UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

FORM

10-Q

(Mark One)

☑ ☒	QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the quarterly period ended March 31, ~~2021;~~

2022;

☐	TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the transition period from

Commission file number

001-38161

Calyxt, Inc.

(Exact name of registrant as specified in its charter)

~~Delaware~~		~~27-1967997~~
Delaware		27-1967997
(State or other jurisdiction of		~~(I.R.S. Employer~~
incorporation or organization)		(I.R.S. Employer Identification No.)

2800 Mount Ridge Road Roseville, MN		55113-1127
~~Roseville, MN~~		~~55113-1127~~
(Address of principal executive offices)		(Zip Code)

(651)

683-2807

(Registrant’s telephone number, including area code)

N/A

(Former name, former address and former fiscal year, if changed since last report)

Securities registered pursuant to Section 12(b) of the Act.


Title of each class	Trading Symbol(s)	Name of each exchange on which registered
Common Stock (0.0001 par value)	CLXT	The NASDAQ Global Market

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes ☑☒ No ☐

Indicate by check mark whether the registrant has submitted electronically every Interactive Data File required to be submitted pursuant to Rule 405 of Regulation

S-T (§

(§232.405 of this chapter) during the preceding 12 months (or for such shorter period that the registrant was required to submit such files). Yes ☑☒ No ☐

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a

non-accelerated

filer, a smaller reporting company or an emerging growth company. See the definitions of “large accelerated filer,” “accelerated filer,” “smaller reporting company”, and “emerging growth company” in Rule

12b-2

of the Exchange Act:


Large accelerated filer	☐	Accelerated filer	☐

Non-accelerated filer	☑ ☒	Smaller reporting company	☐

		Emerging growth company	☑ ☒

If an emerging growth company, indicate by check mark if the registrant has elected not to use the extended transition period for complying with any new or revised financial accounting standards provided pursuant to Section 13(a) of the Exchange Act. ☐

Indicate by check mark whether the registrant is a shell company (as defined in Rule

12b-2

of the Exchange Act). ☐ Yes ☑☒ No

As of May 6~~, 2021,~~ 4, 2022, there were ~~37,200,473~~

42,768,163 shares of common stock, $0.0001 par value per share, outstanding.

Table of Contents



PART I. FINANCIAL INFORMATION		4	3

Item 1. Consolidated Financial Statements		4	3

Item 2. Management’s Discussion and Analysis of Financial Condition and Results of Operations		15	18

Item 3. Quantitative and Qualitative Disclosures About Market Risk		25	26

Item 4. Controls and Procedures		25	26

PART II. OTHER INFORMATION		26	27

Item 1. Legal Proceedings		26	27

Item 1A. Risk Factors		26	27

Item 2. Unregistered Sales of Equity Securities and Use of Proceeds		26	27
Item 5. Other Information			27
Item 6. Exhibits		27	28
SIGNATURE
~~SIGNATURE~~	29	28

Table of Contents

Terms

When ~~we use~~ the terms ~~“we,” “us,”~~ the ~~“Company,”~~“Company” or ~~“our”~~“its” are used in this report, unless the context otherwise requires, wethose terms are ~~referring~~being used to refer to Calyxt, Inc. When ~~we use~~ the term “Cellectis,” ~~we are referring~~is used, it is being used to refer to Cellectis S.A., ~~our~~the Company’s majority stockholder. Cellectis is a clinical-stage biotechnology company employing its core proprietary technologies to develop

best-in-class

products in the field of immuno-oncology.

~~We own~~

The Company owns the names PlantSpring, BioFactory, Plant Cell Matrix, and the abbreviation PCM. The Company also owns the trademarks ~~Calyxt®~~ Calyxt

and ~~Calyno®; we also own~~Calyno

and owns or ~~license~~licenses other trademarks, trade names, and service marks ~~of Calyxt~~ appearing in this Quarterly Report on Form

10-Q.

The names and trademarks ~~“Cellectis®”~~ Cellectis

and ~~“TALEN®”~~TALEN

, ~~and~~along with any other trademarks, trade names, and service marks of Cellectis appearing in the Company’s Annual Report on Form

10-K

are the property of Cellectis. This Quarterly Report on Form

10-Q ~~also contains~~

may contain additional trade names, trademarks, and service marks belonging to other companies. ~~We do~~The Company does not intend ~~our~~its use or display of other parties’ trademarks, trade names, or service marks to imply, and such use or display should not be construed to imply a relationship with, or endorsement or sponsorship of ~~us by~~ these other ~~parties.~~

parties

Cautionary Note Regarding Forward-Looking Statements

This Quarterly Report on Form

10-Q

contains “forward-looking statements” within the meaning of the federal securities laws, including Section 27A of the Securities Act of 1933, as amended (the Securities Act), and Section 21E of the Securities Exchange Act of 1934, as amended (the Exchange Act). WeThe Company may also make forward-looking statements in other reports filed with the Securities and Exchange Commission (SEC), in materials delivered to stockholders, and in press releases. In addition, ~~our~~the Company’s representatives may from time to time make oral forward-looking statements.

~~We have~~

The Company has made these forward-looking statements in reliance on the safe harbor provisions of the U.S. Private Securities Litigation Reform Act of 1995. In some cases, you can identify these statements by forward-looking words such as “anticipates,” “believes,” “continue,” “estimates,” “expects,” ~~“targets,”~~ “intends,” “may,” “might,” “plans,” ~~“potential,”~~ “predicts,” “projects,” “should,” “targets,” “will,” or the negative of these terms and other similar terminology.Forward-looking statements in this report include statements about the ~~potential impact of the COVID-19 pandemic on our business and operating results; our~~Company’s future financial ~~performance;~~performance, including its cash runway; its product pipeline and development; ~~our~~its business model and ~~principal strategy~~strategies for the development, commercialization and sales of commercial products; ~~regulatory progression;~~commercial demand for its synthetic biology solutions; the development and deployment of its PlantSpring technology platform; its ability to deploy and leverage its artificial intelligence and machine learning (AIML) capabilities; the ability to scale production capability for its BioFactory production system; potential ~~collaborations,~~development agreements, partnerships, customer relationships, and licensing arrangements and their contribution to ~~our~~its financial results, cash usage, and growth strategies; the potential impact of the

COVID-19

pandemic on its business and operating results; and anticipated trends in ~~our~~its business. These and other forward-looking statements are predictions and projections about future events and trends based on ~~our~~the Company’s current expectations, objectives, and intentions and are premised on current assumptions. ~~Our~~The Company’s actual results, level of activity, performance, or achievements could be materially different than those expressed, implied, or anticipated by forward-looking statements due to a variety of factors, including, but not limited to: the ~~severity and duration of the evolving COVID-19 pandemic and the resulting impact on macro-economic conditions; the~~ impact of increased ~~competition;~~competition, including competition from a broader array of synthetic biology companies; competition for customers, partners, and licensees and the successful execution of development and licensing agreements; disruptions at ~~our~~its key ~~facilities;~~facilities, including disruptions impacting its BioFactory production system; flaws in AIML algorithms, insufficiency of data inputs required by such algorithms, and human error in interacting with AIML; changes in customer preferences and market acceptance of ~~our~~its products; ~~competition~~changes in market consensus as to what attributes are required for ~~collaboration partners and licensees and the successful execution of collaborations and licensing agreements;~~a product to be considered “sustainable”; the impact of adverse events during development, including unsuccessful pilot production of plant-based chemistries or field ~~trials or developments trials or disruptions in seed production;~~trials; the impact of improper handling of ~~our~~its product candidates ~~by unaffiliated third parties~~ during ~~development, such as the improper aerial spraying of our high fiber wheat product candidate;~~development; failures by third-party contractors; inaccurate demand ~~forecasting;~~forecasting or milestone and royalty payment projections; the effectiveness of commercialization efforts by commercial partners or licensees; ~~our ability to make grain sales on terms acceptable to us; the timing of our grain sales; our ability to collect accounts receivable;~~ disruptions to supply chains, including ~~transportation and storage functions; commodity price conditions;~~raw material inputs for its BioFactory; the impact of changes or increases in oversight and regulation; disputes or challenges regarding intellectual property; proliferation and continuous evolution of new technologies; management changes; dislocations in the capital markets; the severity and duration of the evolving

COVID-19

pandemic and the resulting impact on macro-economic conditions; and other important factors discussed ~~under the heading~~in Part I, Item 1A, “Risk Factors” in ~~our~~the Company’s filings with the ~~Securities and Exchange Commission (SEC),~~SEC, included in Part I, Item 1A of ~~our~~its Annual Report on Form

10-K

for the year ended December 31, ~~2020,~~2021, which was filed with the SEC on March ~~4, 2021 (our~~3, 2022 (its Annual Report) and ~~our~~its subsequent reports on Forms

10-Q

and

8-K

filed with the SEC.

Any forward-looking statements made by usthe Company in this Quarterly Report on Form

10-Q

are based only on ~~information~~ currently available ~~to us~~information and ~~speaks~~speak only as of the date of this report. Except as otherwise required by securities and other applicable laws, ~~we do~~the Company does not assume any obligation to publicly provide revisions or updates to any forward-looking statements, whether as a result of new information, future developments or otherwise, should circumstances ~~change, except as otherwise required by law.~~

change.

- 21 -

Table of Contents

Market Data

Unless otherwise indicated, information contained in this Quarterly Report concerning ~~our~~the Company’s industry and the markets in which ~~we operate~~it operates is based on information from various sources, including independent industry publications. In presenting this information, ~~we have~~the Company has also made assumptions based on such data and other similar sources, and on ~~our~~the Company’s knowledge of, and ~~our~~its experience to date in, the potential markets for ~~our~~its product. The industry in which ~~we operate~~the Company operates is subject to a high degree of uncertainty and risk due to a variety of factors, including those described in the section entitled “Risk Factors” in ~~our~~its Annual Report and other subsequent reports on Forms

10-Q

and

8-K

filed with the SEC. These and other factors could cause results to differ materially from those expressed in the estimates made by the independent parties and by ~~us.~~

the Company.

Website Disclosure

~~We use our~~

The Company uses its website (www.calyxt.com), ~~our~~its corporate Twitter account (@Calyxt_Inc) and ~~our~~its corporate LinkedIn account ~~(https:~~

(https://www.linkedin.com/company/calyxt-inc)

as routine channels of distribution of company information, including press releases, analyst presentations, and supplemental financial information, as a means of disclosing material

non-public

information and for complying with ~~our~~the Company’s disclosure obligations under Regulation FD. Accordingly, investors should monitor ~~our~~its website and ~~our~~its corporate Twitter and LinkedIn accounts in addition to following press releases, filings with the SEC, and public conference calls and webcasts.

Additionally, ~~we provide~~the Company provides notifications of announcements as part of ~~our~~its website. Investors and others can receive notifications of new press releases posted on ~~our~~the Company’s website by signing up for email alerts.

None of the information provided on ~~our~~the Company’s website, in ~~our~~its press releases or public conference calls and webcasts, or through social media is incorporated into, or deemed to be a part of, this Quarterly Report or in any other report or document ~~we file~~the Company files with the SEC, and any references to ~~our~~its website or ~~our~~its corporate Twitter and LinkedIn accounts are intended to be inactive textual references only.

- 32 -

Table of Contents

PART I. FINANCIAL INFORMATION

Item 1. Financial Statements

CALYXT, INC.

CONSOLIDATED BALANCE SHEETS

(In Thousands, Except Par Value and Share Amounts)

March 31, 2021
(unaudited)

December 31,
2020

Assets

Current assets:

Cash and cash equivalents
$
16,386

$
17,299

Short-term investments

3,045

11,698

Restricted cash

393

393

Accounts receivable

1,354

4,887

Inventory

4,532

1,383

Prepaid expenses and other current assets

3,347

3,930

Total current assets

29,057

39,590

Non-current restricted cash

597

597

Land, buildings, and equipment

22,549

22,860

Other non-current assets

225

280

Total assets
$
52,428

$
63,327

Liabilities and stockholders’ equity

Current liabilities:

Accounts payable
$
959

$
929

Accrued expenses

3,058

2,891

Accrued compensation

1,764

1,950

Due to related parties

114

766

Current portion of financing lease obligations

372

364

Other current liabilities

45

45

Total current liabilities

6,312

6,945

Financing lease obligations

17,780

17,876

Long-term debt

1,518

1,518

Other non-current liabilities

1,213

113

Total liabilities

26,823

26,452

Stockholders’ equity:

Common stock, $0.0001 par value; 275,000,000 shares authorized; 37,263,339 shares issued and 37,163,187 shares outstanding as of March 31, 2021, and 37,165,196 shares issued and 37,065,044 shares outstanding as of December 31, 2020

4

4

Additional paid-in capital

203,565

204,807

Common stock in treasury, at cost; 100,152 shares as of March 31, 2021, and December 31, 2020

(1,043
)

(1,043
)
Accumulated deficit

(176,921
)

(166,893
)
Total stockholders’ equity

25,605

36,875

Total liabilities and stockholders’ equity
$
52,428

$
63,327


	March 31, 2022 (unaudited)			December 31, 2021


Assets
Current assets:
Cash and cash equivalents	$	17,285		$	13,823
Restricted cash		499			499
Prepaid expenses and other current assets		1,189			859

Total current assets		18,973			15,181
Non-current restricted cash		99			99
Land, buildings, and equipment		5,125			21,731
Operating lease right-of-use asset s		13,973			0

Other non-current assets		175			183

Total assets	$	38,345		$	37,194

Liabilities and stockholders’ equity
Current liabilities:
Accounts payable	$	1,167		$	1,260
Accrued expenses		379			339
Accrued compensation		2,209			2,522
Due to related parties		64			172
Current portion of financing lease obligations		290			370
Common stock warrants		4,976			0
Other current liabilities		435			191

Total current liabilities		9,520			4,854
Financing lease obligations		89			17,506
Operating lease obligations		13,742			0
Other non-current liabilities		73			702

Total liabilities		23,424			23,062

Stockholders’ equity:
Common stock, $0.0001 par value; 275,000,000 shares authorized; 42,841,915 shares issued and 42,741,763 shares outstanding as of March 31, 2022, and 38,874,146 shares issued and 38,773,994 shares outstanding as of December 31, 2021		5			4
Additional paid-in capital		216,838			211,263
Common stock in treasury, at cost; 100,152 shares as of March 31, 2022, and December 31, 2021		(1,043	)		(1,043	)
Accumulated deficit		(200,879	)		(196,092	)

Total stockholders’ equity		14,921			14,132

Total liabilities and stockholders’ equity	$	38,345		$	37,194

See accompanying notes to these consolidated financial statements.

- 43 -

Table of Contents

CALYXT, INC.

CONSOLIDATED STATEMENTS OF OPERATIONS

(Unaudited and in Thousands Except Shares and Per Share Amounts)

Three Months Ended March 31,

2021

2020

Revenue
$
4,402

$
2,377

Cost of goods sold

6,745

3,884

Gross margin

(2,343
)

(1,507
)
Operating expenses:

Research and development

3,050

2,787

Selling, general, and administrative

4,258

6,298

Management fees and royalties

30

62

Total operating expenses

7,338

9,147

Loss from operations

(9,681
)

(10,654
)
Interest, net

(346
)

(398
)
Non-operating expenses

(1
)

(11
)
Loss before income taxes

(10,028
)

(11,063
)
Income taxes

0

0

Net loss
$
(10,028
)

$
(11,063
)
Basic and diluted net loss per share
$
(0.27
)

$
(0.34
)
Weighted average shares outstanding - basic and diluted

37,136,338

32,988,141

Anti-dilutive stock options, restricted stock units, and performance stock units

5,013,780

5,328,268


	Three Months Ended March 31,
	2022			2021
Revenue	$	32		$	4,402
Cost of goods sold		0			6,745

Gross profit		32			(2,343	)
Operating expenses:
Research and development		2,941			3,050
Selling, general, and administrative		3,180			4,258
Management fees		0			30

Total operating expenses		6,121			7,338

Loss from operations		(6,089	)		(9,681	)
Interest, net		(17	)		(346	)
Non-operating expenses		487			(1	)

Loss before income taxes		(5,619	)		(10,028	)
Income taxes		0			0

Net loss	$	(5,619	)	$	(10,028	)

Basic and diluted net loss per share	$	(0.13	)	$	(0.27	)

Weighted average shares outstanding – basic and diluted		42,020,090			37,136,338

Anti-dilutive stock options, restricted stock units, performance stock units, and common stock warrants		16,276,362			5,013,780

See accompanying notes to these consolidated financial statements.

- 54 -

Table of Contents

CALYXT, INC.

CONSOLIDATED STATEMENTS OF STOCKHOLDERS’ EQUITY

(Unaudited and in Thousands Except Shares Outstanding)

Three months ended
March 31, 2021

Shares
Outstanding

Common
Stock

Additional
Paid-In
Capital

Shares
in
Treasury

Accumulated
Deficit

Accumulated
Other
Comprehensive
Income

Total
Stockholders’
Equity

Balance at December 31, 2020

37,065,044

$
4

$
204,807

$
(1,043
)

$
(166,893
)

$
—

$
36,875

Net loss

—

—

—

—

(10,028
)

—

(10,028
)
Stock-based compensation

—

—

(1,450
)

—

—

—

(1,450
)
Issuance of common stock

98,143

—

208

—

—

—

208

Shares withheld for net share settlement

—

—

—

—

—

—

—

Balance at March 31, 2021

37,163,187

$
4

$
203,565

$
(1,043
)

$
(176,921
)

$
-

$
25,605

Three months ended
March 31, 2020

Shares
Outstanding

Common
Stock

Additional
Paid-In
Capital

Shares
in
Treasury

Accumulated
Deficit

Accumulated
Other
Comprehensive
Income (Loss)

Total
Stockholders’
Equity

Balance at December 31, 2019

32,951,329

$
3

$
185,588

$
(1,043
)

$
(122,057
)

$
17

$
62,508

Net loss

—

—

—

—

(11,063
)

—

(11,063
)
Stock-based compensation

—

—

1,271

—

—

—

1,271

Issuance of common stock

57,110

—

—

—

—

—

—

Shares withheld for net share settlement

(17,792
)

—

—

—

—

—

—

Other comprehensive loss

—

—

—

—

—

(180
)

(180
)
Balance at March 31, 2020

32,990,647

$
3

$
186,859

$
(1,043
)

$
(133,120
)

$
(163
)

$
52,536


Three Months Ended March 31, 2022	Shares Outstanding		Common Stock		Additional Paid-In Capital			Shares in Treasury			Accumulated Deficit			Total Stockholders’ Equity
Balance at December 31, 2021		38,773,994	$	4	$	211,263		$	(1,043	)	$	(196,092	)	$	14,132
Net loss		—		—		—			—			(5,619	)		(5,619	)
Stock-based compensation		—		—		531			—			—			531
Issuance of common stock from stock-based compensation awards		87,769		—		—			—			—			—
Issuance of common stock from ATM facility, net of offering expenses		—		—		(7	)		—			—			(7	)
Issuance of common stock and pre-funded warrants in registered offering, net of $0.5 million of offering costs		3,880,000		1		5,051			—			—			5,052
Cumulative effect of adoption of lease accounting standard		—		—		—			—			832			832

Balance at March 31, 2022		42,741,763	$	5	$	216,838		$	(1,043	)	$	(200,879	)	$	14,921


Three Months Ended March 31, 2021	Shares Outstanding		Common Stock		Additional Paid-In Capital			Shares in Treasury			Accumulated Deficit			Total Stockholders’ Equity
Balance at December 31, 2020		37,065,044	$	4	$	204,807		$	(1,043	)	$	(166,893	)	$	36,875
Net loss		—		—		—			—			(10,028	)		(10,028	)
Stock-based compensation		—		—		(1,450	)		—			—			(1,450	)
Issuance of common stock from stock-based compensation awards		98,143		—		208			—			—			208

Balance at March 31, 2021		37,163,187	$	4	$	203,565		$	(1,043	)	$	(176,921	)	$	25,605

See accompanying notes to these consolidated financial statements.

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Table of Contents

CALYXT, INC.

CONSOLIDATED STATEMENTS OF CASH FLOWS

(Unaudited and in Thousands)

Three Months Ended March 31,

2021

2020

Operating activities

Net loss
$
(10,028
)

$
(11,063
)
Adjustments to reconcile net loss to net cash used by operating activities:

Depreciation and amortization

585

452

Stock-based compensation

(1,450
)

1,271

Changes in operating assets and liabilities:

Accounts receivable

3,533

281

Due to/from related parties

(652
)

(430
)
Inventory

(3,149
)

(604
)
Prepaid expenses and other current assets

583

(786
)
Accounts payable

30

8

Accrued expenses

167

(451
)
Accrued compensation

(186
)

(818
)
Other non-current liabilities

1,100

(9
)
Other

50

(89
)
Net cash used by operating activities

(9,417
)

(12,238
)
Investing activities

Sales and (purchases) of short-term investments, net

8,653

(38,620
)
Purchases of land, buildings, and equipment

(269
)

(317
)
Net cash provided by (used by) investing activities

8,384

(38,937
)
Financing activities

Repayments of financing lease obligations

(88
)

(45
)
Proceeds from the exercise of stock options

208

—

Net cash provided by (used by) financing activities

120

(45
)
Net decrease in cash, cash equivalents, and restricted cash

(913
)

(51,220
)
Cash, cash equivalents, and restricted cash - beginning of period

18,289

60,038

Cash, cash equivalents, and restricted cash – end of period
$
17,376

$
8,818


	Three Months Ended March 31,
	2022			2021
Operating activities
Net loss	$	(5,619	)	$	(10,028	)
Adjustments to reconcile net loss to net cash used by operating activities:
Depreciation and amortization		370			585
Stock-based compensation		531			(1,450	)
Unrealized (gain) loss on mark-to-market of common stock warrants		(435	)		—
Changes in operating assets and liabilities:
Accounts receivable		—			3,533
Due to/from related parties		(108	)		(652	)
Inventory		—			(3,149	)
Prepaid expenses and other current assets		(110	)		583
Accounts payable		(145	)		30
Accrued expenses		37			167
Accrued compensation		(313	)		(186	)
Other		(612	)		1,150

Net cash used by operating activities		(6,404	)		(9,417	)

Investing activities
Sales and (purchases) of short-term investments, net		—			8,653
Purchases of land, buildings, and equipment		(545	)		(269	)

Net cash (used by) provided by investing activities		(545	)		8,384

Financing activities
Proceeds from the issuance of common stock and pre-funded warrants		11,209			—
Costs incurred related to the issuance of common stock and pre-funded warrants		(704	)		—
Repayments of financing lease obligations		(94	)		(88	)
Proceeds from the exercise of stock options		—			208

Net cash provided by financing activities		10,411			120

Net increase (decrease) in cash, cash equivalents, and restricted cash		3,462			(913	)
Cash, cash equivalents, and restricted cash – beginning of period		14,421			18,289

Cash, cash equivalents, and restricted cash – end of period	$	17,883		$	17,376

See accompanying notes to these consolidated financial statements.

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Table of Contents

CALYXT, INC.

NOTES TO THE CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)

1. BASIS OF PRESENTATION & SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES

~~Our~~

The unaudited consolidated financial statements of Calyxt, Inc. (Calyxt or the Company) have been prepared in accordance with accounting principles generally accepted in the United States (U.S. GAAP or GAAP) for interim financial information and with the rules and regulations of the Securities and Exchange Commission (SEC) applicable to interim financial statements. In ~~our~~the Company’s opinion, the accompanying consolidated financial statements reflect all adjustments necessary for a fair presentation of ~~our~~its statements of financial position, results of operations, and cash flows for the periods presented but they do not include all of the information and footnotes required by U.S. GAAP for complete financial statements. Except as otherwise disclosed herein, these adjustments consist of normal recurring items. Operating results for interim periods are not necessarily indicative of results that may be expected for the fiscal year as a whole or any other interim period.

The preparation of the consolidated financial statements in conformity with U.S. GAAP requires usthe Company to make estimates and assumptions that affect the reported amounts of assets, liabilities, revenues, expenses, and the related disclosures at the date of the consolidated financial statements and during the reporting period. Actual results could materially differ from these estimates.

Certain prior year amounts have been reclassified to conform to the current year presentation.

For further information, refer to the audited consolidated financial statements and notes thereto included in ~~our~~the Company’s Annual Report on Form

10-K

for the year ended December 31, ~~2020,~~2021, filed with the SEC on March ~~4, 2021.~~3, 2022. The accompanying Balance Sheet as of December 31, ~~2020,~~2021, was derived from the audited consolidated financial statements. This Quarterly Report on Form

10-Q

should be read in conjunction with ~~our~~the Company’s consolidated financial statements and notes included in the Annual Report on Form

10-K

for the year ended December 31, ~~2020.~~

2021.

Net Loss Per Share

~~All anti-dilutive stock options, restricted stock units, and performance stock units are excluded from the calculation of net loss per share.~~

Due to ~~our~~the Company’s net loss position for the three months ended March 31, ~~2021~~2022, and March 31, ~~2020,~~2021, all of ~~our~~its outstanding stock options, restricted stock units ~~and~~(RSUs), performance stock units (PSUs), and warrants to purchase common stock (Common Warrants) are considered anti-dilutive and excluded from the calculation of net loss per share. Accordingly, the treasury method was not used in determining the number of anti-dilutive stock options, RSUs, PSUs, or Common Warrants.

Warrants

The Company issued

pre-funded

warrants to purchase common stock

(Pre-Funded

Warrants) in a

follow-on

offering on February 23, 2022 (the

Follow-On

Offering). The

Pre-Funded

Warrants are not mandatorily redeemable and do not expire, are exercisable for one share of the Company’s common stock for $0.0001

per share, and the Company has sufficient authorized shares available to settle the Pre-Funded Warrants when exercised. The Pre-Funded Warrants are considered equity instruments and are reported in stockholders’ equity in the Company’s consolidated balance sheet. The shares issuable upon exercise of the Pre-Funded Warrants are included in the determination of the Company’s loss per share. On May 4, 2022, the Company received a notice of exercise with respect to the full exercise of all outstanding Pre-Funded Warrants.

The Company also issued Common Warrants in the

Follow-On

Offering. The Common Warrants expire on August 23, 2027,

and

are

exercisable for one share of the Company’s common stock for $1.41 per share. The Common Warrants have been classified as a liability because they include a put option election available to their holder that is contingently exercisable if the Company enters into a fundamental transaction (Fundamental Transaction), generally described as a “change of control” (the Change of Control Put). If the Change of Control Put is exercised by the holder of a Common Warrant, they may elect to receive either the consideration of the Fundamental Transaction or put the Common Warrant back to the Company in exchange for cash, based on terms and timing specified in the Common Warrant agreement. If the Change of Control Put option is exercised, the Company is required to pay cash to the holder in an amount as determined by the Black Scholes pricing model, with assumptions determined in accordance with the terms of the Common Warrants.

The Common Warrants are reported at fair value with changes in fair value reported in earnings. The Company reports the changes in fair value of the Common Warrants in

non-operating

expenses in its consolidated statements of operations.

- 7 -

Table of Contents

Recently Issued Accounting Pronouncements

In February 2016, the FASB issued ASU No.

2016-02, Leases

(Topic 842) and in July 2018, ASU

No. 2018-10,

Codification Improvements to Topic 842, Leases, and ASU

2018-11, Leases (Topic

842) – Targeted Improvements (collectively, the Standard). The Standard requires lessees to record assets and liabilities on the balance sheet for all leases with terms longer than 12 months. The new standard establishes a

right-of-use

model (ROU) that requires a lessee to recognize a ROU asset and lease liability on the balance sheet for all leases with a term longer than 12 months. Leases will be classified as either finance or operating, with the classification affecting the pattern of expense recognition in the income statement.

The Company adopted the Standard as of January 1, 2022, using the transition method which does not require revisions to comparative periods. The Company elected to implement the transition package of practical expedients permitted within the Standard, which among other things, allows it to carryforward the historical lease classification. In addition, the Company elected the hindsight practical expedient to determine the lease term for existing leases and it also made an accounting policy election to not record leases with an initial term of 12 months or less on its consolidated balance sheet.

The Company’s adoption of the Standard required it to remove the previously reported amounts for land, buildings, and equipment associated with its headquarters and laboratory facility lease as well as the associated liability. The Company assessed the elements of its lease agreement and upon adoption, recorded an operating lease associated with the sale leaseback of land component of the lease, and a second operating lease associated with the building component of the lease. The Company recorded operating lease assets and liabilities of $14.1 million within its consolidated balance sheet as of January 1, 2022. The Standard had no impact on the Company’s consolidated statements of operations o

cash flows. The $0.8 million cumulative effect of the adoption of the Standard was recorded to stockholders’ equity. See Note 8 for further information regarding the Company’s leases.

In June 2016, the FASB issued ASU

No. 2016-13,

“Financial Instruments – Credit Losses (Topic 326)” (ASU

2016-13).

ASU

2016-13

creates accounting requirements on how to account for credit losses on most financial assets and certain other instruments. This will require the estimation of lifetime expected credit losses and corresponding recognition of allowance for losses on trade and other receivables, loans, and other instruments held at amortized cost. The ASU requires certain recurring disclosures and is effective for annual periods, and interim periods within those annual periods, beginning on or after December 15, 2023. The Company is in the process of analyzing the impact of this standard on its results of operations.

2. GOING CONCERN

The Company has incurred losses since its inception and its net loss was $5.6 million for the three months ended March 31, 2022, and it used $6.4 million of cash for operating activities for the three months ended March 31, 2022. The Company’s primary sources of liquidity are its cash and cash equivalents, with additional liquidity accessible, subject to market conditions and other factors, including limitations that may apply to the Company under applicable SEC regulations, from the capital markets, including under the Open Market Sale Agreement

with Jefferies LLC (the ATM Facility)

As of March 31, 2022, the Company had $17.9 million of cash, cash equivalents, and restricted cash. The Company’s restricted cash is associated with its equipment financing leases and was $0.6 million as of March 31, 2022, with $0.5 million scheduled to be returned in December 2022. Current liabilities were $9.5 million as of March 31, 2022.

On February 23, 2022, the Company issued 3,880,000 shares of its common stock,

Pre-Funded

Warrants to purchase up to 3,880,000 shares of its common stock, ~~units.~~

2. and Common Warrants to purchase up to 7,760,000 shares of its common stock in the

Follow-On

Offering. In the aggregate, the Company received net proceeds of $10.0 million, after deducting approximately $0.9 million of underwriting discounts and estimated other offering expenses.

The Company has incurred losses since its inception and anticipates that it will continue to generate losses for the next several years. Over the longer term and until the Company can generate cash flows sufficient to support its operating capital requirements, it expects to finance a portion of future cash needs through (i) cash on hand, (ii) commercialization activities, which may result in various types of revenue streams from (a) future product development agreements and technology licenses, including upfront and milestone payments, annual license fees, and royalties; and (b) product sales from its proprietary BioFactory production system; (iii) government or other third-party funding, which the Company expects to be more readily available if Cellectis were to own less than 50 percent of the Company’s common stock, (iv) public or private equity or debt financings, or (v) a combination of the foregoing. However, additional capital may not be available on reasonable terms, if at all.

For example, based on the Company’s public float, as of the date of the filing of its Annual Report on Form

10-K,

the Company is only permitted to utilize a “shelf” registration statement, including the registration statement under which the Company’s

ATM Facility is operated, subject to Instruction I.B.6 to Form

S-3,

which is referred to as the “baby shelf” rules. For so long as the Company’s public float is less than $75,000,000, it may not sell more than the equivalent of

one-third

of its public float during any twelve consecutive months pursuant to the baby shelf rules. Although alternative public and private transaction structures are expected to be available, these may require additional time and cost, may impose operational restrictions on the Company, and may not be available on attractive terms.

- 8 -

Table of Contents

The Company’s ability to continue as a going concern will depend on its ability to obtain additional public or private equity or debt financing, obtain government or private grants and other similar types of funding, attain further operating efficiencies, reduce or contain expenditures, and, ultimately, to generate revenue. The Company believes that its cash, cash equivalents, and restricted cash as of March 31, 2022, considering its plan to continue to invest in the growth and scaling of its BioFactory production system and AIML capabilities

the $10.0 million of net proceeds from the

Follow-On

Offering,

and considering additional efforts in reassessing its discretionary spending,

is sufficient to fund its operations

into early 2023.

The Company’s management has concluded there is substantial doubt regarding its ability to continue as a going concern because it anticipates that it will need to raise additional capital to support this business plan for a period of

months or more from the date of this filing.

The accompanying financial statements have been prepared on a going concern basis, which contemplates the realization of assets and satisfaction of liabilities in the ordinary course of business. The financial statements do not include any adjustments relating to the recoverability and classification of recorded asset amounts or the amounts and classification of liabilities that might result from the outcome of the uncertainties described above.

If the Company is unable to raise additional capital in a sufficient amount or on acceptable terms, management may be required to implement various cost reduction and other cash-focused measures to manage liquidity and the Company may have to significantly delay, scale back, or cease operations, in part or in full. If the Company raises additional funds through the issuance of additional debt or equity securities, it could result in dilution to its existing stockholders and increased fixed payment obligations, and these securities may have rights senior to those of the Company’s shares of common stock. Any of these events could significantly harm the Company’s business, financial condition, and prospects.

3. FINANCIAL INSTRUMENTS MEASURED AT FAIR VALUE AND CONCENTRATIONS OF CREDIT RISK

Financial Instruments Measured at Fair Value and Financial Statement Presentation

Financial instruments including cash and cash equivalents, restricted cash, accounts payable, and all other current liabilities have carrying values that approximate fair value. ~~We measure short-term investments and commodity derivative contracts at fair value~~The Company measures common stock warrants on a ~~recurring~~quarterly basis. The accounting guidance establishes a three-tier hierarchy, which prioritizes the inputs used in the valuation methodologies in measuring fair value as of the measurement date as follows:

Level 1: Fair values are based on unadjusted quoted prices in active trading markets for identical assets and liabilities.

Level 2: Fair values are based on observable quoted prices other than those in Level 1, such as quoted prices for similar assets or liabilities in active markets or quoted prices for identical assets or liabilities in inactive markets.

Level 3: Fair values are based on at least one significant unobservable input for the asset or liability.

~~- 8 -~~

~~Table of Contents~~

Fair Value Measurements and Financial Statement Presentation

The fair values of ~~our~~the Company’s financial instruments measured at fair value and their respective levels in the fair value hierarchy as of March 31, ~~2021, and December 31, 2020,~~2022, were as follows:

March 31, 2021

March 31, 2021

Fair Values of Assets

Fair Values of Liabilities

In Thousands
Level 1

Level 2

Level 3

Total

Level 1

Level 2

Level 3

Total

Other items reported at fair value:

Short-term investments
$
3,045

$
—

$
—

$
3,045

$
—

$
—

$
—

$
—

Commodity derivative contracts

266

—

—

266

—

—

—

—

Total
$
3,311

$
—

$
—

$
3,311

$
—

$
—

$
—

$
—


	March 31, 2022								March 31, 2022
	Fair Values of Assets								Fair Values of Liabilities
In Thousands	Level 1		Level 2		Level 3		Total		Level 1		Level 2		Level 3		Total
Other items reported at fair value:
Common stock warrants	$	—	$	—	$	—	$	—	$	—	$	—	$	4,976	$	4,976

Total	$	—	$	—	$	—	$	—	$	—	$	—	$	4,976	$	4,976

December 31, 2020

December 31, 2020

Fair Values of Assets

Fair Values of Liabilities

In Thousands
Level 1

Level 2

Level 3

Total

Level 1

Level 2

Level 3

Total

Other items reported at fair value:

Short-term investments
$
11,698

$
—

$
—

$
11,698

$
—

$
—

$
—

$
—

Commodity derivative contracts

467

—

—

467

—

—

—

—

Total
$
12,165

$
—

$
—

$
12,165

$
—

$
—

$
—

$
—

The Company estimates the fair value of each Common Warrant as of the date of issuance and at the end of every fiscal period using a Black-Scholes option pricing model, which requires it to make predictive assumptions regarding future stock price volatility and dividend yield. The Company estimates the risk-free interest rate based on the United States Treasury

zero-coupon

yield curve for the remaining life of the Common Warrant. The Company estimates its future stock price volatility using its historical volatility over the remaining life of the Common Warrant. The Company does not pay dividends and does not expect to pay dividends in the foreseeable future.

- 9 -

The estimated fair values of the Common Warrants, and the assumptions used for the Black-Scholes option pricing model were as follows:


	As of March 31,
	2022

Estimated fair value of Common Warrants	$	0.64
Assumptions:
Risk-free interest rate		2.5	%
Expected volatility		80.0	%
Expected term to liquidation (in years)		5.4

As of March 31, 2022, the Company had 0 other financial instruments measured at fair value.

The

non-current

portion of ~~our~~the Company’s financing lease obligations are also considered a financial instrument, which ~~we measure~~the Company measures at fair value for disclosure purposes. It is a Level 2 liability and had a fair value of ~~$15.1~~$0.1 million as of March 31, ~~2021,~~2022, and a fair value of ~~$15.2~~$14.5 million as of December 31, ~~2020.~~

~~The composition of our short-term investments as of March 31, 2021, and December 31, 2020 were as follows:~~

2021.

As of March 31,

As of December 31,

In Thousands
2021

2020

Corporate debt securities
$
3,045

$
11,698

~~Commodity Price Risk~~

We enter into seed and grain production agreements with settlement values based on commodity futures market prices (Forward Purchase Contracts). These Forward Purchase Contracts allow the counterparty to fix their sales prices at various times as defined in the contract. Because we intend to take physical delivery under the Forward Purchase Contracts, we have grain inventory we will need to sell. We intend to sell these inventories at then-current market prices. As a result, when the Forward Purchase Contract counterparty fixes their grain prices, we enter hedging arrangements by selling futures contracts which converts our exposure to these fixed prices to floating prices. We expect to maintain these hedging relationships until such grain inventory is sold to help stabilize our margins. We do not account for these economic hedges as accounting hedges. We expect any gains or losses from these hedging arrangements to be offset by gains or losses on the grain inventories when such grain inventories are sold.As of March 31, 2021, we have $3.0 million of unrealized commodity derivative losses from hedging contracts sold to convert our fixed price grain inventories and fixed price Forward Purchase Contracts to floating prices. As of March 31, 2021, we held commodity contracts with a notional amount of $10.4 million.

We previously designated all our commodity derivative contracts as cash flow hedges based on the nature of our business activities under the prior go-to-market strategy. As a result, all gains or losses associated with recording those commodity derivative contracts at fair value were recorded as a component of accumulated other comprehensive income (loss) (AOCI). We reclassify amounts from AOCI to cost of goods sold when we sell the underlying products to which those hedges relate. ~~For the three months ended March 31, 2020, we reclassified an immaterial amount from AOCI to cost of goods sold, and there were no such reclassifications in the same period in 2021.~~

Foreign Exchange Risk

Foreign currency fluctuations affect ~~our~~the Company’s foreign currency cash flows related primarily to payments to Cellectis. ~~Our~~The Company’s principal foreign currency exposure is to the euro. ~~We do~~The Company does not hedge these exposures, and ~~we do~~it does not believe that the current level of foreign currency risk is significant to ~~our~~its operations.

~~- 9 -~~

~~Table of Contents~~

Concentrations of Credit Risk

~~We invest our~~

The Company invests its cash, cash equivalents, and restricted cash in highly liquid securities and investment funds. ~~We diversify this~~The Company diversifies the risk associated with investing in securities by allocating ~~our~~its investments to a diverse portfolio of short-dated, high investment-grade securities, ~~we classify~~which it classifies as short-term investments that are recorded at fair value in ~~our~~its consolidated financial statements. ~~We ensure~~The Company maintains the credit risk in this portfolio is in accordance with ~~our~~its internal policies and if necessary, ~~make~~makes changes to investments to ~~ensure~~minimize credit ~~risk is minimized. We have~~risk. The Company has not experienced any counterparty credit losses.

3. As of March 31, 2022, the Company did not hold any short-term investments.

4. RELATED-PARTY TRANSACTIONS

~~We have~~

The Company is party to several agreements that govern ~~our~~its relationship with Cellectis, some of which require usthe Company to make payments to Cellectis. Pursuant to ~~our~~the Company’s management services agreement with Cellectis, weit incurred ~~nominal~~no management fee expensesfor the three months ended March 31, ~~2021~~2022, and it incurred nominal management fee expenses for the three months ended March 31, ~~2020.~~

2021.

Cellectis has also guaranteed the lease agreement for ~~our~~the Company’s headquarters. Cellectis’ guarantee of ~~our~~the Company’s obligations under the lease will terminate at the end of the second consecutive calendar year in which ~~our~~the Company’s tangible net worth exceeds $300 million.

At a point when Cellectis owns 50 percent or less of the Company’s outstanding common stock, the Company has agreed to indemnify Cellectis for any obligations incurred by Cellectis under its guaranty of the obligations under the lease.

TALEN^{®
is ourthe Company’s primary gene editing technology, and it is the foundation of our technology platform.technology. TALEN^{®
technology was invented by researchers at the University of Minnesota and Iowa State University and exclusively licensed to Cellectis. WeThe Company obtained an exclusive license for the TALEN^{®
technology for commercial use in plants from Cellectis. WeThe Company also licenselicenses other technology from Cellectis. We owe Cellectis is entitled to royalties on any revenue we generatethe Company generates from sales of products less certain amounts as defined in the license agreement, as well asroyalties on certain cumulative revenue thresholds, and a percentage of any sublicense revenues. We haveThe Company has incurred nominal license and royalty fees for the three months ended March 31, 20212022, and March 31, 2020.
We2021.}}}

5. STOCKHOLDERS’ EQUITY

Follow-On

Public Offering

On February 23, 2022, the Company completed the

Follow-On

Offering, in which it issued 3,880,000 shares of its common stock,

Pre-Funded

Warrants to purchase up to 3,880,000 shares of its common stock, and Common Warrants to purchase up to 7,760,000 shares of its common stock. The aggregate offering price for each share of common stock and accompanying Common Warrant was $1.41. The aggregate offering price for each Pre

-F

unded Warrant and accompanying Common Warrant was $1.4099. In the aggregate, the Company received net proceeds of $10.0 million, after deducting approximately $0.9 million of underwriting discounts and estimated other offering expenses.

- 10 -

Pre-Funded

Warrants

Each

Pre-Funded

Warrant entitles the holder to purchase one share of the Company’s common stock at an exercise price of $0.0001 per share. The

Pre-Funded

Warrants have ~~entered into various agreements~~no expiration and were recorded as a component of stockholders’ equity within additional

paid-in

capital. Per the terms of the

Pre-Funded

Warrants, the holder of an outstanding

Pre-Funded

Warrant is not entitled to exercise any portion of such warrant if, upon exercise of such portion of the warrant, the holder’s ownership of the Company’s common stock (together with its affiliates) or the ~~University~~combined voting power of ~~Minnesota, pursuant~~the Company’s securities beneficially owned by such holder (together with its affiliates) would exceed 9.99

percent after giving effect to ~~which we have been granted both exclusive~~ the exercise. On May 4, 2022, the Company received a notice of exercise with respect to the full exercise of all outstanding Pre-Funded Warrants.

Common Stock Warrants

Each Common Warrant entitles the holder to purchase one share of common stock at an exercise price of $1.41 per share. The Common Warrants will be exercisable beginning August 23, 2022

and ~~non-exclusive license agreements that carry annual license fees, milestone payments, royalties, and associated legal fees. These agreements primarily relate~~expire on August 23, 2027. The Common Warrants are recorded as a liability in the Company’s consolidated balance sheet. Per the terms of the Common Warrants, a holder of an outstanding warrant is not entitled to ~~gene-editing tools, enabling technologies and germplasm. We incurred nominal expenses pursuant~~exercise any portion of such warrant if, upon exercise of such portion of the warrant, the holder’s ownership of the Company’s common stock (together with its affiliates) or the combined voting power of the Company’s securities beneficially owned by such holder (together with its affiliates) would exceed the 4.99 percent after giving effect to ~~these agreements~~the exercise.

Warrant transactions for the three months ended March 31, 2022, are as follows:


	Number of Pre-Funded Warrants		Weighted Average Exercise Price		Number of Common Warrants		Weighted Average Exercise Price

Outstanding as of December 31, 2021:
Issued		3,880,000	$	0.0001		7,760,000	$	1.41
Forfeited/canceled		—				—
Exercised		—				—

Outstanding as of March 31, 2022:		3,880,000	$	0.0001		7,760,000	$	1.41

Exercisable as of March 31, 2022:		3,880,000	$	0.0001		—		—

ATM Facility

On September 21, 2021, the Company entered into an ATM Facility with Jefferies LLC who is acting as sole selling agent. Under the terms of the ATM Facility, the Company may, from

time-to-time,

issue common stock having an aggregate offering value of up to $50.0 million. At its discretion, the Company determines the timing and number of shares to be issued under the ATM Facility. During the three-month period ended March 31, ~~2020.~~

4.2022, the Company did not issue any shares of common stock under the ATM Facility.

6. STOCK-BASED COMPENSATION

~~We use~~

The Company uses broad-based stock plans to attract and retain highly qualified officers and employees and to help ensure that management’s interests are aligned with those of ~~our~~its shareholders. ~~We have~~The Company has also granted equity-based awards to directors, nonemployees, and certain employees of Cellectis.

In December 2014, wethe Company adopted the Calyxt, Inc. Equity Incentive Plan (2014 Plan), which allowed for the grant of stock options, and in June 2017, weit adopted the 2017 Omnibus Plan (2017 Plan), which allowed for the grant of stock options, restricted stock units, performance stock units and other types of equity awards.

In July 2021, the Company also adopted the Calyxt, Inc. Employee Inducement Incentive Plan (the Inducement Plan), from which PSUs were granted to Michael A. Carr.

On February 19, 2021, James Blome ceased serving as ~~our~~the Company’s Chief Executive Officer. WeIn the three-month period ended March 31, 2021, the Company recorded a benefit to earnings from a $2.5 million recapture of

non-cash

stock compensation expense from the forfeiture of ~~certain of~~ Mr. Blome’s unvested stock options, ~~restricted stock units,~~RSUs, and ~~performance stock units.~~

PSUs.

- 11 -

Table of Contents

As of March 31, ~~2021, 1,902,128~~2022, 2,818,058 shares were registered and available for grant under effective registration statements, while ~~6,202,032~~3,013,121 shares were available for grant in the form of stock options, restricted stock, restricted stock units, and performance stock units under the 2017 Plan. Stock-based awards currently outstanding also include awards granted under the 2014 Plan ~~under which no~~and the Inducement Plan. No further awards will be ~~granted.~~

granted under either the 2014 Plan or the Inducement Plan.

Stock Options

The estimated fair values of stock options granted, and the assumptions used for the Black-Scholes option pricing model were as follows:

Three Months Ended March 31,

2021

2020

Estimated fair values of stock options granted
$
5.85

$
5.19

Assumptions:

Risk-free interest rate

0.6
%

1.7
%
Expected volatility

85.0
%

77.4
%
Expected term (in years)
5.7 - 6.2

6.9

~~- 10 -~~

~~Table of Contents~~

~~We estimate~~


	Three Months Ended March 31,
	2022			2021

Estimated fair values of stock options granted	$	0.97		$	5.85
Assumptions:
Risk-free interest rate		1.9% - 2.4	%		0.6% - 1.1	%
Expected volatility		89.7% - 91.8	%		85.0% - 87.6	%
Expected term (in years)		5.75 - 6.89			5.7 - 6.2

The Company estimates the fair value of each stock option on the grant date, or other measurement ~~dates~~date if applicable, using a Black-Scholes ~~option-pricing~~option pricing model, which requires usit to make predictive assumptions regarding employee exercise behavior, future stock price volatility, and dividend yield. Our expected term represents the period that options granted are expected to be outstanding determined using the simplified method. We estimate our future stock price volatility using the historical volatility of comparable public companies over the expected term of the option. We estimateThe Company estimates the risk-free interest rate based on the United States Treasury

zero-coupon

yield curve at the date of grant for the expected term of the option. ~~We do 0t nor do we~~The Company estimates its future stock price volatility using the weighted-average historical volatility calculated from a group of comparable public companies over the expected term of the option. The expected term of stock options is estimated using the average of the vesting tranches and the contractual life of each grant for employee options, or the simplified method, as the Company has limited historical information to develop reasonable expectations about future exercise patterns and post-vesting employment termination behavior for its stock option grants. The use of the simplified method is dependent upon the type of equity award granted and the term of the award. The Company does not pay dividends and does not expect to pay ~~dividends.~~

dividends in the foreseeable future.

Option strike prices are set at 100 percent or more of the closing share price on the date of grant and generally vest over three to six years following the grant date. Options generally expire 10 years after the date of grant.

Information on stock option activity is as follows:

Options
Exercisable

Weighted-
Average
Exercise
Price Per
Share

Options
Outstanding

Weighted-
Average
Exercise
Price Per
Share

Balance as of December 31, 2020

2,347,663

$
10.15

4,621,173

$
10.30

Granted

270,800

8.07

Exercised

(56,372
)

3.71

Forfeited or expired

(456,450
)

10.03

Balance as of March 31, 2021

2,369,997

$
10.38

4,379,151

$
10.27


	Options Exercisable		Weighted- Average Exercise Price Per Share		Options Outstanding			Weighted- Average Exercise Price Per Share

Balance as of December 31, 2021		2,789,110	$	10.23		4,658,405		$	9.47
Granted						1,346,000			1.27
Exercised						—			—
Forfeited or expired						(234,061	)		7.30

Balance as of March 31, 2022		2,948,076	$	10.26		5,770,344		$	7.65

Stock-based compensation expense related to stock option awards is as follows:

Three Months Ended March 31,

In Thousands
2021

2020

Stock-based compensation expense
$
(396
)

$
1,006


	Three Months Ended March 31,
In Thousands	2022		2021
Stock-based compensation expense	$	180	$	(396	)

As of March 31, ~~2021,~~2022, options outstanding and exercisable had an0 aggregate intrinsic value ~~of $2.2 million~~ and the weighted average remaining contractual term was ~~6.0 years.~~

5.5 years as of that date.

Net cash proceeds from the exercise of stock options less shares used for minimum withholding taxes and the intrinsic value of options exercised were as follows:

Three Months Ended March 31,

In Thousands
2021

2020

Net cash proceeds
$
208

$
—

Intrinsic value of options exercised
$
331

$
—

- 12 -

Table of Contents


	Three Months Ended March 31,
In Thousands	2022		2021
Net cash proceeds	$	0	$	208

Intrinsic value of options exercised	$	0	$	331

As of March 31, ~~2021,~~2022, unrecognized compensation expense related to

non-vested

stock options was ~~$6.9~~$5.2 million. This expense will be recognized over 3027 months on average.

Restricted Stock Units

~~Units settled in stock subject to a~~

The Company grants restricted ~~period may be granted under the 2017 Plan. Restricted~~ stock units which generally vest ~~and become unrestricted~~ over three to five years after the date of grant.

~~- 11 -~~

~~Table of Contents~~

Information on restricted stock unit activity is as follows:

Number of
Restricted Stock
Units Outstanding

Weighted-
Average Grant
Date Fair Value

Unvested balance at December 31, 2020

547,807

$
9.49

Granted

68,000

8.05

Vested

(27,386
)

9.18

Forfeited

(126,178
)

12.89

Unvested balance at March 31, 2021

462,243

$
8.37


	Number of Restricted Stock Units Outstanding			Weighted- Average Grant Date Fair Value
Unvested balance as of December 31, 2021		571,303		$	6.15
Granted		1,048,800			1.27
Vested		(87,472	)		7.06
Forfeited		(61,613	)		5.55

Unvested balance as of March 31, 2022		1,471,018		$	2.64

The total grant-date fair value of restricted stock unit awards that vested is as follows:

Three Months Ended March 31,

In Thousands
2021

2020

Grant-date fair value
$
251

$
510


	Three Months Ended March 31,
In Thousands	2022		2021
Grant-date fair value	$	617	$	251

Stock-based compensation expense related to restricted stock units is as follows:

Three Months Ended March 31,

In Thousands
2021

2020

Stock-based compensation expense
$
(749
)

$
155


	Three Months Ended March 31,
In Thousands	2022		2021
Stock-based compensation expense	$	205	$	(749	)

As of March 31, ~~2021,~~2022, unrecognized compensation expense related to restricted stock units was ~~$1.7~~$2.5 million. This expense will be recognized over 2729 months on average.

~~We treat~~

The Company accounts for stock-based compensation awards granted to employees of Cellectis as deemed dividends. WeThe Company recorded deemed dividends as follows:

Three Months Ended March 31,

In Thousands
2021

2020

Deemed dividends from grants to Cellectis employees
$
79

$
224


	Three Months Ended March 31,
In Thousands	2022		2021
Deemed dividends from grants to Cellectis employees	$	37	$	79

Performance Stock Units

In ~~June 2019, we~~March 2022, the Company granted ~~311,667 performance stock units~~530,000 PSUs under the 2017 Plan to ~~three~~five employees including four executive officers.The PSUs include three annual performance ~~stock units will vest at 50%, 100% or 120%~~periods (2022, 2023, and 2024) and target performance levels for each of those periods linked to the achievement of Company objectives as determined annually for the respective period by the Compensation Committee of the ~~shares under the award at the end~~Company’s Board of a ~~three-year~~ ~~performance period based upon increases in the value of our common stock from the grant price of $12.48. The performance stock units~~Directors (the Compensation Committee). Earned awards will be settled in ~~restricted~~shares of Company stock ~~upon vesting, with restrictions~~no later than March 15 of the following year. The grant date for the tranche of awards linked to 2022 performance, which triggers the determination of the aggregate amount of expense for each tranche of PSUs awarded,

is May 4, 2022

. Once the objectives are approved, the associated expense will be recognized on ~~transfer lapsing~~a straight-line basis over the period from the date of grant through the March 15 determination date. Determination of expense for the 2023 and 2024 tranches of PSUs will be made when the associated business objectives are determined.

- 13 -

In July 2021, the Company granted 600,000 PSUs under the Inducement Plan to Mr. Carr. The PSUs will vest if the Company’s stock remains above three specified price levels for 30 calendar days over the three-year performance period. The PSUs will be settled in unrestricted shares of the Company’s common stock on the ~~second anniversary of the restricted stock issuance~~vesting date. ~~During the three months ended March 31, 2021, we recognized a benefit from the forfeiture of 166,667 performance stock units held by Mr. Blome, our former chief executive officer.~~

Stock-based compensation expense related to ~~performance stock units~~PSUs is as follows:

Three Months Ended March 31,

In Thousands
2021

2020

Stock-based compensation expense
$
(305
)

$
110


	Three Months Ended March 31,
In Thousands	2022		2021
Stock-based compensation expense	$	146	$	(305	)

As of March 31, ~~2021,~~2022, unrecognized compensation expense related to ~~performance stock units~~PSUs was ~~$0.7~~$1.4 million. This expense will be recognized over 3928 months on average.

7. INCOME TAXES

~~We provide~~

The Company provides for a valuation allowance when it is more likely than not that weit will not realize a portion of the deferred tax assets. ~~We have~~The Company has established a full valuation allowance for deferred tax assets due to the uncertainty that enough taxable income will be generated in the taxing jurisdiction to utilize the assets. Therefore, ~~we have~~the Company has not reflected any benefit of such deferred tax assets in the accompanying consolidated financial statements.

~~- 12 -~~

~~Table of Contents~~

As of March 31, ~~2021,~~2022, there were no material changes to what wethe Company disclosed regarding tax uncertainties or penalties as of December 31, ~~2020.~~

6.2021.

8. LEASES, ~~OTHER~~ COMMITMENTS, AND CONTINGENCIES

~~Litigation~~

Leases

In February 2016, the FASB issued ASU No.

2016-02, Leases

(Topic 842) and ~~Claims~~

Wein July 2018, ASU

No. 2018-10,

Codification Improvements to Topic 842, Leases, and ASU

2018-11, Leases (Topic

842) – Targeted Improvements (collectively, the Standard). As discussed in Note 1, the Company adopted the Standard on January 1, 2022.

The Company’s leases are ~~not currently a party to any material pending legal proceeding.~~

~~Leases~~

Wesummarized as follows:

A lease ~~our~~for its headquarters ~~facility, office equipment,~~ and ~~other items. Our headquarters~~laboratory facilities in Roseville, MN which encompasses approximately 38,000 square feet. The original lease ~~involved~~term was 20 years, and the ~~sale of land and improvements to a third party who then constructed the facility. This~~Company holds four 5-year renewal options. Historically, this lease iswas considered a ~~financing~~failed sale leaseback based on the nature of the transactions and was reported as a financing-type lease.

~~We also have an~~

An equipment financing arrangement that is considered a ~~financing~~financing-type lease. This arrangement has a term of four years for each draw. ~~We were~~The Company was required to deposit cash into a restricted account in an amount equal to the future rent payments required by the lease. As of March 31, ~~2021,~~2022, restricted cash totaled ~~$1.0~~$0.6 million. ~~We have~~The Company has the option to request the return of excess collateral annually in December, and the amount ~~we expect~~the Company expects to receive is reflected as a current asset.

A small number of short-term and immaterial leases for office equipment.

The Company’s adoption of the Standard required it to remove its existing land, buildings, and equipment associated with its headquarters lease as well as the associated liability. The Company assessed the elements of its lease agreement and upon adoption, recorded an operating lease associated with the sale leaseback of land underlying the headquarter facility, and a second operating lease associated with the building. The cumulative effect of the adoption of the Standard was recorded to stockholders’ equity.

The impact of adoption on the Company’s December 31, 2021, consolidated balance sheet was as

follows:


	As Reported December 31, 2021			Adoption of Lease Standard			As Adjusted December 31, 2021
Assets
Land, buildings, and equipment	$	21,731		$	(16,543	)	$	5,188
Operating lease right-of-use assets		0			14,090			14,090

	$	21,731		$	(2,453	)	$	19,278

Liabilities and stockholders’ equity
Current portion of financing lease obligations	$	370		$	(4	)	$	366
Other current liabilities		191			276			467
Financing lease obligations		17,506			(17,371	)		135
Operating lease obligations		0			13,814			13,814
Accumulated deficit		(196,092	)		832			(195,260	)

	$	(178,025	)	$	(2,453	)	$	(180,478	)

The Company records its operating lease liabilities at the present value of the future lease payments over the lease term. If the lease term includes options to extend or terminate the lease, those elements are included in the determination of lease term when it is reasonably certain that the option will be exercised. The rate used to determine the present value of future lease payments is the rate stated in the lease agreement, or if not stated, the Company’s incremental borrowing rate is used, up to an effective rate that enables the lease liability to amortize to zero over the lease term. Rent expense ~~from~~for operating leases is recorded in selling, general, and administrative

(SG&A)

expense in the consolidated statements of operations and in operating cash flows in the consolidated statements of cash flows. The Company also records operating lease right-of-use assets at an initial amount equal to the operating lease liability. Those right-of-use assets are amortized to lease expense within SG&A over the lease term using the effective interest method to ensure the right-of-use asset amortizes to zero concurrent with the associated liability, and the right-of-use asset amortization expense is also reported in operating cash flows in the consolidated statements of cash flows.

The Company records its financing lease liabilities at the present value of the future lease payments over the lease term. If the lease term includes options to extend or terminate the lease, those elements are included in the determination of lease term when it is reasonably certain that the option will be exercised. The rate used to determine the present value of future lease payments is the rate stated in the lease agreement, or if not stated, the Company’s incremental borrowing rate is used, up to an effective rate that enables the lease liability to amortize to zero over the lease term. Expense associated with financing leases is recorded in interest, net in the consolidated statements of operations and in operating cash flows in the consolidated statements of cash flows.

The Company is obligated under

non-cancellable

operating leases, primarily for office space and certain equipment, as follows:

- 14 -


	March 31, 2022
	Remaining		Right-of-Use
In Thousands	Term (years)		Asset
Roseville, MN lease		16.1	$	13,969

Total			$	13,969

The Roseville, M

lease includes four options to each extend the lease for

5 years

These options to extend the lease are not recognized as part of the

right-of-use

assets and operating lease liabilities as it is not reasonably certain that the Company will exercise those options. The Company’s agreement does not include options to terminate the lease.

The components of lease expense were as follows:


In Thousands	Three Months Ended March 31, 2022
Finance lease costs	$	9
Operating lease costs		399
Variable lease costs		231

Total	$	639

Operating lease cost for short-term leases was not material for the three months ended March 31, 2022.

Other information related to leases was as follows:

Three Months Ended March 31,

In Thousands
2021

2020

Rent expense from operating leases
$
13

$
24

~~Other Commitments~~


In Thousands except for lease term and discount rate	As of and for Three Months Ended March 31,
	Operating			Financing
Cash paid for amounts included in the measurement of lease liabilities:
Operating cash flows	$	67		$	0
Financing cash flows	$	0		$	94
Weighted average remaining lease term (years)		16.1			0.9
Weighted average discount rate		7.9	%		8.1	%

- 15 -

As of March 31, ~~2021, we have noncancelable commitments to purchase grain~~2022, future minimum payments under operating and ~~seed from growers at dates throughout 2021 aggregating $11.7 million based on current commodity futures market prices, other payments to growers,~~finance leases were as follows:


In Thousands	Operating			Financing			Total
Remainder of 2022	$	1,034		$	231		$	1,265
2023		1,446			99			1,545
2024		1,480			0			1,480
2025		1,479			0			1,479
2026		1,479			0			1,479
2027		1,479			0			1,479
Thereafter		16,991			0			16,991

		25,388			330			25,718
Less: imputed interest		(11,365	)		(15	)		(11,380	)

Total	$	14,023		$	315		$	14,338

Litigation and ~~estimated yields per acre. This commitment~~Claims

The Company is not ~~recorded in the consolidated financial statements because we have not taken delivery~~currently a party to any material pending legal proceeding.

9. SUPPLEMENTAL INFORMATION

Certain statement of ~~the seed or grain~~operations amounts are as follows:


	Three Months Ended March 31,
In Thousands	2022		2021
Stock-based compensation expense:
Research and development	$	30	$	392
Selling, general, and administrative		501		(1,842	)

Total	$	531	$	(1,450	)


	Three Months Ended March 31,
In Thousands	2022			2021
Interest, net:
Interest expense	$	(10	)	$	(360	)
Interest income		1			14
Common stock warrants - financing costs amortization		(8	)		0

Total	$	(17	)	$	(346	)

- 16 -

Certain balance sheet amounts are as follows:

As of March 31,

As of December 31,

In Thousands
2021

2020

Accounts Receivable:

Accounts receivable
$
1,107

$
4,317

Receivables from growers

247

570

Allowance for doubtful accounts

—

—

Total
$
1,354

$
4,887

We carry receivables related to amounts we are owed by growers from their purchases of seed. These amounts reduce the cost of the grain we ultimately purchase from the grower and are repaid either on current terms or on an extended payment basis. If a grower has elected extended payment terms, they will pay a higher price per unit and grant us the right to deduct the amount we are owed from the payment we make upon the purchase of their grain. As of March 31, 2021 and December 31, 2020 all of the receivables from growers were on extended payment terms.

~~Certain statements of operations amounts are as follows:~~

Three Months Ended March 31,

In Thousands
2021

2020

Stock compensation expense:

Research and development
$
392

$
319

Selling, general, and administrative

(1,842
)

952

Total
$
(1,450
)

$
1,271

~~- 13 -~~

~~Table of Contents~~


In Thousands	As of March 31, 2022		As of December 31, 2021
Cash, cash equivalents, and restricted cash:
Cash and cash equivalents	$	17,285	$	13,823
Restricted cash		499		499
Non-current restricted cash		99		99

Total	$	17,883	$	14,421

Three Months Ended March 31,

In Thousands
2021

2020

Interest, net:

Interest expense
$
(360
)

$
(372
)
Interest income

14

(26
)
Total
$
(346
)

$
(398
)

~~Certain statements~~

Supplemental statement of cash flows ~~amounts are~~information is as follows:

As of March 31,

In Thousands
2021

2020

Cash, cash equivalents, restricted cash, and short-term investments:

Cash and cash equivalents
$
16,386

$
7,385

Restricted cash

393

388

Non-current restricted cash

597

1,045

Total cash, cash equivalents, and restricted cash

17,376

8,818

Short-term investments

3,045

38,620

Total
$
20,421

$
47,438

8~~. SEGMENT INFORMATION~~

~~We operate in a~~ ~~single~~ reportable segment, agricultural products. Our current commercial focus is North America. Our major product categories are high oleic soybean seed, grain, oil, and meal. In the three months ended March 31, 2021 we only sold grain. In the three months ended March 31, 2020, we only sold oil and meal.

~~9. LONG-TERM DEBT~~

Our long-term debt is comprised of a $1.5 million promissory note pursuant to the Paycheck Protection Program (the Paycheck Protection Program loan) established by the Coronavirus Aid, Relief, and Economic Security Act (the CARES Act) implemented by the U.S. Small Business Administration (SBA). We received the funds under the Paycheck Protection Program loan on April 19, 2020. The Paycheck Protection Program loan matures in April 2022 and bears interest at a per annum rate of 1 percent. The Paycheck Protection Program loan may be prepaid at any time prior to maturity with 0 prepayment penalties. ~~The Paycheck Protection Program loan contains customary events of default relating to, among other things, payment defaults and breaches of representations and~~ warranties. Subject to certain conditions, the Paycheck Protection Program loan and accrued interest may be forgiven in whole or in part by applying for forgiveness pursuant to the CARES Act and the Paycheck Protection Program. In order to be eligible for forgiveness, the proceeds of the Paycheck Protection Program loan must be applied to certain eligible expenses, including payroll costs, interest on certain mortgage obligations, rent payments on certain leases, and certain qualified utility payments, with


	As of March 31,
In Thousands	2022		2021
Interest paid	$	8	$	359

Non-cash

transactions not ~~more than 40 percent of the amount applied to non-payroll costs.~~

We have applied the proceeds from the Paycheck Protection Program loan toward qualifying expenses. On October 21, 2020, as modified December 29, 2020, we applied for forgiveness of the full principal amount and all accrued interest, and o~~n April 8, 2021, we were notified by the SBA that the full amount of our Paycheck Protection Program loan had been forgiven. We expect to record income~~reported in the ~~second quarter~~consolidated statement of ~~2021 for the full amount of the loan and the associated accrued interest.~~

cash flows is as follows:


	As of March 31,
In Thousands	2022			2021
Receivable from Jefferies for shares issued under ATM facility	$	(260	)	$	0
Non-cash additions to land, buildings, and equipment	$	(202	)	$	0
Unpaid stock offering costs included in stockholders’ equity	$	257		$	0
Cumulative effect of adoption of lease accounting standard on stockholders’ equity	$	832		$	0
Establishment of operating lease right-of-use assets and associated operating lease liabilities	$	14,090		$	—

- 1417 -

Item 2. Management’s Discussion and Analysis of Financial Condition and Results of Operations

The following discussion and analysis of ~~our~~the Company’s financial condition and results of operations should be read together with ~~our~~its consolidated financial statements and related notes, which are included elsewhere in this Quarterly Report on Form

10-Q

and with ~~our 2020~~its Annual Report on Form

10-K

for the year ended December 31, 2021, including the Consolidated Financial Statements and Notes incorporated therein.

EXECUTIVE OVERVIEW

~~We are~~

Calyxt is a plant-based synthetic biology company. The Company currently leverages its proprietary PlantSpring

™

technology ~~company focused on delivering plant-based innovations~~platform to engineer plant metabolism to produce innovative, high-value, and ~~solutions with substantial disruption potential across multiple industries. We are a leader in gene editing with exclusive access to proprietary TALEN~~^® ~~technology~~sustainable materials and products for use in ~~plants, which we used~~helping customers meet their sustainability targets and financial goals. The Company’s primary focus and commercialization strategy is on engineering synthetic biology solutions through its PlantSpring platform for manufacture using its proprietary and differentiated BioFactory

™

production system for a diverse base of target customers across an expanded group of end markets including the cosmeceutical, nutraceutical, and pharmaceutical industries. The Company also intends to ~~successfully~~ commercialize the first gene edited food product in the United States. We have a robust development pipeline that spans multiple crops and that is focused on several important trends, including functional nutrition, regenerative agriculture, sustainability, plant-based protein, animal nutrition, and industrial uses.

~~Our capital-efficient business model comprises three differentiated go-to-market strategies, as follows:~~

•	~~Trait Development and Licensing Arrangements~~: Through development and licensing agreements with downstream partners with respect to traits we develop in exchange for negotiated upfront, milestone, or annual payments and potential royalties upon the licensees’ commercial sale of products.

•	~~Seed Sale Arrangements: Through agreements for traited seed we have produced.~~

•	~~Technology Licensing Arrangements: Through technology licensing agreements with third parties in exchange for negotiated upfront and annual payments, and potential royalties upon the licensees’ commercial sale of products.~~

~~While we will opportunistically engage in arrangements under each of these strategies, we have determined to pursue trait development and~~its PlantSpring technology platform by licensing ~~arrangements with respect to all~~elements of the ~~products currently under development.~~

~~For technology~~platform and trait licensing arrangements, we expect that our customers will primarily be seed companies, biotechnology companies, germplasm providers, large agricultural processors, others in the relevant crop’s supply chain, and growers, who would, in each case, utilize our technology for their own trait development in specified crops. We will seek to develop relationships with strategic customers where ourhistorically developed traditional agriculture seed-trait product candidates, are most likely to benefit from the counterparty’s deep agronomy, product management, and commercialization expertise. Placing our products and traits with such strategic customers will reduce our expenses and downstream risk exposure, while allowing us to pursue diversified growth across multiple revenue streams.

We believe that our primary focus on trait development and licensing provides a capital-efficient, lower-cost, and highly scalable approach. Our strategy is based on focusing on our core strengths in research and development, including gene editing, plant breeding, and trait development. We will continue to focus on advancing our technologies towardas well as selectively developing high value innovations and plant-based solutions with substantial disruption potential, while leveraging our partners and licensees to manage commercialization and the associated costs and risks. We believe that focusing our efforts on our technology and trait development expertise, while contracting with commercialization partners or licensees for downstream execution strikes a balance where we are best positioned for cost-efficient paths to market.

We are currently exploring product and partnership opportunities in various crops for potential applications across a variety of industries, including food, nutraceuticals, energy, and agriculture. Focusing primarily on our trait development and licensing go-to-market strategies, we are well positioned to nimbly develop plant-based input solutions for specific downstream issues, including consumer preferences, sustainability, cost, quality, and regulatory compliance. As of the date of this report, we have eight projects in later stage development, including two in Phase 3.

~~- 15 -~~

~~Table of Contents~~

~~A summary of our product development as of March 31, 2021 is as follows:~~

~~PRODUCT~~¹	~~DEVELOPMENT PHASE~~	~~CROP~~	~~TARGET COMMERCIAL PLANTING YEAR~~
~~Improved Digestibility~~	~~Phase 3~~	~~Alfalfa~~	~~2021~~
~~High Fiber~~	~~Phase 3~~	~~Wheat~~	~~2023~~
~~High Oleic, Low Linolenic (HOLL)~~	~~Phase 2~~	~~Soybean~~	~~2023~~
~~Marketable Yield~~	~~Phase 1~~	~~Hemp~~	~~2023~~
~~Low THC for Food, Fiber, & Nutraceutical~~	~~Phase 1~~	~~Hemp~~	~~2024~~
~~Winter (Cold Tolerant)~~	~~Phase 1~~	~~Oat~~	~~2026~~
~~High Saturated Fat~~	~~Phase 1~~	~~Soybean~~	~~2026~~
~~Enhanced Protein Flavor~~	~~Phase 1~~	~~Soybean~~	~~2027~~

¹~~The agronomic and functional quality of our~~ product candidates ~~and the timing of development are subject to a variety of factors and risks, which are described~~for customers in ~~Part I, Item 1A, “Risk Factors” of our 2020 Form 10-K.~~

During the quarter we stopped development of our improved oil HOLL product, which was being developed with a target of higher HOLL oil content that was intended to reduce costs per pound of oil under our prior go-to-market strategy. During the quarter, we also determined to pursue trait development and licensing arrangements as our baseline go-to-market strategy. While we will opportunistically engage in seed sale arrangements, our intentiontraditional agriculture.

The Company is to license all products under development as traits. We intend to move our current high oleic soybean product to this go-to-market strategy in 2022 and we are currently in discussions with potential licensors. This transition further reduces our capital requirements for these products and is expected to deliver high margin royalty revenue streams when those traits are commercialized by the licensors in future years.

~~Select Recent Achievements and Developments:~~

•

Completed preliminary composition analysis of our next generation soybean product’s fatty acid profile. We intend to partner with third parties to bring this product to market as an alternative to other premium oilseeds.

•

Achieved the successful completion of transformation of the hemp genome. The ability to transform hemp will enable further advancements, including trait delivery, gene editing, and advanced plant breeding, and is expected to accelerate hemp variety development.

•

~~Executed new seed sale agreement with an affiliate of a current grain customer, a continuation of the relationship established through their purchases of grain.~~

•

~~Sold more than 50 percent of the 2020 grain crop to Archers Daniels Midland (ADM), with the remaining grain projected to be sold throughout 2021 under existing contracts.~~

•

Promoted Sarah Reiter to Chief Business Officer, effective May 1, 2021. In this role Ms. Reiter will be responsible for all our commercial activities including finding partners for the development and commercialization of our traits and products, and she will also be responsible for communications activities, including corporate communications, public relations, and product marketing.

•

Appointed world-renowned plant-biochemistry experts to new Scientific Advisory Board chaired by our Co-Founder Dan Voytas, Ph.D. Appointees include including Anne Osbourn, Ph.D., Group Leader at the John Innes Center; Elizabeth Sattely, Ph.D., HHMI Investigator and Associate Professor of Chemical Engineering at Stanford University; and Paul Bernasconi, Ph.D., Former Global Function Head for Molecular Biology at BASF Biosciences. The Calyxt Scientific Advisory Board will focus on the identification of high value targets for development and commercialization.

•

On February 19, 2021, James Blome ceased serving as our Chief Executive Officer. Mr. Blome was entitled to compensation and benefits as part of this termination without cause, and in the first quarter of 2021 we recorded $2.3 million of cash expense for separation-related payments as well as an additional non-cash charge of $0.1 million from the acceleration of expense recognition of sign-on bonus paid to Mr. Blome in a prior period. The cash payments to Mr. Blome will be made over a period of 24 months, which began in March 2021. We recorded a benefit to earnings from a $2.5 million recapture of non-cash stock compensation expense from the forfeiture of certain of Mr. Blome’s unvested stock options, restricted stock units, and performance stock units.

~~- 16 -~~

~~Table of Contents~~

~~We are~~ an early-stage company and ~~have~~has incurred net losses since ~~our~~its inception. As of March 31, ~~2021, we~~2022, the Company had an accumulated deficit of ~~$176.9~~$200.9 million. ~~Our~~The Company’s net losses were ~~$10.0~~$5.6 million for the three months ended March 31, ~~2021. We expect~~2022. The Company expects to continue to incur significant expenses and operating losses for the next several years. Those expenses and losses may fluctuate significantly from

quarter-to-quarter

and

year-to-year. ~~We expect~~

The Company expects that ~~our~~its expenses will be primarily driven by:

Research and development (R&D) expenses to continue to enhance the capabilities of its PlantSpring technology platform, including continued investments in artificial intelligence and machine learning (AIML) capabilities;

R&D expenses and capital expenditures to expand its BioFactory production system from laboratory scale through various pilot vessel sizes;

other R&D expenses to further develop traditional agriculture seed-trait product candidates for its licensee customers;

to the extent not reimbursed by its customers, conducting regulatory studies and other associated activities for its current and future products under development;

acquiring or

in-licensing

other products, technologies, germplasm, or other biological material;

maintaining, protecting, expanding, and defending its intellectual property portfolio, including intellectual property related to the PlantSpring technology platform and BioFactory production system;

seeking to attract and retain skilled personnel;

identifying and negotiating agreements with customers, licensees, and infrastructure partners; and

experiencing any delays or encountering issues with any of the above, including due to the

COVID-19

pandemic and its impacts.

BUSINESS UPDATE

In January 2022, the Company announced that its initial pilot BioFactory production system became operational at its headquarters in Minnesota. This development occurred on schedule and marked an important first step toward achieving at-scale commercial production. The Company has completed multiple runs in its pilot BioFactory, focusing on ensuring the system is operating as planned, its Plant Cell Matrix

™

(PCM

™

) structures perform as expected, and that data is being captured properly as it is a driver of future AIML capability. The pilot facility is modular and designed to be able to continuously produce plant-based chemistries while also producing multiple compounds at once. These capabilities are expected to provide the Company with flexibility when producing chemistries for multiple customers at the same time. The Company intends to scale this pilot production to enable full production runs of compounds similar to those demanded for commercial production.

The Company has also begun to deploy additional AIML capabilities to both PlantSpring and the pilot Biofactory. The Company currently uses AIML to assist in the identification of gene targets in the PlantSpring development process. During the past quarter it integrated AIML capabilities into its lab-scale reactors, enabling the continual capture and analysis of data, leading to optimization of performance. The Company intends to advance these lab-scale AIML capabilities into its pilot-scale reactor later this year. This deployment drives future decisions and improves test cycles with the goal of shortening development timelines.

Late last year, the Company reported considerable progress in discovery and development of sustainable plant-based molecules in its BioFactory. Results from its metabolomics analyses indicated more than 15,000 chemical signatures, including both known and as-yet-uncharacterized molecules and building block precursors. These signatures are chemical compounds involved in chemical reactions that produce other compounds. The chemical signatures that have been identified form a baseline library that enables Calyxt to quickly identify and assess customers’ targets with the potential to drive accelerated development timelines. From this library, the Company has, based on interest expressed by potential customers, produced rosemarinic acid, a compound with antioxidant,

anti-inflammatory,

and antimicrobial properties and that is used broadly in cosmeceuticals and nutraceuticals. The Company has also used this baseline library to identify six additional compounds of interest for prospective customers. The Company intends to move the PCM producing rosemarinic acid into the pilot BioFactory to further advance the BioFactory’s capabilities and scale.

Using data it has accumulated from its land-based activities and its lab scale bioreactors, the Company has demonstrated at least a 35-fold increase in yield from land-based production to a lab scale bioreactor. The Company projects a further yield increase as it moves production to pilot scale. Taken together with the land-based to lab results, the further advancement to lab scale could drive an aggregate increase in yield of as much as 130-fold over land-based production yields based on the current scale of the pilot BioFactory. These results underpin the Company’s scalability and sustainability benefits of the BioFactory production system.

Calyxt’s business model for its proprietary PlantSpring technology and the BioFactory is customer demand-driven. During the quarter the Company continued to advance its discussions with potential customers within its target end markets including the cosmeceutical, including personal care and flavors and fragrances, nutraceutical, and pharmaceutical industries. These are three key large end markets with customers that have current business needs to source finite plant-based chemistries. They are also markets known to be fast adopters of innovation that are actively seeking to reduce carbon footprints. For example, based on research from MarketsandMarkets

, Calyxt estimates that the cosmeceutical ingredients market, which also includes personal care and flavors and fragrances, was a spend of more than $60 billion in 2020 and growing at a mid-single digit compound annual growth rate. This market includes large multinational cosmetics brands, regional and specialty brands, and flavor and fragrance houses who manufacture products or provide ingredients for those brands.

Source:

•

~~continuing~~1.

MarketsandMarkets,

Personal Care Ingredients Market – Global Forecast to ~~advance the R&D of our current and future products;~~

2025

•

~~conducting additional breeding and field trials of our current and future products;~~

MarketsandMarkets,

Global Color Cosmetics Market – Forecast Till 2020,

•

~~seeking regulatory and marketing approvals for our products;~~

MarketsandMarkets,

Fragrance Ingredients Market – Global Trends & Forecast to 2019

•

~~acquiring or in-licensing other products, technologies, germplasm, or other biological material;~~

MarketsandMarkets,

Flavors and Fragrance Market – Global Forecast to 2026

•	~~maintaining, protecting, expanding, and defending our intellectual property portfolio;~~

•	~~making royalty and other payments under any in-license agreements;~~

The breadth and depth of the Company’s business development discussions have grown. The Company has evaluated 28 molecules identified by potential customers for development with PlantSpring for production in its Biofactory. That amount does not include another 58 such molecules that did not meet the Company’s target product profile, or TPP, criteria and were not evaluated further. The group of 28 molecules includes several that were identified by the potential customers as having been unsuccessfully attempted by others in the industry. As part of the customer acquisition process, the Company is expecting to produce small quantities of product for evaluation by the customer and as a result, the Company believes the development cycle from contract signing to commercialization may likely be shorter than 36 months.

•	~~seeking to attract and retain new and existing skilled personnel;~~

The Company is targeting two to four customer demand-driven compounds for development within the Design-Engineer-Verify process by year end using its selection criteria to determine the compounds to pursue. The Company uses the term “compounds” to describe compounds, molecules, and plant-based chemistries interchangeably.

•	~~identifying strategic partners and licensees and negotiating agreements under the applicable go-to-market strategy;~~

In the first quarter of 2022, the Company finalized its strategy for optimizing potential revenue from the licensing of its technology and plant traits. The strategy is two-pronged and reflects (1) a broad outreach to companies in the plant gene-editing and biotechnology space for their licensing of the Company’s intellectual property assets and (2) the monetization of the Company’s historically developed agricultural traits through their license to counterparties including seed companies, processors, and others. The Company is offering licenses for the many gene editing and breeding technologies in its patent portfolio, including its TALEN patent estate. As it relates to the licensing of agricultural traits strategy, active discussions are occurring on multiple traits, including the Company’s soybean and wheat offerings. The Company is targeting the execution of licenses in both the technology and trait licensing categories during 2022.

•	addressing the impacts of the ongoing COVID-19 pandemic, including implementing expense reduction efforts and seeking to bolster our liquidity position considering changing business needs and uncertain macro-economic conditions; and

In the fourth quarter of 2021, the Company contracted with a large food ingredient manufacturer to develop a soybean intended to produce an oil that could serve as a replacement for palm oil. The project remains on track for a first quarter of 2024 completion. The food ingredient manufacturer is funding the Company’s development costs over the term of the agreement and holds an option for future development and commercialization.

•	~~experiencing any delays or encountering issues with any of the above, including due to COVID-19 and its impacts.~~

In February 2022, the Company announced that Gerry Nuovo joined as its Senior Vice President of Business Development, bringing more than 30 years of experience in the specialty chemicals and biotechnology industries and diverse experience building multimillion-dollar income streams in the cosmeceuticals end market, including personal care and home care. Mr. Nuovo will be responsible for business development activities in cosmeceuticals, including potential partnerships, deal structures, valuation models, and subsequent transaction execution and alliance management.

~~OUR~~

In April 2022, the Company announced the hires of Ms. Suellen Boot as Business Development Director and Ms. Elizabeth Teigland as Manufacturing Director. Ms. Boot brings over 20 years of valuable business development experience to Calyxt where she will be responsible for a number of functions, including potential partnerships, deal structures, valuation models, and subsequent transaction execution and alliance management. Ms. Teigland brings over 15 years of chemistry and purification expertise to Calyxt and will be responsible for pilot to commercial scale production of the Company’s customer demand-driven compounds, and along with an R&D leader, the Verify stage of product development.

In February 2022, the Company closed

the

Follow-On Offering of 3,880,000 shares of its common stock, Pre-Funded Warrants to purchase up to 3,880,000 shares of its common stock, and Common Warrants to purchase up to 7,760,000 shares of its common stock. The gross proceeds of the offering were $10.9 million, before deducting underwriting fees and estimated offering expenses. The Company plans to use the approximately $10.0 million in net proceeds from the offering for enhancing the capabilities of its BioFactory production system and increasing its capacity to produce at larger scales, continuing to build out the Company’s PlantSpring technology platform and AIML capabilities, furthering customer relationships, and for working capital and general corporate purposes.

RELATIONSHIP WITH CELLECTIS AND COMPARABILITY OF ~~OUR~~ RESULTS

~~We are~~

The Company is a majority-owned subsidiary of Cellectis. As of March 31, ~~2021,~~2022, Cellectis owned ~~64.5%~~ 56.1 percent of ~~our~~the Company’s issued and outstanding common stock. Cellectis has certain contractual rights as well as rights pursuant to ~~our~~the Company’s certificate of incorporation and bylaws, in each case, asfor so long as it maintains threshold beneficial ownership levels in ~~our~~the Company’s shares.

~~We hold~~

The Company holds an exclusive license from Cellectis that broadly covers the use of engineered nucleases for plant gene editing. This intellectual property covers methods to edit plant genes using “chimeric restriction endonucleases,” which include TALEN^{®
, CRISPR/Cas9, zinc finger nucleases, and some types of meganucleases.
Cellectis has also guaranteed the lease of our headquarters facility.}

FINANCIAL OPERATIONS OVERVIEW

Revenue

~~For the three months ended March 31, 2021,~~ we

Revenue is recognized ~~revenue~~ from ~~the~~ sales of ~~high oleic soybean seed grain.~~

products, from licenses of technology, and from product development activities for customers.

- 18 -

Cost of Goods Sold ~~and Inventory~~

~~Certain grain costs, net~~

Cost of ~~the benefit from our seed activity, are capitalized to inventory. Additional costs or benefits~~goods sold are recognized as ~~incurred. Any valuation adjustments to inventory~~products are ~~recognized as incurred. Until the fourth quarter of 2020, cost~~sold. Generally, there are minimal costs of goods sold ~~included crush and refining losses that are expensed as incurred since they do not add to~~associated with the value of the finished products. Gains and losses resulting from commodity derivative contracts sold to convert our fixed price grain inventories and fixed price Forward Purchase Contracts to floating prices are recorded in current period cost of goods sold. Because we expect to sell grain at market prices, the economic effects of the hedges being recognized currently are expected to be fully offset when we sell the grain in a future period.

Company’s technology licensing activities.

Research and Development ~~Expense~~

~~Research and development~~ (R&D) ~~expenses consist of the costs of performing activities to discover and develop products and advance our intellectual property. We recognize~~Expense

The Company’s R&D expenses ~~as they are incurred.~~

~~Our R&D expenses~~primarily consist ~~primarily~~ of employee-related costs for personnel who research and develop ~~our~~its product candidates, fees for contractors who support product development ~~and breeding~~ activities, ~~expenses for trait validation,~~ purchasing material and supplies for ~~our~~its laboratories, licensing, an allocation of facility and information technology expenses, and other costs associated with owning and operating ~~our~~its own ~~laboratories.~~laboratories and pilot BioFactory capabilities. This includes the costs of performing activities to discover and develop products and advance the Company’s PlantSpring technology platform, including its intellectual property portfolio. BioFactory expenses from lab through pilot, unless incurred related to a specific product sold to a customer, are also classified as R&D expense. R&D expenses also include costs to write and support the research for filing patents.

The Company recognizes R&D expenses as they are incurred.

Selling, General, and Administrative ~~Expense~~

~~Selling, general, and administrative~~ (SG&A) Expense

SG&A expenses consist primarily of employee-related expenses for selling and licensing ~~our~~the Company’s products and employee-related expenses for ~~our~~its executive, legal, intellectual property, information technology, finance, and human resources functions. ~~In periods prior to 2021, these expenses also included employee-related and other expenses for selling soybean oil and meal, soybean acreage acquisition, and managing the soybean product supply chain.~~ Other SG&A expenses include facility and

~~- 17 -~~

~~Table of Contents~~

information technology expenses not otherwise allocated to R&D expenses, professional fees for auditing, tax and legal services, expenses associated with maintaining patents, consulting costs and other costs of ~~our~~the Company’s information systems, and costs to market ~~our~~its products.

Interest, net

Interest, net is comprised of interest income resulting from investments of cash and cash equivalents, short-term investments, unrealized gains and losses on short-term investments, issuance costs associated with the Common Warrants, and interest expense ~~on our~~incurred related to financing lease obligations. It is also driven by balances, yields, and timing of financing and other capital raising activities.

Non-operating

expenses

Non-operating

expenses are expenses that are not directly related to ~~our~~ ongoing operations and are primarily comprised of gains and losses from the

mark-to-market

of common stock warrants, foreign exchange-related transactions, and disposals of land, buildings, and equipment.

Anticipated Changes Between Revenues and Costs

As ~~we execute~~the Company executes upon ~~our streamlined~~its business model, ~~we expect~~it expects the composition of ~~our~~ revenues and costs to evolve. The Company anticipates most of its revenues in the near-term to be from product development activities for customers for both the BioFactory and agricultural production and technology licensing arrangements. Future cash and revenue-generating opportunities associated with these activities are expected to primarily arise from ~~seed sales, trait development~~

up-front

and ~~licensing activities,~~milestone payments, annual license fees, and ~~licensing arrangements. Under trait development~~royalties. Over the next several years as the BioFactory begins to produce products for customers, it is anticipated those revenues will grow and ~~licensing activities,~~surpass revenues from other sources. These revenues are ~~expected~~anticipated to arise from up-front, annual or milestone, and royalty payments upon the licensees’ commercial sale of products. Under licensing arrangements, revenues are expected to arise from up-front, annual, and royalty payments upon the licensees’ commercial sale of products.

Because our strategy is based on focusing on our core strengths in research and development, gene editing, and trait development, we expect R&D expenses to be the primary area of increase in our expenses. At the same time, because our streamlined business model relies on third parties assuming responsibility for agronomy infrastructure, product management, and commercialization, we expect that SG&A expense will decline as the new models are fully implemented.

have strong positive gross profit margins over time.

Recent Developments –

COVID-19

Update

As previously reported, our operations in Minnesota are classified as critical sector work under the State of Minnesota’s COVID-19 executive orders. Accordingly, most of our laboratory workers have continued to work onsite at our headquarters throughout the pandemic, and our R&D programs and seed distribution activities have not experienced material delays.

In accordance with ~~our~~ the Company’s

COVID-19

Preparedness Plan, Minnesota executive order requirements, and guidelines promoted by the Centers for Disease Control and Prevention, ~~we have~~the Company implemented health and safety measures for the protection of ~~our~~its onsite workers, ~~have~~ maintained remote work arrangements for ~~our~~ its

non-laboratory

personnel, and ~~have~~ implemented, as necessary, appropriate self-quarantine precautions for potentially affected laboratory personnel.

On May 28, 2021, nearly all Minnesota

COVID-19

restrictions came to an end, including all capacity limits and distancing requirements – both indoors and outdoors. The Company’s

non-laboratory

personnel returned to working onsite in

mid-July

2021.

During the ~~quarter~~three months ended March 31, ~~2021,~~2022, the

COVID-19

pandemic did not have a material impact on ~~our~~the Company’s operations. However, a resurgence or prolonging of the

COVID-19

pandemic, governmental response measures (including vaccination requirements or other mandatory health and safety requirements) and resulting disruptions could rapidly offset such improvements. Moreover, the long-term effects of the

COVID-19

pandemic on the financial markets ~~remain substantial~~ and broader ~~economic uncertainties persist,~~economy remain uncertain, which may make obtaining capital challenging and ~~have exacerbated~~may exacerbate the risk that ~~such~~ capital, if available, may not be available on terms acceptable to ~~us.~~the Company. There continues to be ~~significant~~ uncertainty relating to the

COVID-19

pandemic and its long-term impact, and many factors could affect ~~our~~the Company’s results and operations, including, but not limited to, those described in Part I, Item 1A, “Risk Factors” of ~~our 2020~~the Company’s Annual Report on Form ~~10-K.~~

10-K

for the year ended December 31, 2021.

- 1819 -

RESULTS OF OPERATIONS FOR THE THREE MONTHS ENDED MARCH 31, ~~2021~~2022, COMPARED TO THE THREE MONTHS ENDED MARCH 31, 2021

A summary of ~~our~~the Company’s results of operations for the three months ended March 31, 2022, and 2021 ~~and 2020~~ follows:

Three Months Ended March 31,

2021

2020

$ Change

% Change

Revenue
$
4,402

$
2,377

$
2,025

85
%
Cost of goods sold

6,745

3,884

2,861

74
%
Gross margin

(2,343
)

(1,507
)

(836
)

(55
)%
Research and development expense

3,050

2,787

263

9
%
Selling, general, and administrative expense

4,258

6,298

(2,040
)

(32
)%
Management fees and royalties

30

62

(32
)

(52
)%
Interest, net

(346
)

(398
)

52

13
%
Non-operating expenses

(1
)

(11
)

10

91
%
Net loss
$
(10,028
)

$
(11,063
)

$
1,035

9
%
Basic and diluted net loss per share
$
(0.27
)

$
(0.34
)

$
0.07

21
%
Adjusted EBITDA ¹
$
(6,827
)

$
(8,237
)

$
1,410

17
%


	Three Months Ended March 31,
	2022			2021			$ Change			% Change

	(In thousands, except percentage values)
Revenue	$	32		$	4,402		$	(4,370	)		(99	)%
Cost of goods sold		—			6,745			(6,745	)		(100	)%

Gross profit		32			(2,343	)		2,375			101	%
Research and development		2,941			3,050			(109	)		(4	)%
Selling, general, and administrative		3,180			4,258			(1,078	)		(25	)%
Management fees		—			30			(30	)		NM

Loss from operations		(6,089	)		(9,681	)		3,592			37	%
Interest, net		(17	)		(346	)		329			95	%
Non-operating expenses		487			(1	)		488			48,800	%

Net loss	$	(5,619	)	$	(10,028	)	$	4,409			44	%

Basic and diluted net loss per share	$	(0.13	)	$	(0.27	)	$	0.14			52	%

Adjusted EBITDA 1	$	(4,955	)	$	(6,827	)	$	1,872			27	%

See “Use of

Non-GAAP

Financial Information” ~~elsewhere in this report~~ for a discussion of Adjusted ~~Earnings Before Interest, Taxes, Depreciation and Amortization (EBITDA)~~EBITDA and a reconciliation of Adjusted EBITDA to Net loss, the most comparable GAAP measure.

~~Revenue~~

not meaningful

Revenue, Cost of Goods Sold, and Gross Profit

Revenues were nominal in the first quarter of 2022, a decrease of $4.4 million, or 99 percent, from the first quarter of 2021. Cost of goods sold was ~~$4.4~~zero in the first quarter of 2022, a decrease of $6.7 million, or 100 percent, from the first quarter of 2021. Gross profit was nominal, constituting 100 percent of revenue, in the first quarter of 2022, compared to negative $2.3 million, or negative 53 percent of revenue, in the first quarter of 2021. The decreases in revenue and cost of goods sold and improvement in gross profit were driven by the late 2021 completion of the wind-down of the Company’s soybean product line. All revenue in the first quarter of 2022 was associated with the Company’s agreement with a large food ingredient manufacturer to develop a palm oil alternative.

Research and Development Expense

R&D expense was $2.9 million in the first quarter of ~~2021, an increase~~2022, a decrease of ~~$2.0~~$0.1 million, or 854 percent, from the first quarter of ~~2020. The increase was~~ ~~driven by~~ ~~sales~~ of ~~a portion~~ of ~~the 2020 grain crop as compared to the first quarter of 2020, when we were selling soybean oil and meal. As of March 31, 2021, we had sold over 50 percent of the 2020 grain crop.~~

~~Cost of Goods Sold~~

~~Cost of goods sold~~ ~~were $6.7~~ ~~million in the first quarter of 2021, an~~ ~~increase~~ of $2.9 million, or 74 percent, from the first quarter of 2020. The increase was driven by higher volumes of product sold, higher average prices paid for grain as a result of increases in commodity market prices for soybeans, and $0.2 million of unrealized commodity derivative losses from hedging contracts sold to convert our fixed price grain inventory and fixed price Forward Purchase Contracts to floating prices to link them to market, consistent with how we expect to sell the grain. These increases were partially offset by the benefits resulting from the advancement of our soybean product line go-to-market strategy.

~~Gross Margin and Adjusted Gross Margin~~

~~Gross margin was a negative $2.3~~ ~~million, or~~ ~~negative 53 percent, in the first quarter of 2021, a decrease of $0.8~~ ~~million or~~ 55 ~~percent from the first quarter of~~ ~~2020, driven by higher volumes of product sold, higher cost of product sold as a result of increases in commodity prices for soybeans, and $0.2~~ ~~million of~~ unrealized commodity derivative losses from futures contracts sold to hedge our fixed price grain inventory and fixed price Forward Purchase Contracts. These increases were partially offset by higher selling prices and benefits from the advancement of our soybean product line go-to-market strategy.

~~Adjusted gross~~ ~~margin,~~ ~~a non-GAAP measure, was~~ ~~negative $1.3~~ ~~million, or~~ ~~negative 31~~ ~~percent, in the first quarter of 2021, compared to negative $1.2 million, or negative 49 percent, in the first quarter of~~ ~~2020. The improvement~~ ~~on a percentage basis~~ ~~was driven~~ ~~by benefits resulting from the advancement of our soybean product line go-to-market strategy.~~

See below under the heading “Use of Non-GAAP Financial Information” for a discussion of adjusted gross margin and a reconciliation of gross margin, the most comparable GAAP measure, to adjusted gross margin.

~~Research and Development Expense~~

~~R&D expenses~~ ~~were $3.1~~ ~~million in the first quarter of 2021, an increase of $0.3~~ ~~million, or nine percent,~~ ~~from the first quarter of 2020. The increase was driven by~~ ~~an increase in non-cash stock compensation and third-party R&D expenses.~~

~~Selling, General, and Administrative Expense~~

~~SG&A expenses were $4.3 million in the first quarter of 2021, a decrease of $2.0 million, or 32 percent, from the first quarter of 2020.~~

~~- 19 -~~

~~Table of Contents~~

2021. The decrease was primarily driven by ~~lower non-cash stock compensation expense of $2.8 million from~~ the recapture of

non-cash stock compensation from forfeitures of unvested stock awards, lower personnel costs as a result of the reduction in cost following the advancement of the go-to-market strategy for our soybean product line, and other cash expenses also decreased from the first quarter of 2020. These decreases were partially offset by an increase of $2.4 million in Section 16 officer transition expenses and increase in certain insurance costs.

~~Management Fees and Royalties~~

~~Management fees and royalties were $30,000 in the first quarter of 2021, a decrease of $32,000, or 52 percent.~~

~~Interest, net~~

~~Interest, net for the first quarter of 2021 was essentially flat compared to the first quarter of 2020.~~

~~Net Loss and Adjusted Net Loss~~

~~Net loss was $10.0~~ ~~million in first quarter of 2021, an improvement of $1.0~~ ~~million, or nine percent, from the first quarter of 2020. The improvement in net loss was driven by~~ ~~$2.7 million of lower~~ ~~non-cash stock compensation expenses~~ ~~as a result of a recapture~~ of ~~non-cash~~

stock compensation expense from the forfeiture of unvested stock awards ~~fewer stock awards granted,~~in the first quarter of 2022 and lower ~~stock award values~~,operating expenses, partially offset by a ~~$2.4~~ ~~million~~an increase in ~~Section 16 officer transition expenses~~allocated SG&A costs of $0.5 million.

Selling, General, and ~~a $0.8~~ ~~million~~ ~~decrease in gross margin.~~

~~Adjusted net loss~~Administrative Expense

SG&A expense was ~~$8.8~~$3.2 million in the first quarter of ~~2021, an improvement~~2022, a decrease of ~~$2.0~~$1.1 million, or 1825 percent, from the first quarter of ~~2020.~~2021. The decrease was driven by higher cost allocations to R&D expense of $0.5 million, lower insurance costs of $0.4 million, lower operating expenses of $0.2 million, and the recapture of

non-cash

stock compensation expense from the forfeiture of unvested awards in the first quarter of 2022. These decreases were partially offset by an increase of $0.2 million driven by the adoption of the lease accounting standard, which shifted amounts previously reported as interest expense to SG&A expense.

Interest, net

Interest, net was nominal in the first quarter of 2022, a decrease of $0.3 million, or 95 percent, from the first quarter of 2021. The decrease was driven by the adoption of the lease accounting standard, which shifted amounts previously reported as interest expense to SG&A expense.

Non-operating expenses

Non-operating expenses were income of $0.5 million in the first quarter of 2022, an improvement of $0.5 million, or 48,800 percent, from the first quarter of 2021. The improvement was driven by the mark-to-market of the Company’s Common Warrants, which declined in value due to a decline in stock price.

Net Loss and Adjusted Net Loss

Net loss was $5.6 million in first quarter of 2022, an improvement of $4.4 million, or 44 percent, from the first quarter of 2021. The improvement in net loss was driven by the completion of the wind-down of the soybean product line which drove an improvement in gross margin and lower operating expenses.

- 20 -

Adjusted net loss was $6.0 million in the first quarter of 2022, an improvement of $2.9 million, or 32 percent, from the first quarter of 2021. The improvement in adjusted net loss was driven by the ~~benefits resulting from~~ completion of the ~~advancement~~wind-down of ~~our~~the soybean product line ~~go-to-market strategy~~which drove an improvement in gross margin and ~~other reductions in~~lower operating expenses.

See below under the heading “Use of

Non-GAAP

Financial Information” for a discussion of adjusted net loss and a reconciliation of net loss, the most comparable GAAP measure, to adjusted net loss.

Net Loss Per Share and Adjusted Net Loss Per Share

Net loss per share was ~~$0.27~~$0.13 in the first quarter of ~~2021,~~2022, an improvement of ~~$0.07~~$0.14 per share, or 2152 percent, from the first quarter of ~~2020.The~~2021. The improvement in net loss per share was driven by the ~~change~~improvement in net ~~loss.~~

loss and a year-over-year increase in weighted average shares outstanding.

Adjusted net loss per share was ~~$0.24~~$0.14 in the first quarter of ~~2021,~~2022, an improvement of ~~$0.09~~$0.10 per share, or 2742 percent, from the first quarter of ~~2020.~~2021. The improvement in adjusted net loss per share was driven by the ~~change~~improvement in adjusted net ~~loss.~~

loss and a year-over-year increase in weighted average shares outstanding.

See below under the heading “Use of

Non-GAAP

Financial Information” for a discussion of adjusted net loss per share and a reconciliation of net loss per share, the most comparable GAAP measure, to adjusted net loss per share.

Adjusted EBITDA

Adjusted EBITDA loss was ~~$6.8~~$5.0 million in the first quarter of ~~2021,~~2022, an improvement of ~~$1.4~~$1.9 million, or 1727 percent, from the first quarter of ~~2020.~~2021. The improvement was driven by the ~~benefits resulting from~~ completion of the ~~advancement~~wind-down of ~~our~~the soybean product line ~~go-to-market strategy~~which drove an improvement in gross margin and ~~other reductions in~~lower operating expenses.

See below under the heading “Use of

Non-GAAP

Financial Information” for a discussion of adjusted EBITDA and a reconciliation of net loss, the most comparable GAAP measure, to adjusted EBITDA.

LIQUIDITY AND CAPITAL RESOURCES

Liquidity

~~Our~~

The Company’s primary ~~source~~sources of liquidity are its cash and cash equivalents, with additional liquidity accessible from the capital markets, including under its ATM Facility. That additional liquidity is ~~our~~subject to market conditions and other factors, including limitations that may apply to the Company under applicable SEC regulations.

As of March 31, 2022, the Company had $17.9 million of cash, cash equivalents, and restricted cash. The Company’s restricted cash balances are cash and cash equivalents deposited in an amount equal to future equipment rent payments, as required under its equipment lease facility. The Company may request the return of excess restricted cash collateral annually in December. The Company’s restricted cash was $0.6 million as of March 31, 2022. Current liabilities were $9.5 million as of March 31, 2022. The Company’s current cash, cash equivalents, and restricted cash is sufficient to cover all of its current liabilities as of March 31, 2022.

On February 23, 2022, the Company completed a

follow-on

offering (the

Follow-On

Offering) and issued 3,880,000 shares of its common stock,

pre-funded

warrants to purchase up to 3,880,000 shares of its common stock

(Pre-Funded

Warrants), and common warrants to purchase up to 7,760,000 shares of its common stock (Common Warrants). In the aggregate, the Company received net proceeds of $10.0 million, after deducting approximately $0.9 million of underwriting discounts and estimated other offering expenses.

The Company’s liquidity funds its

non-discretionary

cash requirements and its discretionary spending. Prior to the wind-down of the Company’s soybean

go-to-market

strategy, working capital was its principal

non-discretionary

funding requirement. In addition, the Company has contractual obligations related to recurring business operations, primarily related to its headquarters and laboratory facilities. The Company’s principal discretionary cash spending is for capital expenditures. The Company’s capital expenditures include its pilot-scale BioFactory production system which became operational in December 2021 and may require additional capital expenditures in 2022 to support additional pilot-scale or commercial-level production based on customer demand.

- 21 -

Cash Flows from Operating Activities


	Three Months Ended March 31,
In Thousands	2022			2021			$ Change			% Change
Net loss	$	(5,619	)	$	(10,028	)	$	4,409			44	%
Depreciation and amortization expenses		370			585			(215	)		(37	)%
Stock-based compensation		531			(1,450	)		1,981			137	%
Unrealized (gain) loss on mark-to-market of common stock warrants		(435	)		—			(435	)		NM
Changes in operating assets and liabilities		(1,251	)		1,476			(2,727	)		(185	)%

Net cash used by operating activities	$	(6,404	)	$	(9,417	)	$	3,013			32	%

NM - not meaningful

Net cash used by operating activities was $6.4 million in the first quarter of 2022, an improvement of $3.1 million, or 32 percent, from the first quarter of 2021. The improvement was driven by a $4.4 million decrease in net loss and a $2.0 million increase in

non-cash

stock compensation, primarily the result of the forfeiture of unvested stock awards in the first quarter of 2021, both partially offset by a $2.7 million decline in cash provided by operating assets and liabilities due to the completion of the wind-down of the soybean product line.

The Company expects cash used by operating activities in 2022 to be higher than 2021 driven by the elimination of the working capital benefit received in 2021 from the wind-down of the soybean product line, and a slightly higher net loss driven by AIML and BioFactory-related investments.

Cash Flows from Investing Activities


	Three Months Ended March 31,
In Thousands	2022			2021			$ Change			% Change
Sales and (purchases) of short-term investments, net	$	—		$	8,653		$	(8,653	)		(100	)%
Purchases of land, buildings, and equipment		(545	)		(269	)		(276	)		(103	)%

Net cash (used by) provided by investing activities	$	(545	)	$	8,384		$	(8,929	)		(107	)%

Net cash used by investing activities was $0.5 million in the first quarter of 2022, an increase in cash used of $8.9 million, or 107 percent, from the first quarter of 2021. This increase in cash used was driven by the 2021 draw-down of short-term investments to fund operations and slightly higher capital expenditures.

The Company expects cash used for purchases of land, buildings, and equipment in 2022 to be higher than 2021, driven by investments to scale its BioFactory production system and its AIML capabilities.

Cash Flows from Financing Activities


	Three Months Ended March 31,
In Thousands	2022			2021			$ Change			% Change
Proceeds from common stock issuance	$	11,209		$	—		$	11,209			NM
Costs incurred related to the issuance of stock		(704	)		—			(704	)		NM
Repayments of financing lease obligations		(94	)		(88	)		(6	)		(7	)%
Proceeds from the exercise of stock options		—			208			(208	)		(100	)%

Net cash provided by financing activities	$	10,411		$	120			10,291			8,576	%

NM – not meaningful

Net cash provided by financing activities was $10.4 million in the first quarter of 2022, an increase of $10.3 million, or 8,576 percent, from the first quarter of 2021. The increase was primarily driven by $10.0 million of net proceeds from the

Follow-On

Offering.

- 22 -

Capital Resources

Operating Capital Requirements

The Company has incurred losses since its inception and its net loss was $5.6 million for the three months ended March 31, 2022, and it used $6.4 million of cash for operating activities for the three months ended March 31, 2022. The Company’s primary sources of liquidity are its cash and cash equivalents, with additional liquidity accessible, subject to market conditions and other factors, including limitations that may apply to the Company under applicable SEC regulations, from the capital ~~markets.~~ markets, including under its ATM Facility.

As of March 31, ~~2021, we~~2022, the Company had ~~a total of $20.4~~$17.9 million of cash, cash equivalents, ~~short-term investments,~~ and restricted cash. Short-term investments consist of corporate debt securities and commercial paper with more than 90 days to maturity at issuance. All of these amounts are convertible to cash within 90 days except for $1.0 million ofThe Company’s restricted cash is associated with ~~our~~its equipment financing ~~leases. Current liabilities were $6.3~~leases and was $0.6 million as of March 31, ~~2021. Accordingly, we have cash, cash equivalents, and short-term investments sufficient~~2022, with $0.5 million scheduled to ~~fund all short-term obligations as of that date.~~

~~- 20 -~~

~~Table of Contents~~

Our liquidity funds our non-discretionary cash requirements and our discretionary spending. Working capital is our principal non-discretionary funding requirement. In addition, we have contractual obligations related to our recurring business operations, primarily related to lease obligations. Our principal discretionary cash spending includes capital expenditures.

~~Gene editing is a highly regulated activity, and we incur significant expense related to our monitoring of, and compliance with, applicable regulatory requirements~~be returned in the United States. To the extent that we opportunistically pursue business arrangements that bring innovations developed for North America to new territories, we would be required to incur significant additional regulatory costs in order to comply with applicable regulatory requirements outside the United States.

~~We incurred losses from operations of $9.7~~December 2022. Current liabilities were $9.5 million for the three months ended March 31, 2021, and $10.7 million for the three months ended March 31, 2020. As of March 31, 2021, we had an accumulated deficit of $176.9 million and expect to continue to incur losses in the future.

~~We have $1.5 million outstanding under our Paycheck Protection Program loan~~ as of March 31, ~~2021. We have applied~~2022.

In the ~~proceeds from~~

Follow-On

Offering, the ~~Paycheck Protection Program loan toward qualifying expenses~~Company issued 3,880,000 shares of its common stock, 3,880,000

Pre-Funded

Warrants, and ~~on October 21, 2020, as modified December 29, 2020, applied for forgiveness of the full principal amount and all accrued interest.~~ On April 8, 2021, we were notified by the SBA that the full amount of our Paycheck Protection Program loan had been forgiven. We expect to record income in the second quarter of 2021 for the full amount of the loan and the associated accrued interest.

~~Cash Flows from Operating Activities~~

Three Months Ended March 31,

In Thousands
2021

2020

$ Change

% Change

Net loss
$
(10,028
)

$
(11,063
)

$
1,035

9
%
Depreciation and amortization expense

585

452

133

29
%
Stock-based compensation

(1,450
)

1,271

(2,721
)

(214
)%
Changes in operating assets and liabilities

1,476

(2,898
)

4,374

151
%
Net cash used by operating activities
$
(9,417
)

$
(12,238
)

$
2,821

23
%

Net cash used by operating activities decreased by $2.8 million, primarily driven by a $4.4 million improvement in cash used by operating assets and liabilities primarily due to the severance recorded following the departure of Mr. Blome and $1.0 million decrease in net loss. These were partially offset by a $2.7 ~~million change in the impact from non-cash stock compensation expense, primarily the result of the forfeiture of unvested stock awards.~~

We expect net cash used by operating activities over the remainder of 2021 to be lower than 2020 as a result of expense reductions following the advancement of the business model for our soybean product line.

~~Cash Flows from Investing Activities~~

Three Months Ended March 31,

In Thousands
2021

2020

$ Change

% Change

Sales and (purchases) of short-term investments, net
$
8,653

$
(38,620
)

$
47,273

122
%
Purchases of land, buildings, and equipment

(269
)

(317
)

48

15
%
Net cash provided by (used by) investing activities
$
8,384

$
(38,937
)

47,321

122
%

~~Net cash provided by investing activities increased by $47.3 million. This was driven by changes in purchases and sales of short-term investments.~~7,760,000 Common Warrants. In the ~~first quarter~~aggregate, the Company received net proceeds of ~~2020, we invested cash~~$10.0 million, after deducting approximately $0.9 million of underwriting discounts and ~~cash equivalents in short-term investments to diversify counterparty credit risk.~~

~~We expect net cash used for purchases of land, buildings,~~estimated other offering expenses.

The Company has incurred losses since its inception and ~~equipment in the remainder of 2021 to be comparable to 2020, and proceeds from short-term investments to continue during 2021 as we continue to use those investments to fund operations.~~

~~- 21 -~~

~~Table of Contents~~

~~Cash Flows from Financing Activities~~

Three Months Ended March 31,

In Thousands
2021

2020

$ Change

% Change

Repayments of financing lease obligations
$
(88
)

$
(45
)

$
(43
)

(96
)%
Proceeds from the exercise of stock options

208

—

208

NM

Net cash provided by (used by) financing activities
$
120

$
(45
)

$
165

367
%

~~NM – not meaningful~~

~~Net cash provided by financing activities increased by $0.2 million, primarily driven by proceeds from stock option exercises.~~

~~We expect net cash from financing activities in 2021 to be less than 2020 due to the cash inflows from the $1.5 million Paycheck Protection Program loan received in 2020.~~ ~~On April 8, 2021, we were notified by the SBA~~anticipates that ~~the full amount of our Paycheck Protection Program loan had been forgiven.~~

~~CAPITAL RESOURCES~~

~~Operating Capital Requirements~~

~~Considering factors such as~~ ~~cash raised in October 2020, our~~ anticipated cash burn rate, our anticipated expense reduction efforts, our expectations regarding an effective advancement of our go-to-market soybean strategy, and anticipated cash receipts from our product development and technology licensing efforts with partners, we believe our cash, cash equivalents, short-term investments, and restricted cash as of March 31, 2021, will be enough to fund our operations for at least the next twelve months and into the second half of 2022.

~~We anticipate that we~~it will continue to generate losses for the next several ~~years before revenue is enough~~years. Over the longer term and until the Company can generate cash flows sufficient to support ~~our~~its operating capital ~~requirements.~~ ~~Until we can generate substantial cash flow, we expect~~requirements, it expects to finance a portion of future cash needs through (i) cash on hand, ~~public or private equity or debt financings, government or other third-party funding, and~~(ii) commercialization activities, which may result in various types of revenue streams from ~~seed sales and~~(a) future product development agreements ~~trait licenses,~~ and technology licenses, including upfront and milestone payments, annual license fees, and ~~royalties.~~ royalties; and (b) product sales from its proprietary BioFactory production system; (iii) government or other third-party funding, which the Company expects to be more readily available if Cellectis were to own less than 50 percent of the Company’s common stock, (iv) public or private equity or debt financings, or (v) a combination of the foregoing. However, additional capital may not be available on reasonable terms, if at all.

For example, based on the Company’s public float, as of the date of the filing of its Annual Report on Form

10-K,

the Company is only permitted to utilize a “shelf” registration statement, including the registration statement under which the Company’s ATM Facility is operated, subject to Instruction I.B.6 to Form

S-3,

which is referred to as the “baby shelf” rules. For so long as the Company’s public float is less than $75,000,000, it may not sell more than the equivalent of

one-third

Follow-On

Offering, and considering additional efforts in reassessing its discretionary spending, is sufficient to fund its operations into early 2023. The Company’s management has concluded there is substantial doubt regarding its ability to continue as a going concern because it anticipates that it will need to raise additional capital to support this business plan for a period of 12 months or more from the date of this filing.

If ~~we are~~the Company is unable to raise additional capital in ~~enough amounts~~a sufficient amount or on acceptable terms, ~~acceptable~~management may be required to ~~us, we~~implement various cost reduction and other cash-focused measures to manage liquidity, and the Company may have to significantly delay, scale back, or ~~discontinue the development or commercialization of our activities. Failure to receive additional funding could cause us to~~ cease operations, in part or in full. If ~~we raise~~the Company raises additional funds through the issuance of additional debt or equity securities, it could result in dilution to ~~our~~its existing stockholders and increased fixed payment obligations, and these securities may have rights senior to those of ~~our~~the Company’s shares of common stock. Any of these events could significantly harm ~~our~~the Company’s business, financial condition, and prospects.

~~Our~~

The Company’s financing needs are subject to change depending on, among other things, the success of ~~our~~its product development efforts, the effective execution of ~~our streamlined~~its business model, ~~our~~its revenue, and ~~our~~its efforts to effectively manage expenses. The effects of the

COVID-19

pandemic, other macroeconomic events, and potential geopolitical developments on the financial markets and broader economic uncertainties may make obtaining capital through equity or debt financings more challenging and ~~have exacerbated~~may exacerbate the risk that such capital, if available, may not be available on terms acceptable to ~~us.~~

~~In response to current economic conditions, we have postponed non-essential capital expenditures and undertaken other efficiency efforts. In addition,~~ the headcount reductions undertaken in connection with our business model advancement will contribute to our cost-saving initiatives. We will continue to review our operating expenses and to take actions that support efficient operations, financial flexibility, and optimized liquidity.

Company.

- 23 -

CONTRACTUAL OBLIGATIONS, COMMITMENTS, AND CONTINGENCIES

As of March 31, ~~2021,~~2022, there were no material changes in ~~our~~the Company’s commitments under contractual obligations as disclosed in ~~our~~its Annual Report, except that our Forward Purchase Contracts, which consist of commitments to purchase grain and seed, have decreased to $11.7 million from $21.2 million. During the quarter, we recorded $2.3 million of cash expense for separation-related payments to Mr. Blome, our former chief executive officer. The cash payments to Mr. Blome will be made over a period of 24 months, which began in March 2021.

Report.

CRITICAL ACCOUNTING ~~POLICIES~~

ESTIMATES

The preceding discussion and analysis of ~~our~~the Company’s financial condition and results of operations are based upon ~~our~~its consolidated financial statements and the related disclosures, which have been prepared in accordance with U.S. GAAP. The preparation of these consolidated financial statements requires usthe Company to make estimates, assumptions, and judgments that affect the reported amounts in ~~our~~its consolidated financial statements and accompanying notes. ~~We base our~~The Company bases its estimates on historical experience and on various other assumptions that ~~we believe~~it believes to be reasonable under the circumstances, the results of which form the basis for making judgments about the carrying values of assets and liabilities that are not readily apparent from other sources. Actual results may differ from these estimates under different

~~- 22 -~~

~~Table of Contents~~

assumptions or conditions. ~~We believe~~The Company believes the policies discussed in Note 1, Basis of Presentation and Summary of Significant Accounting Policies, are the most critical to an understanding of ~~our~~its financial condition and results of operations because they require usit to make estimates, assumptions, and judgments about matters that are inherently uncertain.

Valuation of Common Warrants

The Common Warrants have been classified as a liability in the Company’s consolidated balance sheet because the warrants include a put option election available to the holder of a Common Warrant that is contingently exercisable if the Company enters into a Fundamental Transaction through a Change of Control Put. If the Change of Control Put is exercised by the holder of a Common Warrant, they may elect to receive either the consideration of the Fundamental Transaction or put the Common Warrant back to the Company in exchange for cash, based on terms and timing specified in the Common Warrant. If the put option is exercised, the Company is required to pay cash to the holder in an amount as determined by the Black Scholes pricing model, with assumptions determined in accordance with the terms of the Common Warrants. Those assumptions were as follows on March 31, 2022:


	As of March 31, 2022
Estimated fair value of Common Warrants	$	0.64
Assumptions:
Risk-free interest rate		2.5	%
Expected volatility		80.0	%
Expected term to liquidation (in years)		5.4

A ten percent change in any of the assumptions would not have had a material effect on the Company’s results of financial condition or results of operations.

As of March 31, ~~2021,~~2022, there ~~have been~~were no other significant changes to ~~our~~the Company’s critical accounting policies disclosure reported in “Critical Accounting Estimates” in ~~our~~its Annual Report.

~~RECENTLY ISSUED ACCOUNTING PRONOUNCEMENTS~~

In February 2016, the Financial Accounting Standards Board (FASB) issued Accounting Standard Update (ASU) No. 2016-02, “Leases (Topic 842)” (ASU 2016-02). Under ASU 2016-02, an entity will be required to recognize assets and liabilities for the rights and obligations created by leases on the entity’s balance sheet for both finance and operating leases. For leases with a term of 12 months or less, an entity can elect to not recognize lease assets and lease liabilities and expense the lease over a straight-line basis for the term of the lease.Because we are an emerging growth company, the requirements of the new standard are effective for annual reporting periods beginning after December 15, 2021, and interim periods within those annual periods. We are in the process of analyzing the impact of this standard on our results of operations and financial position.

In June 2016, the FASB issued ASU No. 2016-13, “Financial Instruments – Credit Losses (Topic 326)” (ASU 2016-13). ASU 2016-13 creates accounting requirements on how to account for credit losses on most financial assets and certain other instruments. This will require the estimation of lifetime expected credit losses and corresponding recognition of allowance for losses on trade and other receivables, loans, and other instruments held at amortized cost. The ASU requires certain recurring disclosures and is effective for annual periods, and interim periods within those annual periods, beginning on or after December 15, 2023. We are in the process of analyzing the impact of this standard on our results of operations.

USE OF

NON-GAAP

FINANCIAL INFORMATION

To supplement ~~our audited~~the Company’s financial results prepared in accordance with GAAP, ~~we have~~it has prepared certain

non-GAAP

measures that include or exclude special items. These

non-GAAP

measures are not meant to be considered in isolation or as a substitute for financial information presented in accordance with GAAP and should be viewed as supplemental and in addition to ~~our~~the Company’s financial information presented in accordance with GAAP. Investors are cautioned that there are material limitations associated with the use of

non-GAAP

financial measures. In addition, other companies may report similarly titled measures, but calculate them differently, which reduces their usefulness as a comparative measure. Management utilizes these

non-GAAP

metrics as performance measures in evaluating and making operational decisions regarding ~~our~~the Company’s business.

The Company’s 2021

non-GAAP

financial measures reflect adjustments for certain commodity derivatives entered into in connection with its soybean product line. As a result of the completed wind-down of this product line, the Company held no commodity derivative contracts as of March 31, 2022.

- 24 -

The Company presents adjusted net loss, a

non-GAAP

measure, and defines it as net loss including adjustments necessary to present ~~adjusted~~the underlying gross ~~margin, a non-GAAP measure that excludes the effects~~profit of its soybean product line, including (i) unrealized gains and losses associated with commodity derivatives entered into to hedge the change in value of fixed price grain inventories and fixed price ~~Forward Purchase Contracts as~~grain production agreements that should be recognized in the ~~expected impact from these contracts will be fully offset~~future when the underlying ~~grain~~inventory is sold, (ii) gains and ~~excludes~~losses from commodity derivatives realized in prior periods but associated with inventory sold in the ~~impact of any~~current period, (iii) net realizable value adjustments to inventories occurring in the period which ~~would~~ otherwise ~~have been recorded as an adjustment to value in a prior period or~~ would have been ~~recorded in a future period as the underlying products are sold.~~

~~We provide~~recognized in the table below a reconciliation of gross margin, which is the most directly comparable GAAP financial measure, to adjusted gross margin. We provide adjusted gross margin because we believe that this non-GAAP financial metric provides investors with useful supplemental information at this stage of commercialization as the amounts being adjusted affect the period-to-period comparability of our gross margins and financial performance.

~~The table below presents a reconciliation of gross margin to adjusted gross margin:~~

Three Months Ended March 31,

In Thousands
2021

2020

Gross margin (GAAP measure)
$
(2,343
)

$
(1,507
)
Gross margin percentage

(53
)%

(63
)%
Non-GAAP adjustments:

Unrealized mark-to-market loss

211

—

Net realizable value adjustment to inventories

787

334

Adjusted gross margin
$
(1,345
)

$
(1,173
)
Adjusted gross margin percentage

(31
)%

(49
)%

~~We present adjusted net loss, a non-GAAP measure, and define it as net loss~~ excluding the effects of commodity derivatives entered into to hedge the change in value of fixed price grain inventories and fixed price Forward Purchase Contracts as the expected impact from these contracts will be fully offsetfuture when the underlying ~~grain~~inventory is sold, ~~any~~and (iv) net realizable value adjustments ~~to inventories occurring~~recognized in prior periods but associated with inventory sold in the current period, ~~which would otherwise have been recorded as an adjustment to value in a prior period or would have been recorded in a~~

~~- 23 -~~

~~Table of Contents~~

~~future period as the underlying products are sold,~~and excluding cash-based Section 16 officer transition expenses, the recapture of

non-cash

stock compensation ~~expense primarily~~ associated with the departure of Section 16 officers, and

non-operating ~~expenses, which are primarily gains and losses on foreign exchange transactions and losses on the disposals of land, buildings, and equipment.~~

~~We provide~~

expenses.

The Company provides in the table below a reconciliation of net loss, which is the most directly comparable GAAP financial measure, to adjusted net loss. ~~We provide~~The Company provides adjusted net loss because ~~we believe~~it believes that this

non-GAAP

financial metric provides investors with useful supplemental information at this stage of commercialization as the amounts being adjusted affect the

period-to-period

comparability of ~~our~~ net losses and financial performance.

The table below presents a reconciliation of net loss to adjusted net loss:

Three Months Ended March 31,

In Thousands
2021

2020

Net loss (GAAP measure)
$
(10,028
)

$
(11,063
)
Non-GAAP adjustments:

Unrealized mark-to-market loss

211

—

Net realizable value adjustment to inventories

787

334

Section 16 officer transition expenses

2,721

360

Recapture of non-cash stock compensation

(2,540
)

(471
)
Non-operating expenses

1

11

Adjusted net loss
$
(8,848
)

$
(10,829
)

~~We present~~
   Three Months Ended March 31,
In Thousands    2022 2021
Net loss (GAAP measure)    $ (5,619 ) $ (10,028 )
Non-GAAP
adjustments:

Commodity derivative impact, net    —   211
Net realizable value adjustment to inventories    —   787
Section 16 officer transition expenses    116 2,721
Recapture of
non-cash
stock compensation
   —   (2,540 )
Non-operating
expenses
   (487 ) 1

Adjusted net loss    $ (5,990 ) $ (8,848 )

The Company presents adjusted net loss per share,, a

non-GAAP

measure, and ~~define~~defines it as net loss per share ~~excluding~~including adjustments necessary to present the ~~effects~~underlying gross profit of its soybean product line, including (i) unrealized gains and losses associated with commodity derivatives entered into to hedge the change in value of fixed price grain inventories and fixed price ~~Forward Purchase Contracts as~~grain production agreements that should be recognized in the ~~expected impact from these contracts will be fully offset~~future when the underlying ~~grain~~inventory is sold, ~~any~~(ii) gains and losses from commodity derivatives realized in prior periods but associated with inventory sold in the current period, (iii) net realizable value adjustments to inventories occurring in the period which ~~would~~ otherwise ~~have been recorded as an adjustment to value in a prior period or~~ would have been ~~recorded~~recognized in athe future ~~period as~~when the underlying ~~products are~~inventory is sold, and (iv) net realizable value adjustments recognized in prior periods but associated with inventory sold in the current period, and excluding cash-based Section 16 officer transition expenses,the recapture of

non-cash

stock compensation ~~expense primarily~~ associated with the departure of Section 16 officers, and

non-operating ~~expenses, which are primarily gains and losses on foreign exchange transactions and losses on the disposals of land, buildings, and equipment~~.

~~We provide~~

expenses.

The Company provides in the table below a reconciliation of net loss per share, which is the most directly comparable GAAP financial measure, to adjusted net loss per share. ~~We provide~~The Company provides adjusted net loss per share because ~~we believe~~it believes that this

non-GAAP

financial metric provides investors with useful supplemental information at this stage of commercialization as the amounts being adjusted affect the

period-to-period

comparability of ~~our~~ net losses per share and financial performance.

The table below presents a reconciliation of net loss per share to adjusted net loss per share:

Three Months Ended March 31,

2021

2020

Net loss per share (GAAP measure)
$
(0.27
)

$
(0.34
)
Non-GAAP adjustments:

Unrealized mark-to-market loss

0.01

—

Net realizable value adjustment to inventories

0.02

0.01

Section 16 officer transition expenses

0.07

0.01

Recapture of non-cash stock compensation

(0.07
)

(0.01
)
Non-operating expenses

—

—

Adjusted net loss per share
$
(0.24
)

$
(0.33
)

~~We present~~
   Three Months Ended March 31,
   2022 2021
Net loss per share (GAAP measure)    $ (0.13 ) $ (0.27 )
Non-GAAP
adjustments:

Commodity derivative impact, net    —   0.01
Net realizable value adjustment to inventories    —   0.02
Section 16 officer transition expenses    —   0.07
Recapture of
non-cash
stock compensation
   —   (0.07 )
Non-operating
expenses
   (0.01 ) —

Adjusted net loss per share    $ (0.14 ) $ (0.24 )

- 25 -

The Company presents adjusted EBITDA, a

non-GAAP

measure, and ~~define~~defines it as net loss ~~excluding interest, net, depreciation~~including adjustments necessary to present the underlying gross profit of its soybean product line, including (i) unrealized gains and ~~amortization expenses, stock-based compensation expenses including~~ ~~the recapture of non-cash stock compensation expense primarily~~losses associated with ~~Section 16 officers, the effects of~~ commodity derivatives entered into to hedge the change in value of fixed price grain inventories and fixed price ~~Forward Purchase Contracts as~~grain production agreements that should be recognized in the ~~expected impact from these contracts will be fully offset~~future when the underlying ~~grain~~inventory is sold, ~~any~~(ii) gains and losses from commodity derivatives realized in prior periods but associated with inventory sold in the current period, (iii) net realizable value adjustments to inventories occurring in the period which ~~would~~ otherwise ~~have been recorded as an adjustment to value in a prior period or~~ would have been ~~recorded~~recognized in athe future ~~period as~~when the underlying ~~products are~~inventory is sold, and (iv) net realizable value adjustments recognized in prior periods but associated with inventory sold in the current period, and excluding interest, net, depreciation and amortization expenses, operating lease right-of-use asset amortization expenses,

non-cash

stock compensation expenses including the recapture of

non-cash

stock compensation associated with the departure of Section 16 officers, cash-based Section 16 officer transition expenses, and

non-operating ~~expenses, which are primarily gains and losses on foreign exchange transactions and losses on the disposals of land, buildings, and equipment.~~

~~We provide~~

expenses.

The Company provides in the table below a reconciliation of net loss, which is the most directly comparable GAAP financial measure, to adjusted EBITDA. Because adjusted EBITDA excludes

non-cash

items and discrete or infrequently occurring items, ~~we believe~~the Company believes that adjusted

~~- 24 -~~

~~Table of Contents~~

EBITDA provides investors with useful supplemental information about the operational performance of ~~our~~its business and facilitates the

period-to-period

comparability of ~~our~~ financial results where certain items may vary significantly independent of ~~our~~ business performance.

The table below presents a reconciliation of net loss to adjusted EBITDA:

Three Months Ended March 31,

In Thousands
2021

2020

Net loss (GAAP measure)
$
(10,028
)

$
(11,063
)
Non-GAAP adjustments:

Interest, net

346

398

Depreciation and amortization expenses

585

452

Stock-based compensation expenses

(1,450
)

1,271

Unrealized mark-to-market loss

211

—

Net realizable value adjustment to inventories

787

334

Section 16 officer transition expenses

2,721

360

Non-operating expenses

1

11

Adjusted EBITDA
$
(6,827
)

$
(8,237
)


	Three Months Ended March 31,
In Thousands	2022			2021
Net loss (GAAP measure)	$	(5,619	)	$	(10,028	)
Non-GAAP adjustments:
Interest, net		17			346
Depreciation and amortization expenses		370			585
Operating lease right-of-use asset amortization expenses		177			—
Stock-based compensation expenses		531			(1,450	)
Commodity derivative impact, net		—			211
Net realizable value adjustment to inventories		—			787
Section 16 officer transition expenses		116			2,721
Non-operating expenses		(487	)		1

Adjusted EBITDA	$	(4,955	)	$	(6,827	)

Item 3. Quantitative and Qualitative Disclosures About Market Risk

For quantitative and qualitative disclosures about market risk that affect us, see “Quantitative and Qualitative Disclosures About Market Risk” in Item 7A of Part II of the Annual Report. There have been no material changes in information that would have been provided in the context of Item 3 from the end of the preceding year until March 31, ~~2021.~~2022. However, ~~we do~~the Company does provide risk management discussion in various places in this Quarterly Report on Form

10-Q,

primarily in Note 2.3. Financial Instruments Measured at Fair Value ~~Hedging Activities,~~ and Concentrations of Credit Risk.

Item 4. Controls and Procedures

Management’s Evaluation of Disclosure Controls and Procedures

Based on an evaluation under the supervision and with the participation of ~~our~~the Company’s management, ~~our~~its principal executive officer and principal financial officer have concluded that ~~our~~the Company’s disclosure controls and procedures, as defined in Rules

13a-15(e)

and

15d-15(e)

under the Exchange Act, were effective as of March 31, ~~2021.~~

2022.

Changes in Internal Control over Financial Reporting

There were no changes in ~~our~~the Company’s internal control over financial reporting that occurred during the three months ended March 31, ~~2021,~~2022, that have materially affected, or that are reasonably likely to materially affect, ~~our~~the Company’s internal control over financial reporting.

- 2526 -

PART II. OTHER INFORMATION

Item 1. Legal Proceedings

~~We are~~

The Company is not a party to any material pending legal proceedings as of March 31, ~~2021.~~2022. From time to time, wethe Company may be involved in legal proceedings arising in the ordinary course of business.

Item 1A. Risk Factors

There have been no material changes in risk factors in the period covered by this report. See the discussion of risk factors in Part I, Item 1A “Risk Factors” of ~~our~~the Company’s Annual Report on Form

10-K

for the year ended December 31, ~~2020.~~

2021.

Item 2. Unregistered Sales of Equity Securities and Use of Proceeds.

~~In the three months ended March 31, 2021, the~~

The Company did not repurchase any shares of stock or have any unregistered sales of equity securities.

during the three months ended March 31, 2022.

Item 5. Other Information.

Approval of 2022 Annual Incentive Payment Criteria

On March 4, 2022, Calyxt established the 2022 Short Term Incentive Plan (“STIP”), which provides performance-based cash awards for certain of the Company’s executives, subject to a maximum limit of 200% of the executive’s base salary. Under the STIP, the eligible executives will receive a performance bonus based on a percentage of the individual’s annual base salary, with Company performance objectives and individual performance objectives established by the Board of Directors of the Company (the “Board”), and each comprising 50% of the bonus determination for executive officers other than the CEO. The Company performance objectives comprise 100% of the bonus determination for the CEO. To be eligible to receive a bonus under the STIP, a participant in the plan must be employed by the Company as of both December 31, 2022 and the payment date, unless otherwise provided in a written agreement between the Company and the participant, and bonuses are subject to clawback to the extent required or permitted by law. The foregoing description of the STIP does not purport to be complete and is qualified by reference in its entirety by reference to the STIP, a copy of which is attached to this report as Exhibit 10.2 and is incorporated herein by reference. In accordance with the terms of the form of performance stock unit agreement (the “PSU Agreement”) filed as Exhibit 10.1 to this Form 10-Q, and incorporated herein by reference, the target performance goals under the Company’s 2022 STIP shall also apply for purposes of the “Percentage Achievement” under the PSU Agreement for the performance period from January 1, 2022 to and including December 31, 2022.

- 2627 -

SIGNATURE

Pursuant to the requirements of the Exchange Act of 1934, the Registrant has duly caused this report to be signed on its behalf by the undersigned, thereunto duly authorized, on May ~~6, 2021~~.

5, 2022.


		CALYXT, INC.

By:	~~By:~~	/s/ ~~Yves J. Ribeill, Ph.D.~~ Michael A. Carr
Name:	~~Name:~~	~~Yves J. Ribeill, Ph.D.~~ Michael A. Carr
Title:	~~Title:~~	President & Chief Executive ~~Chair of the Board of Directors~~ Officer (Principal Executive Officer)

By:	~~By:~~	/s/ William F. Koschak
Name:	~~Name:~~	William F. Koschak
Title:	~~Title:~~	Chief Financial Officer (Principal Financial and Accounting Officer)

- 2829 -

	March 31, 2021 (unaudited)			December 31, 2020
Assets
Current assets:
Cash and cash equivalents	$	16,386		$	17,299
Short-term investments		3,045			11,698
Restricted cash		393			393
Accounts receivable		1,354			4,887
Inventory		4,532			1,383
Prepaid expenses and other current assets		3,347			3,930
Total current assets		29,057			39,590
Non-current restricted cash		597			597
Land, buildings, and equipment		22,549			22,860
Other non-current assets		225			280
Total assets	$	52,428		$	63,327
Liabilities and stockholders’ equity
Current liabilities:
Accounts payable	$	959		$	929
Accrued expenses		3,058			2,891
Accrued compensation		1,764			1,950
Due to related parties		114			766
Current portion of financing lease obligations		372			364
Other current liabilities		45			45
Total current liabilities		6,312			6,945
Financing lease obligations		17,780			17,876
Long-term debt		1,518			1,518
Other non-current liabilities		1,213			113
Total liabilities		26,823			26,452
Stockholders’ equity:
Common stock, $0.0001 par value; 275,000,000 shares authorized; 37,263,339 shares issued and 37,163,187 shares outstanding as of March 31, 2021, and 37,165,196 shares issued and 37,065,044 shares outstanding as of December 31, 2020		4			4
Additional paid-in capital		203,565			204,807
Common stock in treasury, at cost; 100,152 shares as of March 31, 2021, and December 31, 2020		(1,043	)		(1,043	)
Accumulated deficit		(176,921	)		(166,893	)
Total stockholders’ equity		25,605			36,875
Total liabilities and stockholders’ equity	$	52,428		$	63,327

	Three Months Ended March 31,
	2021			2020
Revenue	$	4,402		$	2,377
Cost of goods sold		6,745			3,884
Gross margin		(2,343	)		(1,507	)
Operating expenses:
Research and development		3,050			2,787
Selling, general, and administrative		4,258			6,298
Management fees and royalties		30			62
Total operating expenses		7,338			9,147
Loss from operations		(9,681	)		(10,654	)
Interest, net		(346	)		(398	)
Non-operating expenses		(1	)		(11	)
Loss before income taxes		(10,028	)		(11,063	)
Income taxes		0			0
Net loss	$	(10,028	)	$	(11,063	)
Basic and diluted net loss per share	$	(0.27	)	$	(0.34	)
Weighted average shares outstanding - basic and diluted		37,136,338			32,988,141
Anti-dilutive stock options, restricted stock units, and performance stock units		5,013,780			5,328,268

Three months ended March 31, 2021	Shares Outstanding			Common Stock		Additional Paid-In Capital			Shares in Treasury			Accumulated Deficit			Accumulated Other Comprehensive Income			Total Stockholders’ Equity
Balance at December 31, 2020		37,065,044		$	4	$	204,807		$	(1,043	)	$	(166,893	)	$	—		$	36,875
Net loss		—			—		—			—			(10,028	)		—			(10,028	)
Stock-based compensation		—			—		(1,450	)		—			—			—			(1,450	)
Issuance of common stock		98,143			—		208			—			—			—			208
Shares withheld for net share settlement		—			—		—			—			—			—			—
Balance at March 31, 2021		37,163,187		$	4	$	203,565		$	(1,043	)	$	(176,921	)	$	-		$	25,605

Three months ended March 31, 2020	Shares Outstanding			Common Stock		Additional Paid-In Capital			Shares in Treasury			Accumulated Deficit			Accumulated Other Comprehensive Income (Loss)			Total Stockholders’ Equity
Balance at December 31, 2019		32,951,329		$	3	$	185,588		$	(1,043	)	$	(122,057	)	$	17		$	62,508
Net loss		—			—		—			—			(11,063	)		—			(11,063	)
Stock-based compensation		—			—		1,271			—			—			—			1,271
Issuance of common stock		57,110			—		—			—			—			—			—
Shares withheld for net share settlement		(17,792	)		—		—			—			—			—			—
Other comprehensive loss		—			—		—			—			—			(180	)		(180	)
Balance at March 31, 2020		32,990,647		$	3	$	186,859		$	(1,043	)	$	(133,120	)	$	(163	)	$	52,536

	March 31, 2021								March 31, 2021
	Fair Values of Assets								Fair Values of Liabilities
In Thousands	Level 1		Level 2		Level 3		Total		Level 1		Level 2		Level 3		Total
Other items reported at fair value:
Short-term investments	$	3,045	$	—	$	—	$	3,045	$	—	$	—	$	—	$	—
Commodity derivative contracts		266		—		—		266		—		—		—		—
Total	$	3,311	$	—	$	—	$	3,311	$	—	$	—	$	—	$	—

	December 31, 2020								December 31, 2020
	Fair Values of Assets								Fair Values of Liabilities
In Thousands	Level 1		Level 2		Level 3		Total		Level 1		Level 2		Level 3		Total
Other items reported at fair value:
Short-term investments	$	11,698	$	—	$	—	$	11,698	$	—	$	—	$	—	$	—
Commodity derivative contracts		467		—		—		467		—		—		—		—
Total	$	12,165	$	—	$	—	$	12,165	$	—	$	—	$	—	$	—

	As of March 31,		As of December 31,
In Thousands	2021		2020
Corporate debt securities	$	3,045	$	11,698

	Options Exercisable		Weighted- Average Exercise Price Per Share		Options Outstanding			Weighted- Average Exercise Price Per Share
Balance as of December 31, 2020		2,347,663	$	10.15		4,621,173		$	10.30
Granted						270,800			8.07
Exercised						(56,372	)		3.71
Forfeited or expired						(456,450	)		10.03
Balance as of March 31, 2021		2,369,997	$	10.38		4,379,151		$	10.27

	Number of Restricted Stock Units Outstanding			Weighted- Average Grant Date Fair Value
Unvested balance at December 31, 2020		547,807		$	9.49
Granted		68,000			8.05
Vested		(27,386	)		9.18
Forfeited		(126,178	)		12.89
Unvested balance at March 31, 2021		462,243		$	8.37

~~Exhibit~~ ~~Number~~	~~Description~~
~~3.1~~ Exhibit Number	Description

3.1	Amended and Restated Certificate of Incorporation (incorporated by reference to Exhibit 3.1 to the Company’s Quarterly Report on Form 10-Q filed with the SEC on September 1, 2017)
~~3.2~~
3.2	Amended and Restated Bylaws (incorporated by reference to Exhibit 3.2 of the Company’s Quarterly Report on Form 10-Q filed with the SEC on May 7, 2018)
~~10.1†~~
4.1	Form of ~~Calyxt, Inc. 2021 Short Term Incentive Plan~~Pre-Funded Warrant (incorporated by reference to Exhibit 4.1 to the Company’s Current Report on Form 8-K filed with the SEC on February 23, 2022)

4.2	Form of Common Warrant (incorporated by reference to Exhibit 4.2 to the Company’s Current Report on Form 8-K filed with the SEC on February 23, 2022)

10.1†	Form of Performance Stock Unit Agreement (incorporated by reference to Exhibit 10.1 of the Company’s Current Report on Form 8-K filed with the SEC on March ~~18, 2021)~~28, 2022)
~~10.2†~~
10.2*†	Calyxt, Inc. ~~2021 Executive Severance~~2022 Short Term Incentive Plan ~~(incorporated by reference to Exhibit 10.2 of the Company’s Current Report on Form 8-K filed with the SEC on March 18, 2021)~~
~~10.3*†~~		~~Notice of Compensation to Executive Chair of the Board, dated March 18, 2021~~
~~10.4†~~ 31.1	~~Separation Agreement between Calyxt, Inc. and James Blome, dated March 18, 2021~~
~~10.5*†~~	~~Employment Agreement between Calyxt, Inc. and Ms. Sarah Reiter, dated October 13, 2020~~
31.1*	Certification of the Chief Executive Officer Pursuant to Rules 13a-14(a) and 15d-14(a) of the Exchange Act
31.2*
31.2*	Certification of the Chief Financial Officer Pursuant to Rules 13a-14(a) and 15d-14(a) of the Exchange Act
32*
32*	Certification of the Chief Executive Officer and Chief Financial Officer Pursuant to 18 U.S.C. Section 1350, as adopted Pursuant to Section 906 of the Sarbanes-Oxley Act of 2002
101.INS*
101.INS*	Inline XBRL Instance Document
101.SCH*
101.SCH*	Inline XBRL Taxonomy Extension Schema Document
101.CAL*
101.CAL*	Inline XBRL Taxonomy Extension Calculation Linkbase Document
101.DEF*
101.DEF*	Inline XBRL Taxonomy Extension Definition Linkbase Document
101.LAB*
101.LAB*	Inline XBRL Taxonomy Extension Label Linkbase Document
101.PRE*
101.PRE*	Inline XBRL Taxonomy Extension Presentation Linkbase Document
104*
104*	The cover page for the Company’s Quarterly Report on Form 10-Q for the quarter ended March 31, ~~2021,~~2022, has been formatted in Inline ~~IXBRL~~	XBRL