations
(Unaudited)

(Amounts in thousands, except share and per share data)(Amounts in thousands, except share and per share data)Three Months Ended 
 March 31,
(Amounts in thousands, except share and per share data)Three Months Ended 
 June 30,
Six Months Ended 
 June 30,
20232022(Amounts in thousands, except share and per share data)2023202220232022
RevenuesRevenues
Product revenuesProduct revenues$324 $492 Product revenues$324 $621 648 1,113 
Service revenuesService revenues1,527 4,933 Service revenues1,438 2,213 2,965 7,146 
Other revenuesOther revenues— 88 Other revenues77 165 
Total revenuesTotal revenues1,851 5,513 Total revenues1,767 2,911 3,618 8,424 
Operating ExpensesOperating ExpensesOperating Expenses
Cost of products and servicesCost of products and services1,527 1,694 Cost of products and services1,697 1,811 3,224 3,505 
Research and developmentResearch and development12,163 11,801 Research and development11,874 11,954 24,037 23,755 
Selling, general and administrativeSelling, general and administrative11,639 13,689 Selling, general and administrative9,316 12,670 20,954 26,359 
Impairment of goodwillImpairment of goodwill— 482 Impairment of goodwill— — — 482 
Impairment of other noncurrent assetsImpairment of other noncurrent assets— 638 — 638 
Total operating expensesTotal operating expenses25,329 27,666 Total operating expenses22,887 27,073 48,215 54,739 
Operating lossOperating loss(23,478)(22,153)Operating loss(21,120)(24,162)(44,597)(46,315)
Other income (Expense), NetOther income (Expense), NetOther income (Expense), Net
Interest expenseInterest expense(324)(2,038)Interest expense(136)(2,063)(460)(4,101)
Interest incomeInterest income633 38 Interest income828 37 1,460 75 
Other income, netOther income, net380 198 Other income, net44 40 424 238 
Total other income (expense), netTotal other income (expense), net689 (1,802)Total other income (expense), net736 (1,986)1,424 (3,788)
Equity in net loss of affiliatesEquity in net loss of affiliates— (1)Equity in net loss of affiliates— — — (1)
Loss from continuing operations before income taxesLoss from continuing operations before income taxes(22,789)(23,956)Loss from continuing operations before income taxes(20,384)(26,148)(43,173)(50,104)
Income tax benefitIncome tax benefit55 58 Income tax benefit65 89 120 147 
Loss from continuing operationsLoss from continuing operations(22,734)(23,898)Loss from continuing operations(20,319)(26,059)(43,053)(49,957)
Income from discontinued operations, net of income taxesIncome from discontinued operations, net of income taxes— 4,647 Income from discontinued operations, net of income taxes— 8,424 — 13,071 
Net lossNet loss$(22,734)$(19,251)Net loss$(20,319)$(17,635)$(43,053)$(36,886)
Net Loss per ShareNet Loss per ShareNet Loss per Share
Net loss from continuing operations per share, basic and dilutedNet loss from continuing operations per share, basic and diluted$(0.10)$(0.12)Net loss from continuing operations per share, basic and diluted$(0.08)$(0.13)$(0.18)$(0.25)
Net income from discontinued operations per share, basic and dilutedNet income from discontinued operations per share, basic and diluted— 0.02 Net income from discontinued operations per share, basic and diluted— 0.04 — 0.07 
Net loss per share, basic and dilutedNet loss per share, basic and diluted$(0.10)$(0.10)Net loss per share, basic and diluted$(0.08)$(0.09)$(0.18)$(0.18)
Weighted average shares outstanding, basic and dilutedWeighted average shares outstanding, basic and diluted229,770,381 199,629,218 Weighted average shares outstanding, basic and diluted248,003,322 200,461,441 240,307,403 200,047,629 
The accompanying notes are an integral part of these condensed consolidated financial statements.
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Precigen, Inc. and Subsidiaries
Condensed Consolidated Statements of Comprehensive Loss
(Unaudited)
 
Three Months Ended 
 March 31,
Three Months Ended 
 June 30,
Six Months Ended 
 June 30,
(Amounts in thousands)(Amounts in thousands)20232022(Amounts in thousands)2023202220232022
Net lossNet loss$(22,734)$(19,251)Net loss$(20,319)$(17,635)$(43,053)$(36,886)
Other comprehensive income (loss):Other comprehensive income (loss):Other comprehensive income (loss):
Unrealized gain (loss) on investmentsUnrealized gain (loss) on investments262 (802)Unrealized gain (loss) on investments228 (202)491 (1,004)
Gain (loss) on foreign currency translation adjustmentsGain (loss) on foreign currency translation adjustments527 (1,100)Gain (loss) on foreign currency translation adjustments(47)(2,655)479 (3,755)
Comprehensive lossComprehensive loss$(21,945)$(21,153)Comprehensive loss$(20,138)$(20,492)$(42,083)$(41,645)
The accompanying notes are an integral part of these condensed consolidated financial statements.
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Precigen, Inc. and Subsidiaries
Condensed Consolidated Statements of Shareholders' Equity
(Unaudited)
 
(Amounts in thousands, except share data)(Amounts in thousands, except share data)Common StockAdditional
Paid-in
Capital
Accumulated
Other
Comprehensive
Income (Loss)
Accumulated
Deficit
Total
Shareholders'
Equity
(Amounts in thousands, except share data)Common StockAdditional
Paid-in
Capital
Accumulated
Other
Comprehensive
Income (Loss)
Accumulated
Deficit
Total
Shareholders'
Equity
SharesAmount(Amounts in thousands, except share data)SharesAmountAdditional
Paid-in
Capital
Balances at December 31, 2022208,150,021 $— $1,998,314 $(3,488)$(1,868,567)$126,259 
Balances at March 31, 2023Balances at March 31, 2023255,482,753 $— $2,078,133 $(2,699)$(1,891,301)$184,133 
Stock-based compensation expenseStock-based compensation expense— — 3,131 — — 3,131 Stock-based compensation expense— — 2,188 — — 2,188 
Shares issued upon vesting of restricted stock units and for exercises of stock options697,815 — — — — — 
Shares issued for accrued compensation2,206,469 — 3,361 — — 3,361 
Shares issued as payment for services465,808 — 545 — — 545 
Shares issued in public offering, net of issuance costs43,962,640 — 72,782 — — 72,782 
OtherOther— — 27 — — 27 
Net lossNet loss— — — — (22,734)(22,734)Net loss— — — — (20,319)(20,319)
Other comprehensive incomeOther comprehensive income— — — 789 — 789 Other comprehensive income— — — 181 — 181 
Balances at March 31, 2023255,482,753 $— $2,078,133 $(2,699)$(1,891,301)$184,133 
Balances at June 30, 2023Balances at June 30, 2023255,482,753 $— $2,080,348 $(2,518)$(1,911,620)$166,210 
(Amounts in thousands, except share data)(Amounts in thousands, except share data)Common StockAdditional
Paid-in
Capital
Accumulated
Other
Comprehensive
Income (Loss)
Accumulated
Deficit
Total
Shareholders'
Equity
(Amounts in thousands, except share data)Common StockAdditional
Paid-in
Capital
Accumulated
Other
Comprehensive
Income (Loss)
Accumulated
Deficit
Total
Shareholders'
Equity
SharesAmount(Amounts in thousands, except share data)SharesAmountAdditional
Paid-in
Capital
Balances at December 31, 2021206,739,874 $— $2,022,701 $203 $(1,915,556)$107,348 
Cumulative effect of adoption of ASU 2020-06
— (36,868)— 18,672 (18,196)
Balances at March 31, 2022Balances at March 31, 2022207,693,277 $— $1,991,670 $(1,699)$(1,916,135)$73,836 
Stock-based compensation expenseStock-based compensation expense— — 3,562 — — 3,562 Stock-based compensation expense— — 2,309 — — 2,309 
Shares issued upon vesting of restricted stock units and for exercises of stock options354,089 — — — 
Shares issued for accrued compensationShares issued for accrued compensation315,327 — 1,698 — — 1,698 Shares issued for accrued compensation456,744 — — — — — 
Shares issued as payment for services283,987 — 576 — — 576 
Noncash dividend— — — — — — 
Net lossNet loss— — — — (19,251)(19,251)Net loss— — — — (17,635)(17,635)
Other comprehensive lossOther comprehensive loss— — — (1,902)— (1,902)Other comprehensive loss— — — (2,857)— (2,857)
Balances at March 31, 2022207,693,277 $— $1,991,670 $(1,699)$(1,916,135)$73,836 
Balances at June 30, 2022Balances at June 30, 2022208,150,021 $— $1,993,979 $(4,556)$(1,933,770)$55,653 
The accompanying notes are an integral part of these condensed consolidated financial statements.








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Precigen, Inc. and Subsidiaries
Condensed Consolidated Statements of Shareholders' Equity
(Unaudited)

(Amounts in thousands, except share data)Common StockAdditional
Paid-in
Capital
Accumulated
Other
Comprehensive
Income (Loss)
Accumulated
Deficit
Total
Shareholders'
Equity
SharesAmount
Balances at December 31, 2022208,150,021 $— $1,998,314 $(3,488)$(1,868,567)$126,259 
Stock-based compensation expense— — 5,320 — — 5,320 
Shares issued upon vesting of restricted stock units and for exercises of stock options697,815 — — — — — 
Shares issued for accrued compensation2,206,469 — 3,361 — — 3,361 
Shares issued as payment for services465,808 — 545 — — 545 
Shares issued in public offering, net of issuance costs43,962,640 — 72,808 — — 72,808 
Net loss— — — — (43,053)(43,053)
Other comprehensive income— — — 970 — 970 
Balances at June 30, 2023255,482,753 $— $2,080,348 $(2,518)$(1,911,620)$166,210 
(Amounts in thousands, except share data)Common StockAdditional
Paid-in
Capital
Accumulated
Other
Comprehensive
Income (Loss)
Accumulated
Deficit
Total
Shareholders'
Equity
SharesAmount
Balances at December 31, 2021206,739,874 $— $2,022,701 $203 $(1,915,556)$107,348 
Cumulative effect of adoption of ASU 2020-06
— — (36,868)— 18,672 (18,196)
Stock-based compensation expense— — 5,871 — — 5,871 
Shares issued upon vesting of restricted stock units and for exercises of stock options354,089 — — — 
Shares issued for accrued compensation772,071 — 1,698 — — 1,698 
Shares issued as payment for services283,987 — 576 — — 576 
Net loss— — — — (36,886)(36,886)
Other comprehensive loss— — — (4,759)— (4,759)
Balances at June 30, 2022208,150,021 — $1,993,979 $(4,556)$(1,933,770)$55,653 
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Precigen, Inc. and Subsidiaries
Condensed Consolidated Statements of Cash Flows
(Unaudited)
Three Months Ended 
 March 31,
Six Months Ended 
 June 30,
(Amounts in thousands)(Amounts in thousands)20232022(Amounts in thousands)20232022
Cash flows from operating activitiesCash flows from operating activitiesCash flows from operating activities
Net lossNet loss$(22,734)$(19,251)Net loss$(43,053)$(36,886)
Adjustments to reconcile net loss to net cash used in operating activities:Adjustments to reconcile net loss to net cash used in operating activities:Adjustments to reconcile net loss to net cash used in operating activities:
Depreciation and amortizationDepreciation and amortization1,711 3,292 Depreciation and amortization3,404 6,518 
Loss on disposals of assets, net— 125 
(Gain) Loss on disposals of assets, net(Gain) Loss on disposals of assets, net(40)360 
Impairment of goodwillImpairment of goodwill— 482 Impairment of goodwill— 482 
Impairment of other noncurrent assetsImpairment of other noncurrent assets— 638 
Gain on debt retirementGain on debt retirement(106)— Gain on debt retirement(60)— 
Amortization of (discounts) premiums on investments, netAmortization of (discounts) premiums on investments, net(203)265 Amortization of (discounts) premiums on investments, net(721)468 
Equity in net loss of affiliatesEquity in net loss of affiliates— Equity in net loss of affiliates— 
Stock-based compensation expenseStock-based compensation expense3,131 3,562 Stock-based compensation expense5,320 5,871 
Shares issued as payment for servicesShares issued as payment for services545 576 Shares issued as payment for services545 576 
Provision for credit lossesProvision for credit losses— 334 Provision for credit losses— 735 
Accretion of debt discount and amortization of deferred financing costsAccretion of debt discount and amortization of deferred financing costs34 284 Accretion of debt discount and amortization of deferred financing costs60 596 
Deferred income taxesDeferred income taxes(55)(58)Deferred income taxes(113)(112)
Other noncash itemsOther noncash items105 
Changes in operating assets and liabilities:Changes in operating assets and liabilities:Changes in operating assets and liabilities:
Receivables:Receivables:Receivables:
TradeTrade(793)(3,638)Trade(376)(7,016)
OtherOther(925)21 Other(226)10 
Prepaid expenses and otherPrepaid expenses and other743 2,102 Prepaid expenses and other2,274 4,284 
Other assetsOther assets(27)42 Other assets83 
Accounts payableAccounts payable(249)(588)Accounts payable(1,537)(963)
Accrued compensation and benefitsAccrued compensation and benefits1,936 (3,462)Accrued compensation and benefits1,804 (1,015)
Other accrued liabilitiesOther accrued liabilities(1,597)(1,086)Other accrued liabilities(1,740)1,862 
Deferred revenueDeferred revenue22 (1,767)Deferred revenue(10)(2,184)
Lease liabilitiesLease liabilities195 (18)Lease liabilities229 (40)
Related party payablesRelated party payables— (1)Related party payables— (78)
Other long-term liabilitiesOther long-term liabilities(16)— Other long-term liabilities— (50)
Net cash used in operating activitiesNet cash used in operating activities(18,388)(18,783)Net cash used in operating activities(34,156)(25,836)
The accompanying notes are an integral part of these condensed consolidated financial statements.
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Precigen, Inc. and Subsidiaries
Condensed Consolidated Statements of Cash Flows
(Unaudited)

Three Months Ended 
 March 31,
Six Months Ended 
 June 30,
(Amounts in thousands)(Amounts in thousands)20232022(Amounts in thousands)20232022
Cash flows from investing activitiesCash flows from investing activitiesCash flows from investing activities
Purchases of investmentsPurchases of investments$(108,163)$— Purchases of investments$(128,563)$— 
Sales and maturities of investmentsSales and maturities of investments57,909 18,000 Sales and maturities of investments101,852 36,000 
Purchases of property, plant and equipmentPurchases of property, plant and equipment(154)(1,579)Purchases of property, plant and equipment(255)(3,297)
Proceeds from sale of assetsProceeds from sale of assets— 147 Proceeds from sale of assets61 438 
Net cash (used in) provided by investing activitiesNet cash (used in) provided by investing activities(50,408)16,568 Net cash (used in) provided by investing activities(26,905)33,141 
Cash flows from financing activitiesCash flows from financing activitiesCash flows from financing activities
Proceeds from issuance of shares, net of issuance costsProceeds from issuance of shares, net of issuance costs73,501 — Proceeds from issuance of shares, net of issuance costs72,808 — 
Payments of long-term debtPayments of long-term debt(29,270)(164)Payments of long-term debt(43,099)(277)
Payments of cost to retire long-term debtPayments of cost to retire long-term debt(57)— Payments of cost to retire long-term debt(120)— 
Proceeds from stock option exercisesProceeds from stock option exercises— Proceeds from stock option exercises— 
Net cash provided by(used in) financing activitiesNet cash provided by(used in) financing activities44,174 (163)Net cash provided by(used in) financing activities29,589 (276)
Effect of exchange rate changes on cash, cash equivalents, and restricted cashEffect of exchange rate changes on cash, cash equivalents, and restricted cash(28)(230)Effect of exchange rate changes on cash, cash equivalents, and restricted cash(172)(471)
Net decrease in cash, cash equivalents, and restricted cashNet decrease in cash, cash equivalents, and restricted cash(24,650)(2,608)Net decrease in cash, cash equivalents, and restricted cash(31,644)6,558 
Cash, cash equivalents, and restricted cashCash, cash equivalents, and restricted cashCash, cash equivalents, and restricted cash
Beginning of periodBeginning of period48,596 43,343 Beginning of period48,596 43,343 
End of periodEnd of period$23,946 $40,735 End of period$16,952 $49,901 
Supplemental disclosure of cash flow informationSupplemental disclosure of cash flow informationSupplemental disclosure of cash flow information
Cash paid during the period for interestCash paid during the period for interest$924 $3,535 Cash paid during the period for interest$1,156 $3,568 
Significant noncash activitiesSignificant noncash activities
Accrued compensation paid in equity awardsAccrued compensation paid in equity awards$3,361 $1,698 Accrued compensation paid in equity awards$3,361 $1,698 
Purchases of property and equipment included in accounts payable and other accrued liabilitiesPurchases of property and equipment included in accounts payable and other accrued liabilities24 251 Purchases of property and equipment included in accounts payable and other accrued liabilities19 234 
Proceeds from sale of assets included in accounts receivableProceeds from sale of assets included in accounts receivable— 132 Proceeds from sale of assets included in accounts receivable— 147 
Issuance costs included in accounts payable and other accrued liabilities719 — 
The following table provides a reconciliation of the cash, cash equivalents, and restricted cash balances as of March 31,June 30, 2023 and December 31, 2022 as shown above:
March 31,
2023
December 31,
2022
June 30,
2023
December 31,
2022
Cash and cash equivalentsCash and cash equivalents$9,740 $4,858 Cash and cash equivalents$16,546 $4,858 
Restricted cashRestricted cash13,800 43,339 Restricted cash— 43,339 
Restricted cash included in other assetsRestricted cash included in other assets406 399 Restricted cash included in other assets406 399 
Cash, cash equivalents, and restricted cashCash, cash equivalents, and restricted cash$23,946 $48,596 Cash, cash equivalents, and restricted cash$16,952 $48,596 
The accompanying notes are an integral part of these condensed consolidated financial statements.
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Precigen, Inc. and Subsidiaries
Notes to the Condensed Consolidated Financial Statements
(Unaudited)
(Amounts in thousands, except share and per share data)
1. Organization

Precigen, Inc. ("Precigen"), a Virginia corporation, is a dedicated discovery and clinical-stage biopharmaceutical company advancing the next generation of gene and cell therapies with the overall goal of improving outcomes for patients with significant unmet medical needs. Precigen is leveraging its proprietary technology platforms to develop product candidates designed to target urgent and intractable diseases in its core therapeutic areas of immuno-oncology, autoimmune disorders, and infectious diseases. Precigen has developed an extensive pipeline of therapies across multiple indications within these core focus areas. Precigen’Precigen’s primary operations are located in the State of Maryland.

Precigen also has two wholly owned operating subsidiaries. Precigen ActoBio, Inc. ("ActoBio"), and Exemplar Genetics,LLC, doing business as Precigen Exemplar ("Exemplar").

ActoBio is pioneering a proprietary class of microbe-based biopharmaceuticals that enable expression and local delivery of disease-modifying therapeutics, with its primary operations located in Ghent, Belgium.

Exemplar is committed to enabling the study of life-threatening human diseases through the development of MiniSwine Yucatan miniature pig research models and services, as well as enabling the production of cells and organs in its genetically engineered swine for regenerative medicine applications. Exemplar’s primary operations are located in the State of Iowa.
Precigen and its consolidated subsidiaries are hereinafter referred to as the "Company."
2. Summary of Significant Accounting Policies
Basis of Presentation
The accompanying condensed consolidated financial statements are unaudited and have been prepared in accordance with accounting principles generally accepted in the United States of America ("U.S. GAAP"). Certain information and footnote disclosures normally included in the Company's annual financial statements have been condensed or omitted. These interim condensed consolidated financial statements, in the opinion of management, reflect all normal recurring adjustments necessary for fair statement of the Company's financial position as of March 31,June 30, 2023 and results of operations and cash flows for the interim periods ended March 31,June 30, 2023 and 2022. The year-end condensed consolidated balance sheet data was derived from the Company's audited financial statements but does not include all disclosures required by U.S. GAAP. These interim financial results are not necessarily indicative of the results to be expected for the year ending December 31, 2023, or for any other future annual or interim period. The accompanying interim unaudited condensed consolidated financial statements should be read in conjunction with the audited consolidated financial statements and related notes thereto included in the Company's Annual Report on Form 10-K for the year ended December 31, 2022.
The accompanying condensed consolidated financial statements reflect the operations of Precigen and its majority-owned subsidiaries. All intercompany accounts and transactions have been eliminated.
Liquidity
Management believes that existing liquid assets as of March 31,June 30, 2023 will allow the Company to continue its operations for at least a year from the issuance date of these condensed consolidated financial statements. These condensed consolidated financial statements are presented in United States dollars. Additionally, the condensed consolidated financial statements have been prepared on a going concern basis, which contemplates the realization of assets and the satisfaction of liabilities in the normal course of business. During the threesix months ended March 31,June 30, 2023, the Company incurred a net loss of $22,734$43,053 and, as of March 31,June 30, 2023, had an accumulated deficit of $1,891,301.$1,911,620. Management expects operating losses and negative cash flows to continue for the foreseeable future and, as a result, the Company will require additional capital to fund its operations and execute its business plan. In the absence of a significant source of recurring revenue, the Company's long-term success is dependent upon its ability to continue to raise additional capital in order to fund ongoing research and development (which could occur through debt or equity issuances, sales or partnerships of non-core assets, collaborations or out-licensing of core or non-core assets, or other transactions), adequately satisfy or renegotiate debt obligations, obtain regulatory approval of its therapeutic product candidates, successfully commercialize its therapeutic product candidates, generate revenue, meet its obligations and, ultimately, attain profitable operations.
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Risks and Uncertainties
The Company is subject to a number of risks similar to those of other companies conducting high-risk, early-stage research and development of therapeutic product candidates. Principal among these risks are dependence on key individuals and intellectual property, competition from other products and companies, and the technical risks associated with the successful research, development, and clinical manufacturing of its and its collaborators' therapeutic product candidates.

Research and Development

The Company considers that regulatory requirements inherent in the research and development of new products preclude it from capitalizing such costs. Research and development expenses include salaries and related costs of research and development personnel, including stock-based compensation expense, costs to acquire technology rights, contract research organizations and consultants, facilities, materials and supplies associated with research and development projects as well as various laboratory studies. Costs incurred in conjunction with collaboration and licensing arrangements are included in research and development. Indirect research and development costs include depreciation, amortization, and other indirect overhead expenses.

The Company has research and development arrangements with third parties that include upfront and milestone payments. As of March 31,June 30, 2023 and December 31, 2022, the Company had research and development commitments with third parties that had not yet been incurred totaling $18,153$19,525 and $19,909, respectively. The commitments are generally cancellable by the Company by providing written notice at least sixty days before the desire termination date.

Cash and Cash Equivalents

All highly liquid investments with an original maturity of three months or less at the date of purchase are considered to be cash equivalents. Cash balances at a limited number of banks may periodically exceed insurable amounts. The Company believes that it mitigates its risk by investing in or through major financial institutions. Recoverability of investments is dependent upon the performance of the issuer. As of March 31,June 30, 2023 and December 31, 2022, the Company had cash equivalent investments in highly liquid money market accounts at major financial institutions of $5,626$11,390 and $3, respectively, which isare included in cash and cash equivalents in the accompanying consolidated balance sheets.

Restricted Cash

Included in the condensed consolidated balance sheet as of March 31, 2023 and December 31, 2022, is restricted cash of $13,800 and $43,339, respectively.$43,339. This cash iswas restricted for the permitted purposes related to our Convertible Notes, including the resolution of such notes.

Short-term and Long-Term Investments

As of March 31,June 30, 2023 and December 31, 2022 short-term and long-term investments include United States government debt and agency securities and certificates of deposit. The Company determines the appropriate classification as short-term or long-term at the time of purchase based on original maturities and management's reasonable expectation of sales and redemption. The Company reevaluates such classification at each balance sheet date.

Fair Value of Financial Instruments

Fair value is the price that would be received to sell an asset or paid to transfer a liability in an orderly transaction between market participants at the measurement date. As such, fair value is a market-based measurement that should be determined based on assumptions that market participants would use in pricing an asset and liability. As a basis for considering such assumptions, the Company uses a three-tier fair value hierarchy that prioritizes the inputs used in its fair value measurements. The hierarchy gives the highest priority to unadjusted quoted prices in active markets for identical assets or liabilities (Level 1 measurements) and the lowest priority to unobservable inputs (Level 3 measurements). The three levels of the fair value hierarchy are as follows:

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Level 1:Quoted prices in active markets for identical assets and liabilities;
Level 2:Other than quoted prices included in Level 1 inputs that are observable for the asset or liability, either directly or indirectly; and
Level 3:Unobservable inputs for the asset or liability used to measure fair value to the extent that observable inputs are not available.
Net Loss per Share
Basic net loss per share is calculated by dividing net loss attributable to common shareholders by the weighted average shares outstanding during the period, without consideration of common stock equivalents. Diluted net loss per share is calculated by adjusting weighted average shares outstanding for the dilutive effect of common stock equivalents outstanding for the period, using the treasury-stock method and the if-converted method. For purposes of the diluted net loss per share calculation, shares to be issued pursuant to convertible debt, stock options, RSUs, and warrants are considered to be common stock equivalents but are excluded from the calculation of diluted net loss per share because their effect would be anti-dilutive as described in the next paragraph, therefore,paragraph. Therefore, basic and diluted net loss per share were the same for all periods presented. See Note 11 for the further discussion of the Company's Share Lending Agreement.
In accordance with Accounting Standards Codification (“ASC”) 260, the control number for determining whether including potential common shares in the diluted earnings per share, or EPS, computation would be antidilutiveanti-dilutive is income (loss) from continuing operations. As a result, if there is a loss from continuing operations, diluted EPS would be computed in the same manner as basic EPS is computed, even if the entity has net income after including discontinued operations. The following potentially dilutive securities as of March 31,June 30, 2023 and 2022, have been excluded from the above computations of diluted weighted average shares outstanding for the three and six months then ended as they would have been anti-dilutive:
March 31,June 30,
2023202220232022
OptionsOptions16,945,209 16,034,553 Options22,325,095 15,492,339 
Restricted stock unitsRestricted stock units1,877,308 1,185,205 Restricted stock units1,877,308 714,687 
WarrantsWarrants— 121,888 Warrants— 121,888 
TotalTotal18,822,517 17,341,646 Total24,202,403 16,328,914 

In addition, the Company's Convertible Notes, convertprior to their retirement in the second quarter of 2023, were convertible at an exercise price of approximately $17.05 per share of common stock, representing approximately 812,178 shares at March 31, 2023 and 11,732,440 shares at March 31,June 30, 2022. The shares underlying the ConvertiblesConvertible Notes were considered for the dilutive calculation but were excluded in all periods presented as their effect is antidilutive.was anti-dilutive. See Note 9 for further discussion of the Convertible Notes.
Segment Information

The Company's chief operating decision maker ("CODM") regularly reviews disaggregated financial information for various operating segments. The financial information regularly reviewed by the CODM consists of (i) Biopharmaceuticals and (ii) Exemplar, each an operating segment which werethat was also determined to be a reportable segments.segment. The Biopharmaceuticals reportable segment is primarily comprised of the Company's legal entities of Precigen and ActoBio. See Note 1 for a description of Precigen, ActoBio and Exemplar. Prior to January 1, 2023, corporate expenses were not allocated to the segments and were managed at a consolidated level. Corporate expenses, include costs associated with general and administrative functions, including the Company's finance, accounting, legal, human resources, information technology, corporate communication, and investor relations functions. Corporate expenses exclude interest expense, depreciation and amortization, gain or loss on disposals of assets, stock-based compensation expense, loss on settlement agreement, and equity in net loss of affiliates and include unrealized and realized gains and losses on the Company's securities portfolio as well as dividend income. Beginning in the first quarter of 2023, the Company allocated certain corporate expenses to Precigen as its operations directly benefited from these expenditures, and are now included in the Biopharmaceuticals reportable segment. As presented in Note 15, the prior year period has been reclassified to conform to the current period’s presentation.
Use of Estimates
The preparation of financial statements in conformity with U.S. GAAP requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities, the disclosure of contingent assets and liabilities at the
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date of the financial statements, and the reported amounts of revenues and expenses during the reporting periods. Actual results could differ from those estimates.
Adopted Accounting Pronouncements
In August 2020, the Financial Accounting Standards Board ("FASB") issued Accounting Standards Update ("ASU") 2020-06, Debt—Debt with Conversion and Other Options (Subtopic 470-20) and Derivatives and Hedging—Contracts in Entity's Own Equity (Subtopic 815-40)—Accounting for Convertible Instruments and Contracts in an Entity's Own Equity ("ASU 2020-06"). Under ASU 2020-06, the embedded conversion features are no longer separated from the host contract for convertible instruments with conversion features that are not required to be accounted for as derivatives under Topic 815, or that do not result in substantial premiums accounted for as paid-in capital. Consequently, a convertible debt instrument will be accounted for as a single liability measured at its amortized cost, as long as no other features require bifurcation and recognition as derivatives. The new guidance also requires the if-converted method to be applied for all convertible instruments.
We adopted ASU 2020-06 on January 1, 2022 using the modified retrospective transition method, which resulted in an increase to our reported long-term debt outstanding, net of current portion, of $18,196, a decrease to our additional paid-in capital of $36,868, and a corresponding cumulative-effect reduction to our opening accumulated deficit of $18,672. The adoption of ASU 2020-06 iswas expected to reduce non-cash interest expense related to existing convertible debt outstanding by approximately $11,800 for the year ending December 31, 2022, and did not have an impact on our consolidated cash flows. The use of the if-converted method did not have an impact on our overall earnings per share calculation.
Recently Issued Accounting Pronouncements Not Yet Adopted
There are no accounting standards which have not yet been adopted that are expected to have a significant impact on our financial statements and related disclosures.
3. Discontinued Operations
Where applicable, the notes to the accompanying condensed consolidated financial statements have been updated to reflect information pertaining to the Company's continuing operations based on the discontinued operations summarized below.
Trans Ova
As part of the Company's strategic shift to becoming a healthcare company, onin August 18, 2022, the Company completed the sale of 100% of the issued and outstanding membership interests in its wholly-owned subsidiary, Trans Ova, to Spring Bidco LLC (the “Buyer”), a Delaware limited liability company for $170,000 and up to $10,000 in cash earn-out payments contingent upon the performance of Trans Ova in each of 2022 and 2023, consisting of $5,000 for each year (the “Transaction”). The Company received $162,306 in proceeds, net of certain transaction costs, on August 18, 2022, after giving effect to the preliminary closing purchase price adjustments. The final working capital adjustment of $936 was received in the fourth quarter of 2022. In February 2023, the buyer notified the Company that Trans Ova did not meet the financial measures required in 2022 in order to require the first $5,000 earn-out payment.
The Company elected to account for the contingent consideration arrangement as a gain contingency in accordance with ASC 450, Contingencies (Subtopic 450-30). Under this approach, the Company recognizes the contingent consideration receivable in earnings after the contingency is resolved. Accordingly, to determine the initial gain on the sale of Trans Ova, the Company did not include an amount related to the contingent consideration arrangement as part of the consideration received.
In connection with the Transaction, the Company as of March 31, 2023, holdsheld restricted cash of $13,800, in a segregated account to be used for certain permitted purposes, including resolution of the Company’s outstanding Convertible Notes which were retired in the second quarter of 2023, as discussed further in Note 9. In addition, the Company is required to indemnify the Buyer for certain expenses incurred post close (related to covenants and certain additional specified liabilities including certain patent infringement lawsuits), if incurred, in amounts not to exceed $5,750, which$5,750. Such indemnification was recorded as a reduction of the gain on divestiture in the third quarter of 2022, and is included in other accrued liabilitiesSettlement and Indemnification accruals as of March 31,June 30, 2023. To date, the Company has not received an indemnification claim.claim of $675 that has not been paid as of June 30, 2023.
There were no discontinued operations related to Trans Ova for the three months ended March 31, 2023. The following table presents the financial results of discontinued operations related to Trans Ova for the three and six months ended March 31,June 30, 2022:
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Product revenues$8,232 
Service revenues18,276 
Total revenues26,508 
Cost of products and services15,405 
Research and development959 
Selling, general and administrative5,887 
Total operating expenses22,251 
Operating income4,257 
Other income, net390 
Income from discontinued operations$4,647 
Three months ended June 30,Six Months Ended 
 June 30,
2022
Product revenues$8,940 $17,172 
Service revenues23,501 41,777 
Total revenues32,441 58,949 
Cost of products and services17,415 32,820 
Research and development908 1,867 
Selling, general and administrative6,124 12,011 
Total operating expenses24,447 46,698 
Operating income7,994 12,251 
Other income, net430 820 
Income from discontinued operations$8,424 $13,071 
The following table presents the significant noncash items, purchases of property, plant and equipment, and proceeds from sales of assets for the discontinued operations related to Trans Ova for the threesix months ended March 31,June 30, 2022 that are included in the accompanying condensed consolidated statements of cash flows.
Adjustments to reconcile net income to net cash used in operating activities
Depreciation and amortization$1,3742,765 
(Gain) Loss on disposal of assets125360 
Stock-based compensation expense3868 
Provision for credit losses334735 
Cash flows from investing activities
Purchases of property, plant and equipment(1,083)(2,629)
Proceeds from sale of assets147438 
Cash flows from financing activities
Payments of long-term debt(112)(225)

4. Collaboration and Licensing Revenue
The Company's collaborations and licensing agreements may provide for multiple promises to be satisfied by the Company and typically include a license to the Company's technology platforms, participation in collaboration committees, and performance of certain research and development services. Based on the nature of the promises in the Company's collaboration and licensing agreements, the Company typically combines most of its promises into a single performance obligation because the promises are highly interrelated and not individually distinct. Options to acquire additional services are considered to determine if they constitute material rights. At contract inception, the transaction price is typically the upfront payment received and is allocated to the performance obligations. The Company has determined the transaction price should be recognized as revenue based on its measure of progress under the agreement primarily based on inputs necessary to fulfill the performance obligation.

The Company determines whether collaborations and licensing agreements are individually significant for disclosure based on a number of factors, including total revenue recorded by the Company pursuant to collaboration and licensing agreements, collaborators or licensees with equity method investments, or other qualitative factors. Collaboration and licensing revenues generated from consolidated subsidiaries are eliminated in consolidation.
There were no material amounts recognized as revenue for the three and six months ended March 31,June 30, 2023 and 2022.
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Alaunos License Agreement
On April 3, 2023, the Company entered into an amended and restated exclusive license agreement (the “License Agreement”), with Alaunos Therapeutics (“Alaunos”). The License Agreement amended and replaced the terms of the Exclusive License Agreement by and between the Company and Alaunos, dated October 5, 2018.
Pursuant to the terms of the License Agreement, the Company has granted Alaunos an exclusive, worldwide, royalty-free, sub-licensable license to research, develop and commercialize T-cell receptor products, designed for neoantigens for the treatment of cancer or the treatment and prevention of human papilloma virus, or HPV, to the extent that the primary reason for such treatment or prevention is to prevent cancer, which is referred to as the HPV Field. The Company has also granted Alaunos an exclusive, worldwide, royalty-free, sub-licensable license for certain patents relating to the Sleeping Beauty technology to research, develop and commercialize TCR Products for both neoantigens and shared antigens for the treatment of cancer and in the HPV Field. The Company also granted Alaunos certain non-exclusive rights with respect to shared antigens, NK cells and gamma delta T-cells. Alaunos will be solely responsible for all aspects of the research, development and commercialization of the exclusively licensed products for the treatment of cancer and will not be subject to a diligence obligation with respect to such efforts.
Pursuant to the License Agreement, Alaunos no longer has any rights to certain of the Company’s technology including with respect to (i) products utilizing the Company’s RheoSwitch® gene switch, or RTS to express IL-12, or the IL-12 Products, for the treatment of cancer, (ii) chimeric antigen receptor, or CAR, products including CD19 and BCMA, or (iii) products utilizing an additional construct that expresses RTS IL-12, or Gorilla IL-12 Products, for the treatment of cancer and in the HPV Field. In addition, the Company may research, develop and commercialize products for the treatment of cancer, outside of the products exclusively licensed to Alaunos. Alaunos will provide the Company with certain access to information and materials related to Alaunos’s prior use of the Company’s technologies that is no longer within the scope of the License Agreement.
In consideration of the licenses and other rights granted by the Company, Alaunos will pay the Company an annual license fee of $0.1 million. Neither Alaunos nor the Company will have any other obligations with respect to the payment of milestones or royalties on products developed in connection with the License Agreement.
The Company has agreed that, during the term of the License Agreement, it will not use the licensed intellectual property to research, develop or commercialize any exclusive product for the treatment of cancer. The License Agreement will terminate on a product-by-product and/or country-by-country basis upon the expiration of the last to expire patent claim for a licensed product. In addition, Alaunos may terminate the License Agreement on a country-by-country or program-by-program basis following written notice to the Company, and either party may terminate the License Agreement following notice of a material breach. The License Agreement also contains customary representations, warranties and covenants from Alaunos and the Company, as well as customary provisions related to indemnity, confidentiality and other matters.
Deferred Revenue
Deferred revenue primarily consists of upfront and milestone consideration received for the Company's collaboration and licensing agreements. Revenue is recognized as services are performed. The arrangements classified as long-term are not active while the respective counterparties evaluate the status of the project and its desired future development activities since the Company cannot reasonably estimate the amount of service to be performed over the next year.
DeferredAs of June 30, 2023 and December 31, 2022, the Company had long-term deferred revenue consistedfor collaboration and licensing arrangements of the following:$1,818, and deferred revenue classified as current related to prepaid products and services of $15 and $25, respectively.
March 31,
2023
December 31,
2022
Collaboration and licensing agreements$1,818 $1,818 
Prepaid product and service revenues15 15 
Other— 10 
Total$1,833 $1,843 
Current portion of deferred revenue$15 $25 
Long-term portion of deferred revenue1,818 1,818 
Total$1,833 $1,843 



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5. Short-term and Long-term Investments
The Company's investments are classified as available-for-sale. The following table summarizes the amortized cost, gross unrealized gains and losses, and fair value of available-for-sale investments as of March 31,June 30, 2023:
Amortized
Cost
Gross
Unrealized
Gains
Gross
Unrealized
Losses
Aggregate
Fair Value
Amortized
Cost
Gross
Unrealized
Gains
Gross
Unrealized
Losses
Aggregate
Fair Value
U.S. government debt securitiesU.S. government debt securities$96,820 $— $(498)$96,322 U.S. government debt securities$73,047 $15 $(276)$72,786 
U.S. agency securitiesU.S. agency securities992 — — 992 U.S. agency securities991 (13)986 
Certificates of depositCertificates of deposit4,497 — — 4,497 Certificates of deposit5,247 — (4)5,243 
TotalTotal$102,309 $— $(498)$101,811 Total$79,285 $23 $(293)$79,015 
The following table summarizes the amortized cost, gross unrealized gains and losses, and fair value of available-for-sale investments as of December 31, 2022:
Amortized
Cost
Gross
Unrealized
Gains
Gross
Unrealized
Losses
Aggregate
Fair Value
U.S. government debt securities$51,755 $— $(760)$50,995 
Certificates of deposit97 — — 97 
Total$51,852 $— $(760)$51,092 
The estimated fair value of available-for-sale investments classified by their contractual maturities as of March 31,June 30, 2023 was:
Due within one year$94,35171,888 
After one year through two years7,4607,127 
Total$101,81179,015 
Changes in market interest rates and bond yields cause certain investments to fall below their cost basis, resulting in unrealized losses on investments. We do not intend to sell these investments nor is it more likely than not that the Company will be required to sell these investments, prior to maturity or recovery of amortized cost.
6. Fair Value Measurements
The carrying amount of cash and cash equivalents, receivables, accounts payable, accrued compensation and benefits, other accrued liabilities, and related party payables approximate fair value due to the short maturity of these instruments.
Assets
The following table presents the placement in the fair value hierarchy of financial assets that are measured at fair value on a recurring basis as of March 31,June 30, 2023:
Quoted Prices in Active Markets
(Level 1)
Significant Other Observable Inputs
(Level 2)
Significant Unobservable Inputs
(Level 3)
March 31,
2023
Quoted Prices in Active Markets
(Level 1)
Significant Other Observable Inputs
(Level 2)
Significant Unobservable Inputs
(Level 3)
June 30,
2023
AssetsAssetsAssets
U.S. government debt securitiesU.S. government debt securities$— $96,322 $— $96,322 U.S. government debt securities$— $72,786 $— $72,786 
U.S. agency securitiesU.S. agency securities992 992 U.S. agency securities986 986 
Certificates of depositCertificates of deposit— 4,497 — 4,497 Certificates of deposit— 5,243 — 5,243 
TotalTotal$— $101,811 $— $101,811 Total$— $79,015 $— $79,015 
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The following table presents the placement in the fair value hierarchy of financial assets that are measured at fair value on a recurring basis as of December 31, 2022:
Quoted Prices in Active Markets
(Level 1)
Significant Other Observable Inputs
(Level 2)
Significant Unobservable Inputs
(Level 3)
December 31,
2022
Assets
U.S. government debt securities$— $50,995 $— $50,995 
Certificates of deposit— 97 — 97 
Total$— $51,092 $— $51,092 
The method used to estimate the fair value of the Level 2 short-term and long-term debt investments in the tables above is based on professional pricing sources for identical or comparable instruments, rather than direct observations of quoted prices in active markets.
Liabilities
The calculated fair value of the Convertible Notes (Note 9) was approximately $14,000 and $43,000 as of March 31, 2023 and December 31, 2022, respectively, and iswas based on the recent third-party trades of the instrument as of the balance sheet date. The fair value of the Convertible Notes is classified as Level 2 within the fair value hierarchy as there is not an active market for the Convertible Notes, however, third-party trades of the instrument are considered observable inputs. The Convertible Notes are reflected on the accompanying condensed consolidated balance sheets at amortized cost, which was $13,819 and $43,219 as of March 31, 2023 and December 31, 2022,2022.

See Note 8 for discussion of non-recurring fair value estimates used in calculating an impairment charge recorded during the threesix months ended March 31, 2022June 30, 2022.
7. Property, Plant and Equipment, Net
Property, plant and equipment consist of the following:
March 31,
2023
December 31,
2022
June 30,
2023
December 31,
2022
Land and land improvementsLand and land improvements$164 $164 Land and land improvements$164 $164 
Buildings and building improvementsBuildings and building improvements2,592 2,592 Buildings and building improvements2,629 2,592 
Furniture and fixturesFurniture and fixtures507 457 Furniture and fixtures508 457 
EquipmentEquipment18,428 18,006 Equipment18,541 18,006 
Leasehold improvementsLeasehold improvements4,325 4,333 Leasehold improvements4,324 4,333 
Breeding stockBreeding stock128 123 Breeding stock138 123 
Computer hardware and softwareComputer hardware and software4,607 4,562 Computer hardware and software4,638 4,562 
Construction and other assets in progressConstruction and other assets in progress151 531 Construction and other assets in progress106 531 
30,902 30,768 31,048 30,768 
Less: Accumulated depreciation and amortizationLess: Accumulated depreciation and amortization(23,994)(23,439)Less: Accumulated depreciation and amortization(24,474)(23,439)
Property, plant and equipment, netProperty, plant and equipment, net$6,908 $7,329 Property, plant and equipment, net$6,574 $7,329 
Depreciation expense was $506$475 and $653$616 for the three months ended March 31,June 30, 2023 and 2022, respectively, and $981 and $1,269 for the six months ended June 30, 2023 and 2022, respectively.
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8. Goodwill and Intangible Assets, Net
The changes in the carrying amount of goodwill for the threesix months ended March 31,June 30, 2023 were as follows:
Balance at December 31, 2022$36,923 
Foreign currency translation adjustments43 
Balance at March 31,June 30, 2023$36,966 
The Company recorded $482 of goodwill impairment related to the total goodwill assigned to one reporting unit within the biopharmaceutical segment during the first quarter of 2022.
The Company had $14,483 of cumulative impairment losses as of both March 31,June 30, 2023 and December 31, 2022.
Intangible assets consist of the following as of March 31,June 30, 2023:
Gross Carrying AmountAccumulated AmortizationNetGross Carrying AmountAccumulated AmortizationNet
Patents, developed technologies and know-howPatents, developed technologies and know-how$81,553 $(37,705)$43,848 Patents, developed technologies and know-how$81,598 $(38,942)$42,656 
Customer relationshipsCustomer relationships1,600 (1,600)— Customer relationships1,600 (1,600)— 
TrademarksTrademarks200 (200)— Trademarks200 (200)— 
TotalTotal$83,353 $(39,505)$43,848 Total$83,398 $(40,742)$42,656 
Intangible assets consist of the following as of December 31, 2022:
Gross Carrying AmountAccumulated AmortizationNet
Patents, developed technologies and know-how$80,892 $(36,437)$44,455 
Customer relationships1,600 (1,600)— 
Trademarks200 (200)— 
Total$82,692 $(38,237)$44,455 
Amortization expense was $1,205$1,218 and $1,265$1,219 for the three months ended March 31,June 30, 2023 and 2022, respectively, and $2,423 and $2,484 for the six months ended June 30, 2023 and 2022, respectively.
9. Lines of Credit and Short-Term Debt
Lines of Credit
Exemplar has a $2,500 revolving line of credit that matures on October 31, 2023. As of March 31,June 30, 2023, the line of credit borebears interest at a stated rate of 7.00% per annum. As of March 31,June 30, 2023 and December 31, 2022, there was no outstanding balance on the line of credit.
Short-Term Debt
As of both March 31, 2023 and December 31, 2022, $13,819 and $43,219 of short- termshort-term debt consisted solely of the Company's Convertible Notes.
Convertible Debt
Precigen Convertible Notes
In July 2018, Precigen completed a registered underwritten public offering of $200,000 aggregate principal amount of Convertible Notes and issued the Convertible Notes under an indenture (the "Base Indenture") between Precigen and The Bank of New York Mellon Trust Company, N.A., as trustee, as supplemented by the First Supplemental Indenture (together with the
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Base Indenture, the "Indenture"). Precigen received net proceeds of $193,958 after deducting underwriting discounts and offering expenses of $6,042.Indenture.
The Convertible Notes arewere senior unsecured obligations of Precigen and bearbore interest at a rate of 3.50% per year, payable semiannually in arrears on January 1 and July 1 of each year beginning on January 1, 2019. The Convertible Notes maturematured on
20


July 1, 2023, and are repayable in cash, unless earlieralthough certain notes were repurchased or converted. Upon conversion by the holders, the Convertible Notes are convertible into cash, shares of Precigen's common stock or a combination of cash and shares, at Precigen's election. The initial conversion rate of the Convertible Notes is 58.6622 shares of Precigen common stock per $1,000 principal amount of Convertible Notes (equivalent to an initial conversion price of approximately $17.05 per share of common stock). The conversion rate is subject to adjustment upon the occurrence of certain events, but will not be adjusted for any accrued and unpaid interest. In addition, following certain corporate events that occur prior to the maturity date as definedbeginning in the Indenture, Precigen will increase the conversion rate for a holder who elects to convert its Convertible Notes in connection with such a corporate event in certain circumstances. Prior to April 1,third quarter of 2022 (as discussed further below).On June 30, 2023, the holders may convert theCompany re-purchased all remaining outstanding Convertible Notes at their option only upon the satisfaction of the following circumstances:
During any calendar quarter commencing after the calendar quarter ended on September 30, 2018, if the last reported sales price of Precigen's common stock for at least 20 trading days (whether or not consecutive) during the last 30 consecutive trading days of the immediately preceding calendar quarter is greater than or equal to 130% of the conversion price on each applicable trading day;
During the five business day period after any five consecutive trading day period in which the trading price, as defined in the Indenture, for the Convertible Notes is less than 98% of the product of the last reported sales price of Precigen's common stock and the conversion rate for the Convertible Notes on each such trading day; or
Upon the occurrence of specified corporate events as defined in the Indenture.
None of the above events allowing for conversion prior to April 1, 2023 occurred during the three months ended March 31, 2023. On or after April 1, 2023 until June 30, 2023, holders may convert their Convertible Notes at any time. Precigen may not redeem the Convertible Notes prior to the maturity date.
If Precigen undergoes a fundamental change, as defined in the Indenture, holders of the Convertible Notes may require Precigen to repurchase for cash all or any portion of their Convertible Notes at a fundamental change repurchase price equal to 100% of the principal amount of the Convertible Notes to be repurchased,par plus accrued and unpaid interest to, but excluding, the fundamental change repurchase date. The Indenture contains customary events of default, as defined in the agreement, and, if any of the events occur, could require repayment of a portion or all of the Convertible Notes, including accrued and unpaid interest. Additionally, the Indenture provides that Precigen shall not consolidate with or merge with or into, or sell, convey, transfer or lease all or substantially all of its properties and assets to, another entity, unless (i) the surviving entity is organized under the laws of the United States and such entity expressly assumes all of Precigen's obligations under the Convertible Notes and the Indenture; and (ii) immediately after such transaction, no default or event of default has occurred and is continuing under the Indenture.
The net proceeds received from the issuance of the Convertible Notes were initially allocated between long-term debt, the liability component, in the amount of $143,723, and additional paid-in capital, the equity component, in the amount of $50,235. Additional paid-in capital was further reduced by $13,367 of deferred taxes resulting from the difference between the carrying amount and the tax basis of the Convertible Notes that is created by the equity component, which also resulted in deferred tax benefit recognized from the reversal of valuation allowances on the then current year domestic operating losses in the same amount.

As described in Note 2, the Company adopted ASU 2020-06 on January 1, 2022. Pursuant to ASU 2020-06, the equity components of the Convertible Notes separated from the debt components as required under the cash conversion model is required to be recombined into the Convertible Notes as a single instrument upon the adoption of ASU 2020-06. The Convertible Notes shall be accounted for as if the conversion option had not been separated. As the Company elected the modified retrospective approach, the difference between the accounting under the cash conversion model and new model after the adoption of ASU 2020-06 (i.e., the single debt instrument with no separation) was recorded as an adjustment on the adoption date (i.e., January 1, 2022) through accumulated deficit. Tax accounting consequences of the adoption also required the reversal of the previously reported deferred tax benefit on the date of adoption.

Adoption of ASU 2020-06 resulted in an increase to long-term debt outstanding, net of current portion, of $18,196, a decrease to additional paid-in capital of $36,868, and a decrease to accumulated deficit of $18,672. Interest expense recognized on the
20


Convertible Notes in future periods will be reduced as a result of accounting for the convertible debt instrument as a single liability measured at its amortized cost.

As discussed in Note 3, in connection with the sale of Trans Ova in 2022, the Company transferred a total of $200,000 into a segregated account to be used for certain permitted purposes, including resolution of the Company's outstanding ConvertiblesConvertible Notes. During the year December 31, 2022 and subsequently, the Company executed open market purchases of a portion of the outstanding Convertible Notes. During threethe six months ended March 31,June 30, 2023, the Company retired, $29,495through open market purchases and payment upon maturity, $43,340 of principal balance from these purchases and recorded a gain on extinguishment of debt of approximately $54,$61, which was recorded within Other income (expense), net, within the condensed consolidated statements of operations. The Company had previously retired $156,660 of principal balance from purchases during the year ended December 31, 2022. As of March 31,June 30, 2023, $13,800 ofno restricted cash remained in the segregated account noted above, for permitted purposes including the resolutionas all of the Company's outstanding Convertible Notes.

As of March 31, 2023, the outstanding principal balance of the Convertible Notes was $13,845 and the carrying value of the Convertible Notes was $13,819. The effective interest rate on the Convertible Notes, including amortization of the long-term debt discount and debt issuance costs, is 4.25%. As of March 31, 2023, the unamortized long-term debt discount and debt issuance costs totaled $26.had been retired.
The components of interest expense related to the Convertible Notes were as follows:
 Three Months Ended 
 March 31,
 20232022
Cash interest expense$289 $1,750 
Non-cash interest expense34 284 
Total interest expense$323 $2,034 
Accrued interest of $127 is included in other accrued liabilities on the accompanying condensed consolidated balance sheet as of March 31, 2023.
 Three Months Ended 
 June 30,
Six Months Ended 
 June 30,
 2023202220232022
Cash interest expense$108 $1,750 $397 $3,500 
Non-cash interest expense26 312 60 596 
Total interest expense$134 $2,062 $457 $4,096 
10. Income Taxes
For the three and six months ended March 31,June 30, 2023, the Company calculated its tax benefit using the estimated annual effective tax rate method. The rate is the ratio of estimated annual income tax expense related to estimated pretax loss from continuing operations, excluding significant unusual or infrequently occurring items. As a result of the pretax losses anticipated for the full year which are not benefited, this rate has been calculated and applied to the year-to-date interim period’s ordinary income or loss on a jurisdiction by jurisdiction basis to determine the income tax expense/benefit allocated to the year-to-date period. The annual effective tax rate is revised, if necessary, at the end of each interim period based on the Company’s most current best estimate. The Company recorded $55 $65 and $120 of income tax benefit from continuing operations for the three and six months ended March 31,June 30, 2023., respectively. The effective tax rate differs from the U.S. statutory tax rate, primarily as a result of the change in valuation allowance required.

For the three and six months ended March 31,June 30, 2022, the Company calculated its tax benefit using an estimate of actual taxable income or loss for the period, rather than estimating the Company's annual effective income tax rate, as the Company was unable to reliably estimate its income for the full year. The Company recorded $58$89 and $147 of income tax benefit from continuing operations for the three and six months ended March 31, 2022.June 30, 2022, respectively. The effective tax rate differs from the U.S. statutory tax rate, primarily as a result of the change in valuation allowance required.
21



The Company's net deferred tax assets are offset by a valuation allowance due to the Company's history of net losses combined with an inability to confirm recovery of the tax benefits of the Company's tax attributes and other net deferred tax assets. A portion of the Company’s tax attributes are subject to annual limitations under Section 382 of the Internal Revenue Code. In assessing the realizability of deferred tax assets, management considers whether it is more likely than not that some portion or all of the deferred tax assets will not be realized. The ultimate realization of deferred tax assets is dependent upon the generation of future taxable income during the periods in which those temporary differences become deductible. Management
21


considers the scheduled reversal of deferred tax liabilities, projected future taxable income and tax planning strategies in making this assessment.
11. Shareholders' Equity
Issuances of Precigen Common Stock
In January 2023, the Company closed a public offering of 43,962,640 shares of its common stock, resulting in net proceeds of $72,782,$72,808, after deducting underwriting discounts, fees, and other underwritingoffering expenses. Of the 43,962,640 shares, 11,517,712 shares were purchased by related parties and their affiliates, including the Company's Chief Executive Officer, its Chairman of the Board of Directors and his affiliates, and certain other of the Company's officers.
We completed the offering of shares of common stock, utilizing a number of underwriters, with J.P. Morgan Securities LLC is acting as representative of the underwriters. The underwriting fee was equal to the public offering price per share of common stock less the amount paid by the underwriters to us per share of common stock, The services provided by JP Morgan Securities LLC were in the ordinary course of their role as lead underwriter, for which they received customary fees and commissions.
See Note 9 for discussion regarding conversion features of the convertible notes.
Share Lending Agreement
Concurrently with the offering of the Convertible Notes (Note 9), Precigen entered into a share lending agreement (the "Share Lending Agreement") with J.P. Morgan Securities LLC (the "Share Borrower") pursuant to which Precigen loaned and delivered 7,479,431 shares of its common stock (the "Borrowed Shares") to the Share Borrower. The Share Lending Agreement will terminate, and the Borrowed Shares will be returned to Precigen within five business days of such termination, upon (i) termination by the Share Borrower or (ii) the earliest to occur of (a) October 1, 2023 and (b) the date, if any, on which the Share Lending Agreement is either mutually terminated or terminated by one party upon a default by the other party. The Share Borrower maintains collateral in the form of cash or certain permitted non-cash collateral with a market value at least equal to the market value of the Borrowed Shares as security for the obligation of the Share Borrower to return the Borrowed Shares when required by the terms above. The Borrowed Shares were offered and sold to the public at a price of $13.37 per share under a registered offering (the "Borrowed Shares Offering"). Precigen did not receive any proceeds from the sale of the Borrowed Shares to the public or any lending fees from the Share Lending Agreement. The Share Borrower or its affiliates received all the proceeds from the sale of the Borrowed Shares to the public. Affiliates of Third Security purchased all of the shares of common stock in the Borrowed Shares Offering.
The Share Lending Agreement was entered into at fair value and met the requirements for equity classification. Therefore, the value is netted against the issuance of the Borrowed Shares in additional paid-in capital. Additionally, the Borrowed Shares are not included in the denominator for loss per share attributable to Precigen shareholders unless the Share Borrower defaults on the Share Lending Agreement.
At-the-Market Sales Agreement
On August 9, 2022, the Company entered into a Controlled Equity Offering Sales Agreement (the “Sales Agreement”) with Cantor Fitzgerald & Co. (the “Agent”), pursuant to which the Company may issue and sell from time to time shares of the Company’s common stock, no par value per share (the “Shares”), through the Agent. The offering and sale of up to $100,000 of the Shares has been registered under the Securities Act of 1933. The Company has no obligation to sell any of the Shares under the Sales Agreement, and may at any time suspend or terminate the offering of its common stock pursuant to the Sales Agreement upon notice and subject to other conditions. The Company intends to use the proceeds of any sales to fund the development of clinical and preclinical product candidates and for working capital and other general corporate purposes.
No shares were sold in connection with the Sales Agreement during the six months ended June 30, 2023 nor for the year ended December 31, 2022.
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Components of Accumulated Other Comprehensive Loss
The components of accumulated other comprehensive loss are as follows:
March 31,
2023
December 31,
2022
June 30,
2023
December 31,
2022
Unrealized loss on investmentsUnrealized loss on investments$(498)$(760)Unrealized loss on investments$(270)$(760)
Loss on foreign currency translation adjustmentsLoss on foreign currency translation adjustments(2,201)(2,728)Loss on foreign currency translation adjustments(2,248)(2,728)
Total accumulated other comprehensive lossTotal accumulated other comprehensive loss$(2,699)$(3,488)Total accumulated other comprehensive loss$(2,518)$(3,488)
12. Share-Based Payments
The Company measures the fair value of stock options and restricted stock units ("RSUs") issued to employees and nonemployees as of the grant date for recognition of stock-based compensation expense. Stock-based compensation expense for employees and nonemployees is recognized over the requisite service period, which is typically the vesting period. Stock-based compensation costs included in the condensed consolidated statements of operations are presented below:
Three Months Ended 
 March 31,
Three Months Ended 
 June 30,
Six Months Ended 
 June 30,
202320222023202220232022
Cost of products$$
Cost of services25 
Cost of products and servicesCost of products and services$17 $30 $35 $63 
Research and developmentResearch and development509 545 Research and development582 589 1,087 1,134 
Selling, general and administrativeSelling, general and administrative2,609 2,946 Selling, general and administrative1,589 1,660 4,198 4,606 
Discontinued operationsDiscontinued operations— 38 Discontinued operations— 30 — 68 
TotalTotal$3,131 $3,562 Total$2,188 $2,309 $5,320 $5,871 
Precigen Stock OptionEquity Incentive Plans
In April 2008,August 2013, Precigen adopted the 2008 Equity Incentive Plan (the "2008 Plan") for employees and nonemployees pursuant to which Precigen's board of directors granted share-based awards, including stock options, to officers, key employees and nonemployees. Upon the effectiveness of the 2013 Omnibus Incentive Plan (the "2013("the 2013 Plan"), no new awards may be granted under the 2008 Plan. As of March 31, 2023, there were 14,843 stock options outstanding under the 2008 Plan.
Precigen adopted the 2013 Plan for employees and nonemployees pursuant to which Precigen's board of directors may grant share-based awards, including stock options, andrestricted stock units, shares of common stock and other awards, to employees, officers, consultants, advisors, and nonemployee directors. TheUpon the effectiveness of the 2023 Omnibus Incentive Plan in June 30, 2023, as discussed in the next paragraph, (the "2023 Plan"), no new awards may be granted under the 2013 Plan became effectiveand any awards granted under the 2013 Plan prior to the effectiveness of the 2023 Plan will remain outstanding under such plan and will continue to vest and/or become exercisable in August 2013,accordance with their original terms and asconditions. As of March 31,June 30, 2023, there were 37,000,00019,167,088 stock options and 862,356 RSUs outstanding under the 2013 Plan.
In April 2023, Precigen adopted the 2023 Plan, which became effective upon shareholder approval in June 2023. The 2023 Plan permits the grant of share-based awards, including stock options, restricted stock awards, and RSUs and other awards, to officers, employees and nonemployees. The 2023 Plan authorizes for issuance pursuant to awards under the 2023 Plan an aggregate of 16,418,137 shares authorized(which is comprised of 12,500,000 shares, plus 3,918,137 shares remaining available for issuance under the 2013 Plan as of which 13,772,359 stock options and 862,356 RSUsthe adoption of the 2023 Plan). As of June 30, 2023, no awards were outstanding and 9,396,501 shares were available for grant. In April 2023, Precigen granted approximately 5,600,000 options in connection withunder the Company's annual long-term incentive compensation award for its' employees.plan.
In April 2019, Precigen adopted the 2019 Incentive Plan for Non-Employee Service Providers (the "2019 Plan"), which became effective upon shareholder approval in June 2019. The 2019 Plan permits the grant of share-based awards, including stock options, restricted stock awards, and RSUs, to non-employee service providers, including board members. As of March 31,June 30, 2023, there were 12,000,000 shares authorized for issuance under the 2019 Plan, of which 3,158,007 stock options and 1,014,952 RSUs were outstanding and 4,502,466 shares were available for grant.


23


Stock option activity was as follows:
Number of SharesWeighted Average Exercise PriceWeighted Average Remaining Contractual Term (Years)Number of SharesWeighted Average Exercise PriceWeighted Average Remaining Contractual Term (Years)
Balances at December 31, 2022Balances at December 31, 202215,201,276 $10.41 6.87Balances at December 31, 202215,201,276 $10.41 6.87
GrantedGranted1,834,069 1.11 Granted7,507,869 1.19 
ExercisedExercised— — Exercised— — 
ForfeitedForfeited(69,375)5.29 Forfeited(220,625)2.74 
ExpiredExpired(20,761)19.15 Expired(163,425)17.74 
Balances at March 31, 202316,945,209 9.41 6.90
Exercisable at March 31, 202311,559,913 11.40 6.29
Balances at June 30, 2023Balances at June 30, 202322,325,095 7.33 7.54
Exercisable at June 30, 2023Exercisable at June 30, 202311,759,874 11.22 6.14
RSU activity was as follows:
Number of Restricted Stock UnitsWeighted Average Grant Date Fair ValueWeighted Average Remaining Contractual Term (Years)Number of Restricted Stock UnitsWeighted Average Grant Date Fair ValueWeighted Average Remaining Contractual Term (Years)
Balances at December 31, 2022Balances at December 31, 2022697,815 $2.66 0.13Balances at December 31, 2022697,815 $2.66 0.13
GrantedGranted4,083,777 1.01 Granted4,083,777 1.01 
VestedVested(2,904,284)1.70 Vested(2,904,284)1.37 
ForfeitedForfeited— — Forfeited— — 
Balances at March 31, 20231,877,308 1.07 0.68
Balances at June 30, 2023Balances at June 30, 20231,877,308 1.07 0.43
Precigen currently uses authorized and unissued shares to satisfy share award exercises.
13. Operating Leases
The Company leases certain facilities and equipment under operating leases. Leases with a lease term of twelve months or less are considered short-term leases and are not recorded on the balance sheet, and expense for these leases is recognized over the term of the lease. All other leases have remaining terms of one to nineseven years, some of which may include options to extend the lease and some of which may include options to terminate the lease within one year. The Company uses judgment to determine whether it is reasonably possible to extend the lease beyond the initial term or terminate before the initial term ends and the length of the possible extension or early termination. The leases are renewable at the option of the Company and do not contain residual value guarantees, covenants, or other restrictions.
The components of lease costs were as follows:
Three Months Ended 
 March 31,
Three Months Ended 
 June 30,
Six Months Ended 
 June 30,
202320222023202220232022
Operating lease costsOperating lease costs$615 $627 Operating lease costs$617 $613 $1,232 $1,240 
Short-term lease costsShort-term lease costs20 53 Short-term lease costs10 49 30 102 
Variable lease costsVariable lease costs120 103 Variable lease costs86 121 206 224 
Lease costsLease costs$755 $783 Lease costs$713 $783 $1,468 $1,566 
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As of March 31,June 30, 2023, maturities of lease liabilities, excluding short-term and variable leases, for continuing operations were as follows:
20232023$1,596 2023$1,222 
202420241,844 20242,029 
202520251,817 20251,903 
202620261,474 20261,503 
202720271,228 20271,238 
202820281,260 20281,260 
ThereafterThereafter1,847 Thereafter1,847 
TotalTotal11,066 Total11,002 
Present value adjustmentPresent value adjustment(3,199)Present value adjustment(3,036)
TotalTotal$7,867 Total$7,966 
Current portion of operating lease liabilitiesCurrent portion of operating lease liabilities$1,244 Current portion of operating lease liabilities$1,421 
Long-term portion of operating lease liabilitiesLong-term portion of operating lease liabilities6,623 Long-term portion of operating lease liabilities6,545 
TotalTotal$7,867 Total$7,966 
Other information related to operating leases in continuing operations was as follows:
March 31,
2023
December 31,
2022
June 30,
2023
December 31,
2022
Weighted average remaining lease term (years)Weighted average remaining lease term (years)5.966.09Weighted average remaining lease term (years)5.616.09
Weighted average discount rateWeighted average discount rate11.05 %11.05 %Weighted average discount rate11.08 %11.05 %
Three Months Ended 
 March 31,
Six Months Ended 
 June 30,
2023202220232022
Supplemental disclosure of cash flow informationSupplemental disclosure of cash flow informationSupplemental disclosure of cash flow information
Cash paid for operating lease liabilitiesCash paid for operating lease liabilities$463 $639 Cash paid for operating lease liabilities$1,022 $1,264 
Operating lease right-of-use assets obtained in exchange for new lease liabilities (includes new leases or modifications of existing leases)Operating lease right-of-use assets obtained in exchange for new lease liabilities (includes new leases or modifications of existing leases)26 — Operating lease right-of-use assets obtained in exchange for new lease liabilities (includes new leases or modifications of existing leases)373 65 
14. Commitments and Contingencies
Contingencies

In October 2020, several shareholder class action lawsuits were filed in the United States District Court for the Northern District of California on behalf of certain purchasers of the Company's common stock. The complaints name as defendants the Company and certain of its current and former officers. The plaintiffs' claims challenged disclosures about the MBP program from May 10, 2017 to March 1, 2019. In March 2021, the courtCourt granted an order consolidating the claims and, in April 2021, appointed a lead plaintiff and lead counsel in the case, captioned In re Precigen Securities Litigation, Case No. 5:20-cv-06936-BLF (N.D. Cal.). On May 18, 2021, the lead plaintiff filed an Amended Class Action Complaint. On August 2, 2021, the defendants moved to dismiss the Amended Class Action Complaint. On September 27, 2021, the lead plaintiff filed a Second Amended Class Action Complaint in lieu of a response to the defendants’ motion to dismiss. On November 3, 2021, the defendants moved to dismiss the Second Amended Class Action Complaint and on May 31, 2022, the courtCourt granted the defendants’ motion to dismiss the Second Amended Class Action Complaint with leave to amend. On August 1, 2022, the lead plaintiff filed a Third Amended Class Action Complaint.

On August 2, 2022, the Court granted the parties' request to conduct a private mediation session to explore potential resolution of the action. On November 17, 2022, at the conclusion of the mediation session, the parties executed a memorandum of understanding that agreed in principle to resolve the claims asserted in the securities class action. The settlement provides for a payment to the plaintiff class of $13,000. The proposed settlement requires final negotiationOn July 7, 2023, the Court granted preliminary approval of the terms of settlement and both preliminary andscheduled a final approval by the court.hearing for October 2023. Should the courtCourt not approve the proposed settlement or if the proposed settlement otherwise does not become final, the parties will be returned to their litigation postures prior to the agreement in principle to
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Table of Contents
principle to settle. In the event that the litigation resumes, the defendants intend to move to dismiss the plaintiff’s Third Amended Class Action Complaint. As of both March 31,June 30, 2023 and December 31,2022, the Company recorded an accrual of $13,000 in Other accrued liabilitiesSettlement and Indemnification accruals on the condensed consolidated balance sheets for this matter. In addition, the Company separately recognized an insurance receivable asset of $12,525$12,545 and $12,411 within Receivables, other, on the condensed consolidated balance sheets as of March 31,June 30, 2023 and December 31,2022, , respectively.

In December 2020, a derivative shareholder action, captioned Edward D. Wright, derivatively on behalf of Precigen, Inc. F/K/A Intrexon Corp. v. Alvarez et al, was filed in the Circuit Court for Fairfax County in Virginia on behalf of Precigen, Inc. asserting similar claims under state law against Precigen's current directors and certain officers. The plaintiff seeks damages, forfeiture of benefits received by defendants, and an award of reasonable attorneys' fees and costs. The case was stayed by an order entered on June 14, 2021. On September 24, 2021, an individual shareholder filed a lawsuit in the Circuit Court for Henrico County styled Kent v. Precigen, Inc., Case CL21-6349. The Kent action demands inspection of certain books and records of the Company pursuant to Virginia statutory and common law. On April 1, 2022, the courtCourt denied the demurrer and referred the matter to a hearing on the merits. The Company intends to defend the lawsuits vigorously; however, there can be no assurances regarding the ultimate outcome of these lawsuits.
In the course of its business, the Company is involved in litigation or legal matters, including governmental investigations. Such matters are subject to many uncertainties and outcomes are not predictable with assurance. The Company accrues liabilities for such matters when it is probable that future expenditures will be made and such expenditures can be reasonably estimated. As of March 31,June 30, 2023, the Company does not believe that any such matters, individually or in the aggregate, will have a material adverse effect on the Company's business, financial condition, results of operations, or cash flows.
15. Segments
The Company's CODM assesses the operating performance of and allocates resources for several operating segments using Segment Adjusted EBITDA as a basis. Management believes this financial metric is a key indicator of operating results since it excludes noncash revenues and expenses that are not reflective of the underlying business performance of an individual enterprise. The Company defines Segment Adjusted EBITDA as net income (loss) before (i) interest expense, (ii) income tax expense or benefit, (iii) depreciation and amortization, (iv) stock-based compensation expense, (v) loss on settlement agreements where noncash consideration is paid, (vi) adjustments for accrued bonuses paid in equity awards, (vii) gain or loss on disposals of assets, (viii) loss on impairment of goodwill and other noncurrent assets, (ix) equity in net loss of affiliates, and (x) recognition of previously deferred revenue associated with upfront and milestone payments as well as cash outflows from capital expenditures and investments in affiliates, but includes proceeds from the sale of assets in the period sold.
Because the Company uses Segment Adjusted EBITDA as its primary measure of segment performance, it has included this measure in its discussion of segment operating results. The Company has also disclosed revenues from external customers and intersegment revenues for each reportable segment. The CODM does not use total assets by segment to evaluate segment performance or allocate resources, and accordingly, these amounts are not required to be disclosed. The Company's segment presentation excludes amounts related to the operations of Trans Ova which are reported as discontinued operations (Note 3).
For the three and six months ended March 31,June 30, 2023, the Company's reportable segments were (i) Biopharmaceuticals and (ii) Exemplar. These identified reportable segments met the quantitative thresholds to be reported separately for the threesix months ended March 31,June 30, 2023. See Note 2 for a description of Biopharmaceuticals. See Note 1 for a description of Exemplar.
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Segment Adjusted EBITDA by reportable segment was as follows:
Three Months Ended 
 March 31,
Three Months Ended 
 June 30,
Six Months Ended 
 June 30,
202320222023202220232022
BiopharmaceuticalsBiopharmaceuticals$(20,764)$(20,839)Biopharmaceuticals$(17,880)$(19,997)$(39,277)$(40,874)
ExemplarExemplar121 3,558 Exemplar(83)795 38 4,353 
Segment Adjusted EBITDA for reportable segmentsSegment Adjusted EBITDA for reportable segments$(20,643)$(17,281)Segment Adjusted EBITDA for reportable segments$(17,963)$(19,202)$(39,239)$(36,521)

The table below reconciles Segment Adjusted EBITDA for reportable segments to consolidated net loss from continuing operations before income taxes:
Three Months Ended 
 March 31,
Three Months Ended 
 June 30,
Six Months Ended 
 June 30,
202320222023202220232022
Segment Adjusted EBITDA for reportable segmentsSegment Adjusted EBITDA for reportable segments$(20,643)$(17,281)Segment Adjusted EBITDA for reportable segments$(17,963)$(19,202)$(39,239)$(36,521)
All Other Segment Adjusted EBITDAAll Other Segment Adjusted EBITDA— — — — 
Remove cash paid for capital expenditures, net of proceeds from sale of assets, and cash paid for investments in affiliatesRemove cash paid for capital expenditures, net of proceeds from sale of assets, and cash paid for investments in affiliates101 172 255 668 
Interest IncomeInterest Income828 37 1,461 75 
Remove cash paid for capital expenditures, net of proceeds from sale of assets, and cash paid for investments in affiliates154 496 
Add recognition of previously deferred revenue associated with upfront and milestone payments— 1,446 
Other expenses:Other expenses:Other expenses:
Interest expenseInterest expense(324)(2,038)Interest expense(136)(2,063)(460)(4,101)
Depreciation and amortizationDepreciation and amortization(1,711)(1,918)Depreciation and amortization(1,693)(1,835)(3,404)(3,753)
Loss on disposals of assets— — 
Gain (loss) on disposals of assetsGain (loss) on disposals of assets40 — 40 — 
Impairment lossesImpairment losses— (482)Impairment losses— (638)— (1,120)
Stock-based compensation expenseStock-based compensation expense(3,132)(3,524)Stock-based compensation expense(2,188)(2,279)(5,320)(5,803)
Adjustment related to accrued bonuses paid in equity awardsAdjustment related to accrued bonuses paid in equity awards3,360 1,698 Adjustment related to accrued bonuses paid in equity awards— — 3,361 1,698 
Equity in net loss of affiliatesEquity in net loss of affiliates— (1)Equity in net loss of affiliates— — — (1)
OtherOther— — Other— (105)— (105)
Shares issue for payment of servicesShares issue for payment of services(545)(576)Shares issue for payment of services— — (545)(576)
Corporate noncash itemsCorporate noncash items52 (265)Corporate noncash items627 (203)678 (468)
Unallocated corporate costs— — 
EliminationsEliminations— (1,511)Eliminations— (32)— (97)
Consolidated net loss from continuing operations before income taxesConsolidated net loss from continuing operations before income taxes$(22,789)$(23,956)Consolidated net loss from continuing operations before income taxes$(20,384)$(26,148)$(43,173)$(50,104)
Revenues by reportable segment were as follows:
Three Months Ended March 31, 2023Three Months Ended June 30, 2023
BiopharmaceuticalsExemplarTotalBiopharmaceuticalsExemplarTotal
Revenues from external customersRevenues from external customers$— $1,851 $1,851 Revenues from external customers$— $1,767 $1,767 
Intersegment revenuesIntersegment revenues— — — Intersegment revenues— — — 
Total segment revenuesTotal segment revenues$— $1,851 $1,851 Total segment revenues$— $1,767 $1,767 
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Three Months Ended March 31, 2022Three Months Ended June 30, 2022
BiopharmaceuticalsExemplarTotalBiopharmaceuticalsExemplarTotal
Revenues from external customersRevenues from external customers$84 $5,429 $5,513 Revenues from external customers$70 $2,841 $2,911 
Intersegment revenuesIntersegment revenues1,446 — 1,446 Intersegment revenues— — — 
Total segment revenuesTotal segment revenues$1,530 $5,429 $6,959 Total segment revenues$70 $2,841 $2,911 

Six Months Ended June 30, 2023
BiopharmaceuticalsExemplarTotal
Revenues from external customers$— $3,618 $3,618 
Intersegment revenues— — — 
Total segment revenues$— $3,618 $3,618 
Six Months Ended June 30, 2022
BiopharmaceuticalsExemplarTotal
Revenues from external customers$154 $8,270 $8,424 
Intersegment revenues— — — 
Total segment revenues$154 $8,270 $8,424 
The table below reconciles total segment revenues from reportable segments to total consolidated revenues:
Three Months Ended 
 March 31,
Three Months Ended 
 June 30,
Six Months Ended 
 June 30,
202320222023202220232022
Total segment revenues from reportable segmentsTotal segment revenues from reportable segments$1,851 $6,959 Total segment revenues from reportable segments$1,767 $2,911 $3,618 $8,424 
Elimination of intersegment revenuesElimination of intersegment revenues— (1,446)Elimination of intersegment revenues— — — — 
Total consolidated revenuesTotal consolidated revenues$1,851 $5,513 Total consolidated revenues$1,767 $2,911 $3,618 $8,424 

For the three months ended March 31,June 30, 2023 and 2022, 35.0%73.3% and 75.5%64.9%, respectively, of total consolidated revenue was attributable to one customerfour customers in 2023 and two customers in 2022, in the Exemplar segment. For the six months ended June 30, 2023 and 2022, 78.0% and 67.9%, respectively, of total consolidated revenue was attributable to 4 customers in 2023 and 1 in 2022, in the Exemplar segment.
As of March 31,June 30, 2023 and December 31, 2022, the Company had $2,368$2,216 and $2,591, respectively, of long-lived assets in foreign countries. The Company recognized revenues derived in foreign countries totaling $0 and $84$70 for the three months ended March 31,June 30, 2023 and 2022, respectively, and $0 and $154 for the six months ended June 30, 2023 and 2022, respectively.
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Item 2. Management's Discussion and Analysis of Financial Condition and Results of Operations
The following "Management's Discussion and Analysis of Financial Condition and Results of Operations" should be read in conjunction with the unaudited financial information and the notes thereto included in this Quarterly Report on Form 10-Q, or Quarterly Report, and our Annual Report on Form 10-K for the year ended December 31, 2022, or Annual Report.
The following discussion contains forward-looking statements that reflect our plans, estimates, expectations, and beliefs. Our actual results could differ materially from those discussed in the forward-looking statements and you are cautioned not to place undue reliance on forward-looking statements. Factors that could cause or contribute to these differences include those discussed below and elsewhere in this Quarterly Report, particularly in "Special Note Regarding Forward-Looking Statements" and "Risk Factors." The forward-looking statements included in this Quarterly Report are made only as of the date hereof.
Overview

We are a dedicated discovery and clinical-stage biopharmaceutical company advancing the next generation of gene and cell therapies with the overall goal of improving outcomes for patients with significant unmet medical needs. We are leveraging our proprietary technology platforms to develop product candidates designed to target urgent and intractable diseases in our core therapeutic areas of immuno-oncology, autoimmune disorders, and infectious diseases. We have developed an extensive pipeline of therapies across multiple indications within these core focus areas.

We believe that our array of technology platforms uniquely positions us among other biotechnology companies to advance precision medicine. Precision medicine is the practice of therapeutic product development that takes into account specific genetic variations within populations impacted by a disease to design targeted therapies to improve outcomes for a disease or patient population. Our proprietary and complementary technology platforms provide a strong foundation to realize the core promise of precision medicine by supporting our efforts to construct powerful gene programs to drive efficacy, deliver these programs through viral, non-viral, and microbe-based approaches to drivemaintain lower costs, and control gene expression to driveensure safety. Our therapeutic platforms, including UltraCAR-T, AdenoVerse immunotherapy, and ActoBiotics, are designed to allow us to precisely control the level and physiological location of gene expression and modify biological molecules in order to control the function and output of living cells to treat underlying disease conditions.

We are actively advancing our lead clinical programs, including: PRGN-3005, PRGN-3006 and PRGN-3007, which are built on our UltraCAR-T platform; and PRGN-2009 and PRGN-2012, which are based on our AdenoVerse immunotherapy platform. In addition, we have completed a Phase 1b/2a study of AG019, which is built on our ActoBiotics platform. We also have a robust pipeline of preclinical programs that we are pursuing in order to drive long-term value creation.

We have developed a proprietary electroporation device, UltraPorator, designed to further streamline and ensure the rapid and cost-effective manufacturing of UltraCAR-T therapies. UltraPorator has received U.S. Food and Drug Administration, or FDA, clearance for manufacturing UltraCAR-T cells in clinical trials, and we have been dosing patients with UltraCAR-T cells manufactured with UltraPorator in our UltraCAR-T clinical trials.

We exercise discipline in our portfolio management by systematically evaluating data from our preclinical programs in order to make rapid "go" and "no go" decisions. Through this process, we believe we can more effectively allocate resources to programs that we believe show the most promise and advance such programs to clinical trials.
Our Biopharmaceuticals reportable segment is primarily comprised of the Company's legal entities of Precigen and ActoBio, as well as royalty interests in therapeutics and therapeutic platforms from companies not controlled by us. In addition to human therapeutics,Our Exemplar reportable segment is comprised of Exemplar Genetics LLC, doing business as Precigen Exemplar, or Exemplar, is our wholly owned subsidiary which is focused on developing research models and services for healthcare research applications.
Biopharmaceuticals
Precigen
We are developing therapies built on our UltraCAR-T therapeutics platform and our "off-the-shelf" AdenoVerse immunotherapy platform. Through our UltraCAR-T therapeutics platform, we are able to precision-engineer UltraCAR-T cells to produce a homogeneous cell product that simultaneously expresses antigen-specific chimeric antigen receptor, or CAR, kill switch, and our proprietary membrane-bound interleukin-15, or mbIL15, genes in any genetically modified UltraCAR-T cell. Our decentralized and rapid proprietary manufacturing process allows us to manufacture UltraCAR-T cells overnight at a medical center's current good manufacturing practices facility, or cGMP, and reinfuse the patient the following day after gene transfer. This process improves upon current approaches to CAR-T manufacturing, which require extensive ex vivo expansion following viral vector transduction to achieve clinically relevant cell numbers that we believe can result in the exhaustion of
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CAR-T cells prior to their administration, limiting their potential for persistence in patients. We have developed a proprietary electroporation device, UltraPorator, designed to further streamline and ensure the rapid and cost-effective manufacturing of UltraCAR-T therapies. The UltraPorator system includes proprietary hardware and software solutions and potentially represents major advancements over current electroporation devices by significantly reducing the processing time and contamination risk. UltraPorator is intended to be a viable scale-up and commercialization solution for decentralized UltraCAR-T manufacturing. Our AdenoVerse immunotherapy platform utilizes a library of proprietary adenovectors for the efficient gene delivery of therapeutic effectors, immunomodulators, and vaccine antigens. We have established proprietary manufacturing cell lines and production methodologies from our AdenoVerse immunotherapy platform, which we believe are easily scalable for commercial supply. We believe that our proprietary gorilla adenovectors, part of the AdenoVerse technology, have superior performance characteristics as compared to current competition, including standard human adenovirus serotype 5, rare human adenovirus types and other non-human primate adenovirus types.

TheOur most advanced programs are as follows:

PRGN-2012 is a first-in-class, investigational "off-the-shelf" AdenoVerse immunotherapy for the treatment of recurrent respiratory papillomatosis, or RRP. PRGN-2012 is an innovative therapeutic vaccine with optimized antigen design that uses our gorilla adenovector technology, part of our proprietary AdenoVerse platform, to elicit immune responses directed against cells infected with HPV type 6 and HPV type 11. PRGN-2012 is in a Phase 1/2 clinical trial for adult patients with RRP. This clinical trial is being conducted in collaboration with the Center for Cancer Research at the NCI pursuant to a CRADA. We have completed the Phase 1 clinical trial. The Phase 2 clinical trial is ongoing. PRGN-2012 has been granted Breakthrough Therapy Designation for the treatment of RRP by the FDA. Previously, PRGN-2012was granted Orphan Drug designation by the FDA.

PRGN-2009 is a first-in-class, "off-the-shelf" investigational immunotherapy designed to activate the immune system to recognize and target human papillomavirus-positive, or HPV+, solid tumors. PRGN-2009 leverages our UltraVector and AdenoVerse platforms to optimize HPV type 16 and HPV type 18, antigen designed for delivery via a proprietary gorilla adenovector with a large genetic payload capacity and the ability for repeat administrations. We have completed a Phase 1 clinical trial of PRGN-2009 as a monotherapy or in combination with bintrafusp alfa, or M7824, an investigational bifunctional fusion protein, for patients with HPV-associated cancers in collaboration with the National Cancer Institute, or NCI, pursuant to a cooperative research and development arrangement, or CRADA. A Phase 2 clinical trial of PRGN-2009 in newly diagnosed oropharyngeal squamous cell carcinoma patients is ongoing in collaboration with the NCI pursuant to a CRADA. In addition, we have received FDA clearance of an IND to initiate a Phase 2 clinical trial of PRGN-2009 in combination with pembrolizumab to treat patients with recurrent or metastatic cervical cancer.

PRGN-3006 is a first-in-class, investigational autologous CAR-T therapy that utilizes our UltraCAR-T platform to express a CAR to target CD33 (Siglec-3), mbIL15 and akill switch gene. PRGN-3006 is currently being evaluated in a Phase 1/1b clinical trial for the treatment of relapsed or refractory, or r/r, acute myeloid leukemia, or AML, and high-risk myelodysplastic syndromes, or MDS. PRGN-3006 has been granted Fast Track designation in patients with r/r AML by the FDA. Previously PRGN-3006 was granted Orphan Drug Designation in patients with AML by the FDA. We have completed the Phase 1 dose escalation trial. The Phase 1b dose expansion trial is ongoing where PRGN-3006 is being evaluated following lymphodepletion.

PRGN-3005 is a first-in-class, investigational autologous CAR-T therapy that utilizes our UltraCAR-T platform to simultaneously express a CAR targeting the unshed portion of the Mucin 16 antigen, mbIL15, and kill switch genes. PRGN-3005 is currently being evaluated in a Phase 1/1b clinical trial for the treatment of advanced, recurrent platinum-resistant ovarian , fallopian tube, or primary peritoneal cancer. We have completed enrollment in the Phase 1 dose escalation cohorts of the intraperitoneal (IP) and intravenous (IV) arms without lymphodepletion as well as in the lymphodepletion cohort in the IV arm and initiated Phase 1b expansion clinical trial.

PRGN-3006 is a first-in-class, investigational autologous CAR-T therapy that utilizes our UltraCAR-T platform to express a CAR to target CD33 (Siglec-3), mbIL15 and akill switch gene. PRGN-3006 is currently being evaluated in a Phase 1/1b clinical trial for the treatment of relapsed or refractory, or r/r, acute myeloid leukemia, or AML, high-risk myelodysplastic syndromes, or MDS, and chronic myelomonocytic leukemia, or CMML. PRGN-3006 has been granted Fast Track designation in patients with r/r AML by the FDA. Previously PRGN-3006 was granted Orphan Drug Designation in patients with AML by the FDA. We have completed the Phase 1 dose escalation study. Phase 1b dose expansion trial is ongoing where PRGN-3006 is being evaluated following lymphodepletion.

PRGN-3007 is a first-in-class, investigational autologous CAR-T therapy that utilizes the next generation UltraCAR-T platform to express a CAR to targetwhich targets ROR1, mbIL15, a kill switch, and a novel mechanism for the intrinsic blockade of the programmed death 1, or PD-1, gene expression. PRGN-3007 is being evaluated in a Phase 1/1b clinical trial for patients with advanced receptor tyrosine kinase-like orphan receptor 1-positive, or ROR1+, hematological (Arm 1) and solid tumors (Arm 2). The target patient population for Arm 1 includes relapsed or refractory CLL, relapsed or refractory MCL, relapsed or refractory B-ALL, and relapsed or refractory DLBCL. The target patient population for Arm 2 includes locally advanced unresectable or metastatic histologically confirmed TNBC Arm 1 and Arm 2 will enroll in parallel. The study is enrollingdesigned to enroll in two parts: an initial 3+3 dose escalation in each arm followed by a dose expansion at the maximum tolerated dose.

PRGN-2009 is a first-in-class, "off-the-shelf" investigational immunotherapy designed to activate the immune system to recognize and target human papillomavirus-positive, or HPV+, solid tumors. PRGN-2009 leverages our UltraVector and AdenoVerse platforms to optimize HPV type 16 and HPV type 18, antigen design for delivery via a proprietary gorilla adenovector with a large genetic payload capacity and the ability for repeat administrations. PRGN-2009 is in a Phase 1/2 clinical trial as a monotherapy or in combination with bintrafusp alfa, or M7824, an investigational bifunctional fusion protein, for patients with HPV-associated cancers in collaboration with the National Cancer Institute, or NCI, pursuant to a cooperative research and development arrangement, or CRADA.

PRGN-2012 is a first-in-class, investigational "off-the-shelf" AdenoVerse immunotherapy for the treatment of recurrent respiratory papillomatosis, or RRP. PRGN-2012 is an innovative therapeutic vaccine with optimized antigen design that uses our gorilla adenovector technology, part of our proprietary AdenoVerse platform, to elicit immune responses directed against cells infected with HPV type 6 and HPV type 11. PRGN-2012 is in a Phase 1/2 clinical trial for adult patients with RRP. PRGN-2012 is being developed in collaboration with the Center for Cancer Research at the NCI pursuant to a CRADA. We have completed the The Phase 1 clinical trial. Phase 2 clinicaldose escalation trial is ongoing. PRGN-2012has been granted Orphan Drug designation for treatment of RRP by the FDA.

In addition to our clinical programs, we have a robust pipeline of preclinical programs in order to drive long-term value creation. Our pipeline includes product candidates based on UltraCAR-T and "off-the-shelf" AdenoVerse immunotherapy therapeutic platforms. We expect to continue development of a number of potential product candidates in our preclinical pipeline to identify product candidates for evaluation in clinical trials.
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Precigen ActoBio, Inc.

ActoBio is pioneering a proprietary class of microbe-based biopharmaceuticals, referred to as ActoBiotics, that enable expression and local delivery of disease-modifying therapeutics. Our ActoBiotics platform is a unique delivery platform precisely tailored for specific disease modification with the potential for superior efficacy and safety. ActoBiotics combine the advantages of highly selective protein-based therapeutic agents with local delivery by the well-characterized, and food-grade bacterium Lactococcus lactis, or L. lactis. ActoBiotics can be delivered orally in a capsule, through an oral rinse, or in a topical solution. We believe ActoBiotics have the potential to provide superior safety and efficacy viathrough the sustained release of appropriate quantities of select therapeutic agents as compared to injectable biologics, while reducing the side effects commonly attributed to systemic delivery and corresponding peaks in concentration. ActoBiotics work via genetically modified bacteria thatwhich deliver proteins and peptides at mucosal sites, rather than the insertion of one or more genes into a human cell by means of a virus or other delivery mechanism. By foregoing this insertion, ActoBiotics allowenable "gene therapy" without the need for cell transformation.

ActoBio's most advanced internal pipeline candidate, AG019, is a first-in-class disease modifying antigen-specific, investigational immunotherapy for the prevention, delay, or reversal of type 1 diabetes mellitus, or T1D. AG019 is an easy-to-take capsule formulation of ActoBiotics engineered to deliver the autoantigen human proinsulin, or hPINS, and the tolerance-enhancing cytokine human interleukin-10 to the mucosal lining of gastro-intestinal tissues in patients with T1D. We have completed a Phase 1b/2a clinical trial of AG019 for the treatment of early-onset T1D. The Phase 1b portion of the study evaluated the safety and tolerability of AG019 monotherapy administered both as a single dose and as repeated daily doses in adult and adolescent patients. The Phase 2a double-blind portion of the study investigated the safety and tolerability of AG019 in combination with teplizumab, or PRV-031. The primary endpoint of assessing safety and tolerability in both the Phase 1b AG019 monotherapy and the Phase 2a AG019 combination therapy has been met. AG019 was well-tolerated when administered to adults and adolescents either as monotherapy or in combination with teplizumab. A single 8-week treatment cycle of oral AG019 as a monotherapy and in combination with teplizumab showed stabilization or increase of C-peptide levels during the first 6 months post treatment initiation in recent-onset T1D.
Third Party Licenses

We previously entered into a collaboration with Castle Creek Biosciences, Inc., or Castle Creek, to advance certain product candidates. Pursuant to the collaboration, we licensed our technology platforms to Castle Creek for use in certain specified fields, and in exchange, we received and were entitled to certain access fees, milestone payments, royalties, and sublicensing fees related to the development and commercialization of product candidates. In March 2020, we and Castle Creek terminated the original collaboration agreement by mutual agreement, with the parties agreeing that certain product candidates would be treated as "Retained Products" under the terms of the original agreement. Castle Creek retains a license to continue to develop and commercialize the Retained Products within the field of use for so long as Castle Creek continues to pursue such development and commercialization, andcommercialization; we are also entitled to certain royalties with respect to the Retained Products. One such Retained Product is D-Fi (debcoemagene autoficel), formerly designated FCX-007, for the treatment of recessive dystrophic epidermolysis bullosa, or RDEB.
Precigen Exemplar

Exemplar is committed to enabling the study of life-threatening human diseases through the development of MiniSwine Yucatan miniature pig research models and services, as well asand by enabling the production of cells and organs in its genetically engineered swine for regenerative medicine applications. Historically, researchers have lacked animal models that faithfully represent human diseases. As a result, a sizeable barrier has blocked progress in the discovery of human disease mechanisms; novel diagnostics, procedures, devices, prevention strategies and therapeutics; andas well as the ability to predict in humans the efficacy of those next-generation procedures, devices, and therapeutics. Exemplar's MiniSwine models are genetically engineered to exhibit a wide variety of human disease states, which provides a more accurate platform to test the efficacy of new medications and devices.
Discontinued Operations
In August 2022, Precigen completed the sale of 100% of the issued and outstanding membership interests in its wholly-owned subsidiary, Trans Ova Genetics, L.C. (“Trans Ova”), a provider of reproductive technologies, including services and products sold to cattle breeders and other producers.
See also "Notes to the Condensed Consolidated Financial Statements (Unaudited) - Note 3" appearing elsewhere in this Quarterly Report for additional discussion of our discontinued operations.
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Segments
As of March 31,June 30, 2023, our reportable segments were (i) Biopharmaceuticals and (ii) Exemplar. These identified reportable segments met the quantitative thresholds to be reported separately for the threesix months ended March 31,June 30, 2023.
Prior to January 1, 2023, corporate expenses, were not allocated to the segments and were managed at a consolidated level. Corporate expenses, include costs associated with general and administrative functions, including the Company's finance, accounting, legal, human resources, information technology, corporate communication, and investor relations functions. Corporate expenses exclude interest expense, depreciation and amortization, gain or loss on disposals of assets, stock-based compensation expense, loss on settlement agreement, and equity in net loss of affiliates and include unrealized and realized gains and losses on the Company's securities portfolio as well as dividend income. Beginning in the first quarter of 2023, we began allocating certain corporate expenses to one of the reporting units within the Biopharmaceuticals reportable segment. As presented in Note 15 to the Condensed Consolidated Financial Statements (Unaudited) appearing elsewhere in this Quarterly Report, the prior year period has been reclassified to conform to the current period’s presentation.
Financial overview
We have incurred significant losses since our inception. We anticipate that we may continue to incur significant losses for the foreseeable future, and we may never achieve or maintain profitability. Our historical collaboration and licensing revenues were generated under a business model from which we have gradually transitioned, and we do not expect to expend significant resources servicing our historical collaborations in the future. We may enter into strategic transactions for individual platforms or programs in the future from which we may generate new collaboration and licensing revenues. We continue to generate product and service revenues through our Exemplar subsidiary, and in the threesix months ended March 31,June 30, 2023, it produced positive Segment Adjusted EBITDA. Products currently in our clinical pipeline will require regulatory approval and/or commercial scale-up before they may commence significant product sales and operating profits.
As we continue our efforts to focus our business and generate additional capital, we may be willing to enter into transactions involving one or more of our operating segments and reporting units for which we have goodwill and intangible assets. These efforts could result in us identifying impairment indicators or recording impairment charges in future periods. In addition, market changes and changes in judgements, assumptions, and estimates that we have made in assessing the fair value of goodwill could cause us to consider some portion or all of certain assets to become impaired.
Sources of revenue

Although we have generated revenue in the past from collaboration agreements, our primary current revenues arise from Exemplar, which generates product and service revenues through the development and sale of genetically engineered miniature swine models. We recognize revenue when control of the promised product or service is transferred to the customer.
As we have shifted our focus to our healthcare business, we have and may continue to mutually terminate historical collaboration agreements or repurchase rights to the exclusive fields from collaborators, relieving us of any further performance obligations under the agreement. Upon such circumstances or when we determine no further performance obligations are required of us under an agreement, we may recognize any remaining deferred revenue as either collaboration revenue or as a reduction of operating expense, depending on the circumstances. See "Notes to the Consolidated Financial Statements (Unaudited) - Note 4" appearing elsewhere in this Quarterly Report for a discussion of changes to our significant collaborations.

In future periods, in connection with our focus on healthcare, our revenues will primarily depend on our ability to advance and create our own programs and the extent to which we bring products enabled by our technologies to market. Other than for collaboration revenues recognized upon cancellation or modification of an existing collaboration or for revenues generated pursuant to future strategic transactions for any of our existing platforms or programs, we expect our collaboration revenues will continue to decrease in the near term, although if any new collaboration agreements or strategic transactions are entered into, revenue could be positively impacted . Our revenues will also depend upon our ability to maintain or improve the volume and pricing of Exemplar's current product and service offerings and to develop and scale up production of new offerings from the various technologies of our subsidiaries.Exemplar. As we focus on our healthcare business, we anticipate that our expenses will increase substantially if, and as, we continue to advance the preclinical and clinical development of our existing product candidates and our research programs. We expect a significant period of time could pass before commercialization of our various product candidates or before the achievement of contractual milestones and the realization of royalties on product candidates commercialized under our collaborations. Accordingly, there can be no assurance as to the timing, magnitude, and predictability of revenues, if any, to which we might be entitled.
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Cost of products and services

Cost of products and services, all which are related to our Exemplar reporting segment, includes primarily labor and related costs, drugs and supplies, feed used in production, and facility charges, including rent and depreciation. Fluctuations in the price of livestock and feed have not had a significant impact on our operating margins and no derivative financial instruments are used to mitigate the price risk.
Research and development expenses
We recognize research and development expenses as they are incurred. Our research and development expenses consist primarily of:
salaries and benefits, including stock-based compensation expense, for personnel in research and development functions;
fees paid to consultants and contract research organizations who perform research on our behalf and under our direction;
costs related to laboratory supplies used in our research and development efforts and acquiring, developing, and manufacturing preclinical study and clinical trial materials;
costs related to certain in-licensed technology rights or in-process research and development;
amortization of patents and related technologies acquired in mergers and acquisitions; and
facility-related expenses, which include direct depreciation costs and unallocated expenses for rent and maintenance of facilities and other operating costs.
Our research and development expenses are generally incurred by our reportable segments and primarily relate to either costs incurred to expand or otherwise improve our technologies or the costs incurred to develop our own products and services. Our Biopharmaceuticals segment is progressing preclinical and clinical programs that target urgent and intractable diseases in our core therapeutic areas of immuno-oncology, autoimmune disorders, and infectious diseases, including PRGN-3005, PRGN-3006, PRGN-3007, PRGN-2009, and PRGN-2012 and AG019. Our Exemplar segment's research and development activities relate to new and improved pig research models. The following table summarizes our research and development expenses incurred by reportable segment and reconciles those expenses to research and development expenses on the condensed consolidated statements of operations for the three and six months ended March 31,June 30, 2023 and 2022.
Three Months Ended 
 March 31,
Three Months Ended 
 June 30,
Six Months Ended 
 June 30,
20232022 2023202220232022
BiopharmaceuticalsBiopharmaceuticals$12,097 $11,718 Biopharmaceuticals$11,797 $11,879 $23,894 $23,597 
ExemplarExemplar66 83 Exemplar77 75 143 158 
Total consolidated research and development expensesTotal consolidated research and development expenses$12,163 $11,801 Total consolidated research and development expenses$11,874 $11,954 $24,037 $23,755 
The amount of research and development expenses may be impacted by, among other things, the number and nature of our own proprietary programs, and the number and size of programs we may support on behalf of collaboration agreements. We expect that our research and development expenses will increase as we continue to develop our own proprietary programs, including progression of these programs into preclinical and clinical stages. We believe these increases will likely include increased costs paid to consultants and contract research organizations and increased costs related to laboratory supplies.
Research and development expenses may also increase as a result of in-licensing of technologies or ongoing research and development operations that we might assume through mergers and acquisitions.
Selling, general and administrative expenses
Selling, general and administrative, or SG&A, expenses consist primarily of salaries and related costs, including stock-based compensation expense, for employees in executive, operational, finance, information technology, legal, and corporate
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communications functions. Other significant SG&A expenses include rent and utilities, insurance, accounting, and legal services (including the cost of settling any claims and lawsuits), and expenses associated with obtaining and maintaining our intellectual property.
SG&A expenses may fluctuate in the future depending on the scaling of our corporate functions required to support our corporate initiatives and the outcomes of legal claims and assessments against us.
Other income (expense), net

Other income consists of interest earned on our cash and cash equivalents and short-term and long-term investments and may
fluctuate based on amounts invested and current interest rates.

Other expense consists primarily of interest on our Convertible Notes, which decreased in 20222023 due redemption of a portionto retirements of our Convertible Notes. See "Notes to the Condensed Consolidated Financial Statements (Unaudited) - Note 9" appearing elsewhere in this Quarterly Report for further discussion.
Equity in net loss of affiliates
Equity in net income or loss of affiliates is our pro-rata share of our equity method investments' operating results, adjusted for accretion of basis difference. We account for investments in our JVs using the equity method of accounting since we have the ability to exercise significant influence, but not control, over the operating activities of these entities.
Segment performance
We use Segment Adjusted EBITDA as our primary measure of segment performance. We define Segment Adjusted EBITDA as net income (loss) before (i) interest expense, (ii) income tax expense or benefit, (iii) depreciation and amortization, (iv) stock-based compensation expense, (v) loss on settlement agreements where noncash consideration is paid, (vi) adjustments for accrued bonuses paid in equity awards, (vii) gain or loss on disposals of assets, (viii) loss on impairment of goodwill and other noncurrent assets, (ix) equity in net loss of affiliates, and (x) recognition of previously deferred revenue associated with upfront and milestone payments as well as cash outflows from capital expenditures and investments in affiliates, but includes proceeds from the sale of assets in the period sold. See "Notes to the Condensed Consolidated Financial Statements (Unaudited) - Note 15" appearing elsewhere in this Quarterly Report for further discussion of Segment Adjusted EBITDA.
Results of operations
Comparison of the three months ended March 31,June 30, 2023 and the three months ended March 31,June 30, 2022
The following table summarizes our results of operations for the three months ended March 31,June 30, 2023 and 2022, together with the changes in those items in dollars and as a percentage:
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Three Months Ended 
 March 31,
Dollar
Change
Percent
Change
Three Months Ended 
 June 30,
Dollar
Change
Percent
Change
20232022 20232022
(In thousands)  (In thousands) 
RevenuesRevenuesRevenues
Product revenuesProduct revenues$324 492 $(168)(34.1)%Product revenues$324 621 $(297)(47.8)%
Service revenuesService revenues1,527 4,933 (3,406)(69.0)%Service revenues1,438 2,213 (775)(35.0)%
Other revenuesOther revenues— 88 (88)(100.0)%Other revenues77 (72)(93.5)%
Total revenuesTotal revenues1,851 5,513 (3,662)(66.4)%Total revenues1,767 2,911 (1,144)(39.3)%
Operating expensesOperating expensesOperating expenses
Cost of product and servicesCost of product and services1,527 1,694 (167)(9.9)%Cost of product and services1,697 1,811 (114)(6.3)%
Research and developmentResearch and development12,163 11,801 362 3.1 %Research and development11,874 11,954 (80)(0.7)%
Selling, general and administrativeSelling, general and administrative11,639 13,689 (2,050)(15.0)%Selling, general and administrative9,316 12,670 (3,354)(26.5)%
Impairment of goodwill— 482 (482)(100.0)%
Impairment of other noncurrent assetsImpairment of other noncurrent assets— 638 (638)(100.0)%
Total operating expensesTotal operating expenses25,329 27,666 (2,337)(8.4)%Total operating expenses22,887 27,073 (4,186)(15.5)%
Operating lossOperating loss(23,478)(22,153)(1,325)6.0 %Operating loss(21,120)(24,162)3,042 (12.6)%
Total other income (expense), netTotal other income (expense), net689 (1,802)2,491 138.2 %Total other income (expense), net736 (1,986)2,722 137.1 %
Equity in net loss of affiliates— (1)(100.0)%
Loss from continuing operations before income taxesLoss from continuing operations before income taxes(22,789)(23,956)1,167 (4.9)%Loss from continuing operations before income taxes(20,384)(26,148)5,764 (22.0)%
Income tax benefitIncome tax benefit55 58 (3)(5.2)%Income tax benefit65 89 (24)(27.0)%
Loss from continuing operationsLoss from continuing operations(22,734)(23,898)1,164 (4.9)%Loss from continuing operations(20,319)(26,059)5,740 (22.0)%
Income from discontinued operations, net of income taxes (1)Income from discontinued operations, net of income taxes (1)— 4,647 (4,647)(100.0)%Income from discontinued operations, net of income taxes (1)— 8,424 (8,424)(100.0)%
Net lossNet loss$(22,734)$(19,251)$(3,483)18.1 %Net loss$(20,319)$(17,635)$(2,684)15.2 %
(1)See "Notes to the Condensed Consolidated Financial Statements (Unaudited) - Note 3" appearing elsewhere in this Quarterly Report.

Revenues and gross margin
Revenues decreased $3.7$1.1 million, or 66%39%, from the three months ended March 31,June 30, 2022. This decrease related to the recognition of revenue in the first quarter of 2022 related to agreements for which revenue was previously deferred that did not occur in the first quarter of 2023 of $1.0 million, as well as declinesreductions in services performed resulting from a lower demand from existing customers at Exemplar. Gross margin on product and serviceservices declined in the current period primarily as a result of the decreased revenues, and an increasewith a smaller impact due to increases in salaries, benefits, and other personnel costs at Exemplar.

Research and development expenses
Research and development expenses increased $0.4decreased $0.1 million, or 3%1%, compared to the three months ended March 31,June 30, 2022. This increasedecrease was primarily driven by a continued prioritization of clinical product candidates.less expense incurred related to preclinical research programs for the comparable period.

Selling, general and administrative expenses
SG&A expenses decreased $2.1$3.4 million, or 15%27%, compared to the three months ended March 31,June 30, 2022. This decrease was primarily driven by a reduction in professional fees of $2.0$2.2 million, due to decreased legal fees associated with certain litigation matters.matters, as well as a $1.1 million reduction in salaries, benefits, and other personnel costs due to reduced head count.
Total other income (expense), net
Total other income, net, increased $2.5$2.7 million compared to the three months ended March 31,June 30, 2022. This is primarily due to reduced interest expense associated with our Convertible Notes issued July 2018 as they have been mostlywere retired in the second quarter of 2023, and increased interest income due to higher interest rates on our investments.

Segment performance
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Segment performance
The following table summarizes Segment Adjusted EBITDA, which is our primary measure of segment performance, for the three months ended March 31,June 30, 2023 and 2022, for each of our reportable segments as well as unallocated corporate costs.segments.
Three Months Ended 
 March 31,
Dollar
Change
Percent
Change
Three Months Ended 
 June 30,
Dollar
Change
Percent
Change
20232022 20232022
(In thousands)  (In thousands) 
Segment Adjusted EBITDA:Segment Adjusted EBITDA:Segment Adjusted EBITDA:
BiopharmaceuticalsBiopharmaceuticals$(20,764)$(20,839)$75 0.4 %Biopharmaceuticals$(17,880)$(19,997)$2,117 10.6 %
ExemplarExemplar121 3,558 (3,437)(96.6)%Exemplar(83)795 (878)(110.4)%
For a reconciliation of Segment Adjusted EBITDA to net loss from continuing operations before income taxes, see "Notes to the Condensed Consolidated Financial Statements (Unaudited) - Note 15" appearing elsewhere in this Quarterly Report.
The following table summarizes revenues from external customers for the three months ended March 31,June 30, 2023 and 2022, for each of our reportable segments.
Three Months Ended 
 March 31,
Dollar
Change
Percent
Change
Three Months Ended 
 June 30,
Dollar
Change
Percent
Change
20232022 20232022
(In thousands)  (In thousands) 
BiopharmaceuticalsBiopharmaceuticals$— $84 $(84)(100.0)%Biopharmaceuticals$— $70 $(70)(100.0)%
ExemplarExemplar1,851 5,429 (3,578)(65.9)%Exemplar1,767 2,841 (1,074)(37.8)%
Biopharmaceuticals
Segment Adjusted EBITDA increased primarily due to our reduction in Selling, general and administrative expenses within the reportable segment.
Exemplar
Revenues for Exemplar decreased due to a decrease in services performed resulting from a lower demand from existing customers. The decline in Segment Adjusted EBITDA was primarily due to the decreased revenues.
Comparison of the six months ended June 30, 2023 and the six months ended June 30, 2022
The following table summarizes our results of operations for the six months ended June 30, 2023 and 2022, together with the changes in those items in dollars and as we hada percentage:
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 Six Months Ended 
 June 30,
Dollar
Change
Percent
Change
 20232022
 (In thousands) 
Revenues
Product revenues$648 1,113 $(465)(41.8)%
Service revenues2,965 7,146 (4,181)(58.5)%
Other revenues165 (160)(97.0)%
Total revenues3,618 8,424 (4,806)(57.1)%
Operating expenses
Cost of product and services3,224 3,505 (281)(8.0)%
Research and development24,037 23,755 282 1.2 %
Selling, general and administrative20,954 26,359 (5,405)(20.5)%
Impairment of goodwill— 482 (482)(100.0)%
Impairment of other noncurrent assets— 638 (638)(100.0)%
Total operating expenses48,215 54,739 (6,524)(11.9)%
Operating loss(44,597)(46,315)1,718 (3.7)%
Total other income (expense), net1,424 (3,788)5,212 137.6 %
Equity in net loss of affiliates— (1)(100.0)%
Loss from continuing operations before income taxes(43,173)(50,104)6,931 (13.8)%
Income tax benefit120 147 (27)(18.4)%
Loss from continuing operations(43,053)(49,957)6,904 (13.8)%
Income from discontinued operations, net of income taxes (1)— 13,071 (13,071)(100.0)%
Net loss$(43,053)$(36,886)$(6,167)16.7 %
(1)See "Notes to the Condensed Consolidated Financial Statements (Unaudited) - Note 3" appearing elsewhere in this Quarterly Report.

Revenues and gross margin

Revenues decreased $4.8 million, or 57.1%, from the six months ended June 30, 2022. This decrease primarily related to reductions in services performed at Exemplar as well as the recognition of revenue in the first quarter of 2022 related to agreements for which revenue was previously deferred that did not occur in 2023 of $1.0 million at Exemplar. Gross margin on product and service declined in the current period primarily as a result of the decreased revenues, with a smaller impact due to increases in salaries, benefits, and other personnel costs at Exemplar.

Research and development expenses
Research and development expenses increased costs$0.3 million, or 1.2%, compared to the six months ended June 30, 2022. This increase was primarily driven by a continued prioritization of clinical product candidates.

Selling, general and administrative expenses
SG&A expenses decreased $5.4 million, or 20.5%, compared to the six months ended June 30, 2022. This decrease was primarily driven by a reduction in professional fees of $4.2 million, due to decreased legal fees associated with certain litigation matters, as well as a $1.1 million reduction in salaries, benefits, and other personnel costs due to reduced head count.

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Total other income (expense), net
Total other income, net, increased $5.2 million compared to the advancementsix months ended June 30, 2022. This is primarily due to reduced interest expense associated with our Convertible Notes issued July 2018 as they were retired in the second quarter of 2023, and increased interest income due to higher interest rates on our investments.

Segment performance
The following table summarizes Segment Adjusted EBITDA, which is our primary measure of segment performance, for the six months ended June 30, 2023 and 2022.
 Six Months Ended 
 June 30,
Dollar
Change
Percent
Change
 20232022
 (In thousands) 
Segment Adjusted EBITDA:
Biopharmaceuticals$(39,277)$(40,874)$1,597 3.9 %
Exemplar38 4,353 (4,315)(99.1)%
For a reconciliation of Segment Adjusted EBITDA to net loss from continuing operations before income taxes, see "Notes to the Condensed Consolidated Financial Statements (Unaudited) - Note 15" appearing elsewhere in this Quarterly Report.
The following table summarizes revenues from external customers for the six months ended June 30, 2023 and 2022, for each of our clinicalreportable segments.
 Six Months Ended 
 June 30,
Dollar
Change
Percent
Change
 20232022
 (In thousands) 
Biopharmaceuticals$— $154 $(154)(100.0)%
Exemplar3,618 8,270 (4,652)(56.3)%
Biopharmaceuticals
Segment Adjusted EBITDA increased primarily as a result of a reduction of Selling, general and preclinical programs.administrative expenses partially offset by a higher adjustment related to bonuses settled in equity awards in 2023 and other segment EBITDA adjustments.
Exemplar
Revenues for Exemplar decreased due to a decrease in services performed resulting from a lower demand from existing customers. The decline in Segment Adjusted EBITDA was primarily due to the decreased revenues.
Liquidity and capital resources
Sources of liquidity
We have incurred losses from operations since our inception, and as of March 31,June 30, 2023, we had an accumulated deficit of $1.9 billion. From our inception through March 31,June 30, 2023, we have funded our operations principally with proceeds received from private and public equity and debt offerings, cash received from our collaborators, and through product and service sales made directly to customers. As of March 31,June 30, 2023, we had cash and cash equivalents of $9.7$16.5 million and short-term and long-term investments of $101.8$79.0 million. We also had restricted cash of $13.8 million at March 31, 2023. This cash is restricted for the permitted purposes related to our Convertible Notes, including the resolution of such notes. Cash in excess of immediate requirements is typically invested primarily in money market funds, certificate of deposits and U.S. government debt securities in order to maintain liquidity and preserve capital.
In January 2023, we closed a public offering of 43,962,640 shares of our common stock, resulting in net proceeds to us of $72.8 million, after deducting underwriting discounts, fees, and other underwritingoffering expenses.
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Cash flows
The following table sets forth the significant sources and uses of cash for the periods set forth below:
Three Months Ended 
 March 31,
Six Months Ended 
 June 30,
20232022 20232022
(In thousands) (In thousands)
Net cash provided by (used in):Net cash provided by (used in):Net cash provided by (used in):
Operating activitiesOperating activities$(18,388)$(18,783)Operating activities$(34,156)$(25,836)
Investing activitiesInvesting activities(50,408)16,568 Investing activities(26,905)33,141 
Financing activitiesFinancing activities44,174 (163)Financing activities29,589 (276)
Effect of exchange rate changes on cash, cash equivalents, and restricted cashEffect of exchange rate changes on cash, cash equivalents, and restricted cash(28)(230)Effect of exchange rate changes on cash, cash equivalents, and restricted cash(172)(471)
Net decrease in cash, cash equivalents, and restricted cashNet decrease in cash, cash equivalents, and restricted cash$(24,650)$(2,608)Net decrease in cash, cash equivalents, and restricted cash$(31,644)$6,558 
Cash flows from operating activities:
During the threesix months ended March 31,June 30, 2023, our net loss was $22.7$43.1 million, which includes the following significant noncash expenses totaling $5.3$9.2 million: (i) $3.1$5.3 million of stock-based compensation expense, (ii) $1.7$3.4 million of depreciation and amortization expense, and (iii) $0.5 million of shares issued as payment for services.
During the threesix months ended March 31,June 30, 2022, our net loss was $19.3$36.9 million, which includes the following significant noncash expenses totaling $8.3$14.7 million from both continuing and discontinued operations: (i) $3.6$5.9 million of stock-based compensation expense, (ii) $3.3$6.5 million of depreciation and amortization expense, (iii) $0.3$0.6 million accretion of debt discount and amortization of deferred financing costs, (iv) $0.6 million of shares issued as payment for services, and (vi) $0.5$1.1 million of goodwill impairment.asset impairments.
Our cash outflows from operations during the threesix months ended March 31,June 30, 2023 were $0.4$8.3 million lower than the threesix months ended March 31,June 30, 2022 primarily due the settlement in 2023 of previously accrued short-term incentive bonuses in stock awards whereas the majority of our 2021 short-term incentive bonuses were paid in to decreased cash in the first quarter of 2022.inflows provided by Trans Ova and Exemplar.
Cash flows from investing activities:
During the threesix months ended March 31,June 30, 2023, we purchased $50.3$26.7 million of investments, net of sales and maturities, primarily using the proceeds received from the underwritten public offering discussed below under cash flows from financing activities.
During the threesix months ended March 31,June 30, 2022, we received proceeds of $18.0$36.0 million related to the sale and maturity of investments.investments, partially offset by $3.3 million of purchases of property plant and equipment primarily in Trans Ova.
Cash flows from financing activities:
During the threesix months ended March 31,June 30, 2023, we received $73.5$72.8 million proceeds from the sale of our common stock in an underwritten public offering and retired $29.3$43.1 million of our Convertible Notes using restricted cash.
During the threesix months ended March 31,June 30, 2022, we made payments of long-term debt of $0.2$0.3 million .
Future capital requirements
We believe our existing liquid assets will enable us to fund our operating expenses and capital requirements for at least the next 12 months. Our future capital requirements will depend on many factors, including:
progress in our research and development programs, as well as the magnitude of these programs;
any delays or potential delays to our clinical trials as a result of the COVID-19 pandemic;
the timing of regulatory approval of our product candidates and those of our collaborations;
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the timing, receipt, and amount of any payments received in connection with strategic transactions;
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the timing, receipt, and amount of upfront, milestone, and other payments, if any, from present and future collaborators, if any;
the timing, receipt, and amount of sales and royalties, if any, from our product candidates;
the timing and capital requirements to scale up our various product candidates and service offerings and customer acceptance thereof;
our ability to maintain and establish additional collaborative arrangements and/or new strategic initiatives;
the resources, time, and cost required for the preparation, filing, prosecution, maintenance, and enforcement of our intellectual property portfolio;
strategic mergers and acquisitions, if any, including both the upfront acquisition cost as well as the cost to integrate, maintain, and expand the strategic target;
the costs associated with legal activities, including litigation, arising in the course of our business activities and our ability to prevail in any such legal disputes; and
the effects, duration, and severity of the ongoing COVID-19 pandemic and the actions we have taken or may take in response, any of which could significantly impact our business, operations, and financial results.
Until such time, if ever, as we can regularly generate positive operating cash flows, we plan to finance our cash needs through a combination of equity offerings, debt financings, government, or other third-party funding, strategic alliances, sales of assets, and licensing arrangements. We may not be able to raise sufficient additional funds on terms that are favorable to us, if at all. To the extent that we raise additional capital through the sale of equity or convertible debt securities, the ownership interests of our common shareholders will be diluted, and the terms of these securities may include liquidation or other preferences that adversely affect the rights of our common shareholders. Our current stock price may make it more difficult to pursue equity financings and lead to substantial dilution if the price of our common stock does not increase. Debt financing, if available, may involve agreements that include covenants limiting or restricting our ability to take specific actions, such as incurring additional debt, making capital expenditures, or declaring dividends. If we raise additional funds through strategic transactions, collaborations, or licensing arrangements with third parties, we may have to relinquish valuable rights to our technologies, future revenue streams, research programs, or product candidates, or to grant licenses on terms that may not be favorable to us.
We are subject to a number of risks similar to those of other companies conducting high-risk, early-stage research and development of product candidates. Principal among these risks are dependence on key individuals and intellectual property, competition from other products and companies, and the technical risks associated with the successful research, development, and clinical manufacturing of its product candidates. Our success is dependent upon our ability to continue to raise additional capital in order to fund ongoing research and development, adequately satisfy or renegotiate long-term debt obligations, obtain regulatory approval of our products, successfully commercialize our products, generate revenue, meet our obligations, and, ultimately, attain profitable operations.
See the section entitled "Risk Factors" in our Annual Report for additional risks associated with our substantial capital requirements.
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Contractual obligations and commitments
The following table summarizes our significant contractual obligations and commitments from continuing operations as of March 31,June 30, 2023 and the effects such obligations are expected to have on our liquidity and cash flows in future periods:
TotalLess Than 1 Year1 - 3 Years3 - 5 YearsMore Than 5 YearsTotalLess Than 1 Year1 - 3 Years3 - 5 YearsMore Than 5 Years
(In thousands) (In thousands)
Operating leasesOperating leases$11,066 $2,055 $4,982 $2,182 $1,847 Operating leases$11,002 $2,235 $3,803 $2,485 $2,479 
Convertible debt (1)13,845 13,845 — — — 
Cash interest payable on convertible debt242 242 — — — 
TotalTotal$25,153 $16,142 $4,982 $2,182 $1,847 Total$11,002 $2,235 $3,803 $2,485 $2,479 
(1)See "Notes to the Condensed Consolidated Financial Statements (Unaudited) - Notes 9" appearing elsewhere in this Quarterly Report for further discussion of our convertible debt.
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In addition to the obligations in the table above, as of March 31,June 30, 2023, we are party to license agreements with various third parties that contain future milestones and royalty payment obligations related to development milestones and/or commercial sales of products that incorporate or use their technologies. Because these agreements are generally subject to termination by us or are dependent on certain condition precedents within our control, no amounts are included in the tables above. As of March 31,June 30, 2023, we also had research and development commitments with third parties totaling $18.2$19.5 million that had not yet been incurred.
Off-balance sheet arrangements
We did not have during the periods presented, and we do not currently have, any off-balance sheet arrangements as defined under SEC rules.
Critical accounting policies and estimates
Our management's discussion and analysis of our financial condition and results of operations is based on our condensed consolidated financial statements, which we have prepared in accordance with generally accepted accounting principles in the United States. The preparation of these condensed consolidated financial statements requires us to make estimates and assumptions that affect the reported amounts of assets and liabilities and the disclosure of contingent assets and liabilities at the date of the financial statements, as well as the reported revenues and expenses during the reporting periods. We evaluate these estimates and judgments on an ongoing basis. We base our estimates on historical experience and on various other factors that we believe are reasonable under the circumstances, the results of which form the basis for making judgments about the carrying value of assets and liabilities that are not readily apparent from other sources. Our actual results may differ from these estimates under different assumptions or conditions.
There have been no material changes to our critical accounting policies from those described in "Management's Discussion and Analysis of Financial Condition and Results of Operations" included in our Annual Report.
Recent accounting pronouncements
For information with respect to recent accounting pronouncements and the impact of these pronouncements on our condensed consolidated financial statements, see "Notes to the Condensed Consolidated Financial Statements (Unaudited) - Note 2" appearing elsewhere in this Quarterly Report.
Item 3. Quantitative and Qualitative Disclosures About Market Risk
The following sections provide quantitative information on our exposure to interest rate risk. We make use of sensitivity analyses that are inherently limited in estimating actual losses in fair value that can occur from changes in market conditions.
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Interest rate risk
We had cash, cash equivalents and short-term and long-term investments of $111.6$95.6 million and $56.0 million as of March 31,June 30, 2023 and December 31, 2022, respectively. Our cash and cash equivalents and short-term and long-term investments consist of cash, money market funds, U.S. government debt and agency securities, and certificates of deposit. The primary objectives of our investment activities are to preserve principal, maintain liquidity, and maximize income without significantly increasing risk. Our investments consist of U.S. government debt and agency securities and certificates of deposit, which may be subject to market risk due to changes in prevailing interest rates that may cause the fair values of our investments to fluctuate. We believe that a hypothetical 100 basis point increase in interest rates would not materially affect the fair value of our interest-sensitive financial instruments and any such losses would only be realized if we sold the investments prior to maturity.
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Item 4. Controls and Procedures
Pursuant to Rule 13a-15(b) under the Securities Exchange Act of 1934, as amended (the "Exchange Act"), we carried out an evaluation, under supervision and with the participation of our management, including our Chief Executive Officer ("CEO"), who is our principal executive officer, and our Chief Financial Officer ("CFO"), who is our principal financial officer, of the effectiveness of the design and operation of our disclosure controls and procedures (as defined under Rule 13a-15(e) and 15d-15(e) under the Exchange Act) as of the end of the period covered by this report. Based upon that evaluation, as of the end of the period covered by this report, our CEO and CFO concluded that our disclosure controls and procedures are effective at the reasonable assurance level to ensure that information required to be disclosed by us in the reports that we file or submit under the Exchange Act, is recorded, processed, summarized and reported, within the time periods specified in the SEC's rules and forms, and that such information is accumulated and communicated to our management, including our CEO and CFO, as appropriate, to allow timely decisions regarding required disclosure.
There has been no change in our internal control over financial reporting during the three months ended March 31,June 30, 2023, that has materially affected, or is reasonably likely to materially affect, our internal control over financial reporting.
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PART II. OTHER INFORMATION 
Item 1. Legal Proceedings
In the course of our business, we are involved in litigation or legal matters, including governmental investigations. Such matters are subject to many uncertainties and outcomes are not predictable with assurance. We accrue liabilities for such matters when it is probable that future expenditures will be made and such expenditures can be reasonably estimated. As of March 31,June 30, 2023, we do not believe that any such matters, individually or in the aggregate, will have a material adverse effect on our business, financial condition, results of operations, or cash flows.
See "Notes to the Condensed Consolidated Financial Statements (Unaudited) - Note 14" appearing elsewhere in this Quarterly Report for further discussion of ongoing legal matters.
Item 1A. Risk Factors
As disclosed in "Summary of Risk Factors" and "Item 1A. Risk Factors" in our Annual Report, there are a number of risks and uncertainties that may have a material effect on the operating results of our business and our financial condition. There are no additional material updates or changes to our risk factors since the filing of our Annual Report.
In evaluating our risks, readers also should carefully consider the risk factors discussed in our Annual Report, which could materially affect our business, financial condition, or operating results, in addition to the other information set forth in this report and in our other filings with the SEC.
Item 2. Unregistered Sales of Equity Securities and Use of Proceeds
None.
Item 3. Defaults on Senior Securities
None.
Item 4. Mine Safety Disclosures
Not applicable.
Item 5. Other Information
None.
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Item 6. Exhibits
Exhibit
No.
 Description
10.1+
31.1 
31.2 
32.1** 
32.2** 
101** 
Interactive Data File (Quarterly Report on Form 10-Q, for the quarterly period ended March 31,June 30, 2023, formatted in Inline XBRL (eXtensible Business Reporting Language)).
 
Attached as Exhibit 101.0 to this Quarterly Report on Form 10-Q are the following documents formatted in XBRL: (i) the Condensed Consolidated Balance Sheets as of March 31,June 30, 2023 and December 31, 2022, (ii) the Condensed Consolidated Statements of Operations for the three and six months ended March 31,June 30, 2023 and 2022, (iii) the Condensed Consolidated Statements of Comprehensive Loss for the three and six months ended March 31,June 30, 2023 and 2022, (iv) the Condensed Consolidated Statements of Shareholders' Equity for the three and six months ended March 31,June 30, 2023 and 2022, (v) the Condensed Consolidated Statements of Cash Flows for the threesix months ended March 31,June 30, 2023 and 2022, and (vi) the Notes to the Condensed Consolidated Financial Statements.
104** Cover Page Interactive Data File (embedded within the Inline XBRL document).
**    Furnished herewith.
+ Certain confidential portions of this exhibit were omitted by means of marking such portions with brackets [*****] because the identified confidential portions (i) are not material and (ii) is the type of information the Registrant treats as private or confidential, in accordance with Regulation S-K, Item 601(b)(10).
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SIGNATURES
Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized.
 
 Precigen, Inc.
 (Registrant)
Date: May 10,August 9, 2023 By: /s/  HARRY THOMASIAN JR.
  Harry Thomasian Jr.
  Chief Financial Officer
  (Principal Financial and Accounting Officer)

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