UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549
FORM 10-Q

(Mark One)
þQUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended September 30, 2017March 31, 2020

OR
oTRANSITION REPORT UNDERPURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934For the transition period from _____ to _____


Commission file number: 001-31822
ACCELERATE DIAGNOSTICS, INC.
(Exact name of registrant as specified in its charter)
Delaware84-1072256
(State or other jurisdiction(I.R.S. Employer Identification No.)
of incorporation or organization)
3950 South Country Club Road,Suite 470
Tucson, ArizonaArizona85714
(Address of principal executive offices)(Zip Code)


(520) 365-3100
(Registrant’s telephone number, including area code)


N/A
(Former name, former address and former fiscal year, if changed since last report)

Securities registered pursuant to Section 12(b) of the Act:
Title of each classTrading SymbolName of each exchange on which registered
Common Stock, $0.001 parAXDXThe Nasdaq Stock Market LLC
value per share(The Nasdaq Capital Market)

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. þ Yes oNo


Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T (§232.405 of this chapter) during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files). þ Yes oNo


Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company, or an emerging growth company. See the definitions of “large accelerated filer,” “accelerated filer,” “smaller reporting company,” and “emerging growth company” in Rule 12b-2 of the Exchange Act.


Large accelerated filero
Accelerated filerþ
Non-accelerated filefiler
o (Do not check if a smaller reporting company)
Smaller reporting companyo
Emerging growth companyo


If an emerging growth company, indicate by check mark if the registrant has elected not to use the extended transition period for complying with any new or revised financial accounting standards provided pursuant to Section 13(a) of the Exchange Act. o


Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act). oYes þNo


As of November 1, 2017May 5, 2020, there were 55,397,56355,270,568 shares of the registrant’s common stock outstanding.





TABLE OF CONTENTS





2

PART I - FINANCIAL INFORMATION


Item 1. Financial Statements


ACCELERATE DIAGNOSTICS, INC.
CONDENSED CONSOLIDATED
BALANCE SHEET
Unaudited
(in thousands)thousands, except share data)
March 31,December 31,
20202019
Unaudited
ASSETS
Current assets:
Cash and cash equivalents$39,487  $61,014  
Investments52,525  47,437  
Trade accounts receivable3,143  3,222  
Inventory8,527  8,059  
Prepaid expenses1,771  955  
Other current assets1,291  1,165  
Total current assets106,744  121,852  
Property and equipment, net8,639  7,905  
Right of use assets3,742  3,917  
Other non-current assets868  750  
Total assets$119,993  $134,424  
LIABILITIES AND STOCKHOLDERS EQUITY
Current liabilities:
Accounts payable$3,401  $2,351  
Accrued liabilities2,428  3,828  
Accrued interest191  1,262  
Deferred revenue186  271  
Current operating lease liability453  450  
Total current liabilities6,659  8,162  
Non-current operating lease liability3,466  3,579  
Other non-current liabilities93  19  
Convertible notes132,717  130,043  
Total liabilities$142,935  $141,803  
Commitments and contingencies
Stockholders’ deficit:
Preferred shares, $0.001 par value;
5,000,000 preferred shares authorized and NaN outstanding as of March 31, 2020 and December 31, 2019—  —  
Common stock, $0.001 par value;
85,000,000 common shares authorized with 54,993,588 shares issued and outstanding on March 31, 2020 and 85,000,000 common shares authorized with 54,708,792 shares issued and outstanding on December 31, 201955  55  
Contributed capital457,987  452,344  
Treasury stock(45,067) (45,067) 
Accumulated deficit(436,067) (414,653) 
Accumulated other comprehensive income (loss)150  (58) 
Total stockholders’ deficit(22,942) (7,379) 
Total liabilities and stockholders’ deficit$119,993  $134,424  
 September 30,December 31,
 20172016
ASSETS
Current assets:  
Cash and cash equivalents$34,431
$19,244
Investments86,889
58,519
Trade accounts receivable1,111
34
Inventory7,341

Prepaid expenses1,048
468
Other current assets460
183
Total current assets131,280
78,448
Property and equipment, net4,690
4,258
Intellectual property, net137
146
Total assets$136,107
$82,852
   
LIABILITIES AND STOCKHOLDERS EQUITY
Current liabilities:  
Accounts payable$1,369
$992
Accrued liabilities3,733
3,009
Deferred revenue and income1,081
35
Total current liabilities6,183
4,036
Long-term deferred income
1,000
Total liabilities$6,183
$5,036
   
Commitments and contingencies see Note 16, Commitments



   
Stockholders’ equity:  
Common stock, $0.001 par value;  
75,000,000 common shares authorized with 55,397,563 shares issued and outstanding on September 30, 2017 and 75,000,000 authorized with 51,516,309 shares issued and outstanding on December 31, 201655
52
Preferred shares, $0.001 par value;  
5,000,000 preferred shares authorized and none outstanding as of September 30, 2017 and December 31, 2016

Contributed capital355,458
255,257
Accumulated deficit(225,676)(177,289)
Accumulated other comprehensive (loss)87
(204)
Total stockholders’ equity129,924
77,816
Total liabilities and stockholders’ equity$136,107
$82,852

See accompanying notes to condensed consolidated financial statements.

3



ACCELERATE DIAGNOSTICS, INC.
CONDENSED CONSOLIDATED
STATEMENTS OF OPERATIONS AND COMPREHENSIVE LOSS
Unaudited
(in thousands, except per share data)
Three Months Ended Nine Months EndedThree Months Ended
September 30, September 30,March 31,
20172016 2017201620202019
Net sales$828
$24
 $2,058
$207
Net sales$2,342  $1,750  
   
Cost of sales191

 352

Cost of sales1,287  916  
Gross Profit637
24
 1,706
207
Gross profitGross profit1,055  834  
   
Costs and expenses:   Costs and expenses:
Research and development6,351
7,874
 16,166
23,974
Research and development5,842  6,933  
Sales, general and administrative11,601
9,566
 33,589
26,710
Sales, general and administrative12,943  12,723  
Total costs and expenses17,952
17,440
 49,755
50,684
Total costs and expenses18,785  19,656  
   
Loss from operations(17,315)(17,416) (48,049)(50,477)Loss from operations(17,730) (18,822) 
   
Interest expense and other2

 (3)
Other income (expense):Other income (expense):
Interest expenseInterest expense(3,749) (3,459) 
Foreign currency exchange loss(40)(42) (73)(115)Foreign currency exchange loss(128) (59) 
Interest and dividend income323
159
 612
353
Total other income285
117
 536
238
Interest incomeInterest income380  842  
Other expense, netOther expense, net(82) (2) 
Total other expense, netTotal other expense, net(3,579) (2,678) 
   
Net loss before income taxes(17,030)(17,299) (47,513)(50,239)Net loss before income taxes(21,309) (21,500) 
Provision from income taxes(45)
 (220)
Provision for income taxesProvision for income taxes—  (221) 
Net loss$(17,075)$(17,299) $(47,733)$(50,239)Net loss$(21,309) $(21,721) 
   
Basic and diluted net loss per share$(0.31)$(0.34) $(0.89)$(0.98)Basic and diluted net loss per share$(0.39) $(0.40) 
Weighted average shares outstanding55,316
51,239
 53,603
51,216
Weighted average shares outstanding54,837  54,337  
   
Other comprehensive loss:   Other comprehensive loss:
Net loss$(17,075)$(17,299) $(47,733)$(50,239)Net loss$(21,309) $(21,721) 
Net unrealized gain loss on available-for-sale investments(7)(70) (4)11
Net unrealized gain on debt securities available-for-saleNet unrealized gain on debt securities available-for-sale223  121  
Foreign currency translation adjustment91
(8) 295
(8)Foreign currency translation adjustment(15) (76) 
Comprehensive loss$(16,991)$(17,377) $(47,442)$(50,236)Comprehensive loss$(21,101) $(21,676) 


See accompanying notes to condensed consolidated financial statements.

4




ACCELERATE DIAGNOSTICS, INC.
CONDENSED CONSOLIDATED
STATEMENTSTATEMENTS OF CASH FLOWS
Unaudited
(in thousands)
Nine Months EndedThree Months Ended
September 30,March 31,
2017201620202019
Cash flows from operating activities: Cash flows from operating activities:
Net loss$(47,733)$(50,239)Net loss$(21,309) $(21,721) 
Adjustments to reconcile net loss to net cash used in operating activities:



Adjustments to reconcile net loss to net cash used in operating activities:
Depreciation1,595
1,745
Amortization of intangible assets9
8
Depreciation and amortizationDepreciation and amortization755  626  
Amortization of investment discount298
251
Amortization of investment discount(4) (180) 
Equity-based compensation10,970
6,591
Equity-based compensation4,199  3,397  
Realized (gain) on sale of investments
(6)
Loss on disposal of property & equipment3

Provision for bad debt expenseProvision for bad debt expense —  
Amortization of debt discount and issuance costsAmortization of debt discount and issuance costs2,674  2,387  
Unrealized loss on equity investmentsUnrealized loss on equity investments —  
Realized loss (gain) on sale of investmentsRealized loss (gain) on sale of investments (2) 
Loss on disposal of property and equipmentLoss on disposal of property and equipment432  329  
(Increase) decrease in assets:



(Increase) decrease in assets:
Accounts receivable(1,077)(82)Accounts receivable(9) (90) 
Inventory(7,079)
Inventory(1,735) (1,567) 
Prepaid expense and other(392)525
Prepaid expense and other(1,030) (1,041) 
Other current assets(277)(90)
Increase (decrease) in liabilities:



Increase (decrease) in liabilities:
Accounts payable359
103
Accounts payable968  1,151  
Accrued liabilities780
670
Accrued liabilities, and otherAccrued liabilities, and other(1,475) (1,790) 
Accrued interestAccrued interest(1,071) (1,071) 
Deferred revenue and income46
(83)Deferred revenue and income(85) 74  
Deferred compensationDeferred compensation74  (7) 
Net cash used in operating activities(42,498)(40,607)Net cash used in operating activities(17,597) (19,505) 
Cash flows from investing activities: Cash flows from investing activities:
Purchases of equipment(2,055)(2,301)Purchases of equipment(438) (37) 
Purchases of available-for-sale securities(68,423)(73,585)
Sales of available-for-sale securities9,522
8,716
Maturity of available-for-sale securities30,049
14,955
Net cash used in investing activities(30,907)(52,215)
Purchase of marketable securitiesPurchase of marketable securities(21,582) (12,826) 
Proceeds from sales of marketable securitiesProceeds from sales of marketable securities—  9,000  
Maturities of marketable securitiesMaturities of marketable securities16,664  28,662  
Net cash (used in) provided by investing activitiesNet cash (used in) provided by investing activities(5,356) 24,799  
Cash flows from financing activities: Cash flows from financing activities:
Issuance of common stock net issuance costs83,741
80
Exercise of options and warrants4,562
864
Common stock issuance costs
(814)
Payments on capital lease obligations
(13)
Recovery of related party short-swing profits
866
Proceeds from issuance of common stockProceeds from issuance of common stock111  139  
Proceeds from exercise of optionsProceeds from exercise of options1,318  3,677  
Net cash provided by financing activities88,303
983
Net cash provided by financing activities1,429  3,816  
 
Effect of exchange rate on cash:289
(15)
Effect of exchange rate on cashEffect of exchange rate on cash(3) (61) 
 
Increase (decrease) in cash and cash equivalents15,187
(91,854)
(Decrease) increase in cash and cash equivalents(Decrease) increase in cash and cash equivalents(21,527) 9,049  
Cash and cash equivalents, beginning of period19,244
120,585
Cash and cash equivalents, beginning of period61,014  66,260  
Cash and cash equivalents, end of period$34,431
$28,731
Cash and cash equivalents, end of period$39,487  $75,309  


See accompanying notes to condensed consolidated financial statements.

5





ACCELERATE DIAGNOSTICS, INC.
CONDENSED CONSOLIDATED
STATEMENTS OF CASH FLOWS (CONTINUED)
Unaudited
(in thousands)
Three Months Ended
March 31,March 31,
20202019
Non-cash investing activities:
Transfer of instruments from inventory to property and equipment$1,282  $769  
Supplemental cash flow information:
Interest paid$2,144  $2,144  
Income taxes paid, net of refunds$26  $ 

See accompanying notes to condensed consolidated financial statements.
6


ACCELERATE DIAGNOSTICS, INC.
CONDENSED CONSOLIDATED
STATEMENTS OF STOCKHOLDERS' EQUITY (DEFICIT)
Unaudited
(in thousands)
Three Months Ended
March 31,
20202019
Common stock shares outstanding
Beginning54,709  54,232  
Exercise of options270  215  
Issuance of common stock under employee purchase plan15   
Ending54,994  54,454  
Common stock
Beginning$55  $54  
Ending$55  $54  
Contributed capital
Beginning$452,344  $432,885  
Exercise of options1,318  3,677  
Issuance of common stock under employee purchase plan111  139  
Equity based compensation4,214  3,453  
Ending$457,987  $440,154  

See accompanying notes to consolidated financial statements.
7



ACCELERATE DIAGNOSTICS, INC.
CONDENSED CONSOLIDATED
STATEMENTS OF STOCKHOLDERS' EQUITY (DEFICIT) (CONTINUED)
Unaudited
(in thousands)
Three Months Ended
March 31,
20202019
Accumulated deficit
Beginning$(414,653) $(330,348) 
Cumulative effect of accounting changes(105) —  
Net loss(21,309) (21,721) 
Ending$(436,067) $(352,069) 
Treasury stock
Beginning$(45,067) $(45,067) 
Ending$(45,067) $(45,067) 
Accumulated other comprehensive (loss) income
Beginning$(58) $(149) 
Net unrealized gain on debt securities available-for-sale223  121  
Foreign currency translation adjustment(15) (76) 
Ending$150  $(104) 
Total stockholders' equity (deficit)$(22,942) $42,968  

See accompanying notes to consolidated financial statements.

8


ACCELERATE DIAGNOSTICS, INC.
NOTES TO THE CONDENSED CONSOLIDATED FINANCIAL STATEMENTS
Unaudited


NOTE 1. ORGANIZATION AND NATURE OF BUSINESS; BASIS OF PRESENTATION; PRINCIPLES OF CONSOLIDATION; SIGNIFICANT ACCOUNTING POLICIES


Accelerate Diagnostics, Inc. (“we” or “us” or “our” or “Accelerate” or “the Company”the “Company”) is an in vitro diagnostics company dedicated to providing solutions whichthat improve patient outcomes and lower healthcare costs through the rapid diagnosis of serious infections.


Basis of Presentation


The accompanying unaudited condensed consolidated financial statements have been prepared in accordance with U.S. Generally Accepted Accounting Principles (“U.S. GAAP”) and applicable rules and regulations of the United States Securities and Exchange Commission (“SEC”) regarding interim financial reporting. Certain information and note disclosures normally included in financial statements prepared in accordance with U.S. GAAP have been condensed or omitted pursuant to such rules and regulations. Therefore, these condensed consolidated financial statements should be read in conjunction with the condensed consolidated financial statements and notes included in our Annual Report on Form 10-K for the fiscal year ended December 31, 2016,2019, as filed with the SEC on February 28, 2017.2020.


The condensed consolidated balance sheet as of December 31, 20162019 included herein was derived from the audited financial statements as of that date, but does not include all disclosures such as notes required by U.S. GAAP.


The accompanying unaudited condensed consolidated financial statements reflect all normal recurring adjustments necessary to present fairly the financial position, results of operations, and cash flows for the interim periods presented, but are not necessarily indicative of the results of operations to be anticipated for the entire year ending December 31, 2017,2020, or any future period.


All amounts are rounded to the nearest thousand dollars unless otherwise indicated.

Use of Estimates

The preparation of financial statements in conformity with U.S. GAAP requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities as of the date of the financial statements and the reported amounts of revenues and expenses during the reporting period. Actual results could differ from those estimates.


Principles of Consolidation


The condensed consolidated financial statements include the accounts of the Company and its wholly-owned subsidiaries after elimination of intercompany transactions and balances.


Use of Estimates

The preparation of the Company’s condensed consolidated financial statements requires the Company to make estimates and assumptions that affect the reported amounts of assets and liabilities and the related disclosure of contingent assets and liabilities at the date of the condensed consolidated financial statements and the reported amounts of revenues and expenses during the reporting period. The more significant areas requiring the use of management estimates and assumptions relate to accounts receivable, inventory, property and equipment, accrued liabilities, warranty liabilities, tax valuation accounts and equity–based compensation. Actual results could differ materially from those estimates.

Estimated Fair Value of Financial Instruments

The Company follows Accounting Standards Codification (“ASC”) 820, Fair Value Measurement, which has defined fair value and requires the Company to establish a framework for measuring and disclosing fair value. The framework requires the valuation of assets and liabilities subject to fair value measurements using a three tiered approach and fair value measurement be classified and disclosed in one of the following three categories:

Level 1: Unadjusted quoted prices in active markets that are accessible at the measurement date for identical, unrestricted assets or liabilities;

9


Level 2: Quoted prices for similar assets and liabilities in active markets, quoted prices in markets that are not active, or inputs that are observable, either directly or indirectly, for substantially the full term of the asset or liability;

Level 3: Prices or valuation techniques that require inputs that are both significant to the fair value measurement and unobservable (i.e. supported by little or no market activity).

The carrying amounts of financial instruments such as cash and cash equivalents, trade accounts receivable, prepaid expenses, other current assets, accounts payable, accrued liabilities, and other current liabilities approximate the related fair values due to the short-term maturities of these instruments.

The estimated fair value of the Company’s long-term debt represents a Level 2 measurement. See Note 10, Convertible Notes for further detail on the Company’s long-term debt.

Cash and Cash Equivalents


All highly liquid investments with an original maturity of three months or less at time of purchase are considered to be cash equivalents. Cash and cash equivalents include overnight repurchase agreement accounts and other investments. As part of our cash management process, excess operating cash is invested in overnight repurchase agreements with our bank. Repurchase agreements and other investments classified as cash and cash equivalents are not deposits and are not insured by the U.S. Government, the FDIC or any other government agency and involve investment risk including possible loss of principal. We believe, however, that the market risk arising from holding these financial instruments is minimal.


Investments


The Company invests excess funds in various investmentsdebt securities available-for-sale and equity securities which are primarily held in the custody of major financial institutions. InvestmentsDebt securities available-for-sale consist of debt securities incertificates of deposit, U.S. government and agency securities, corporate debtcommercial paper, asset-backed securities, and certificatescorporate notes and bonds. Equity securities consist of deposit.mutual funds. Management classifies its investments as available-for-sale investments and


records these investments in the condensed consolidated balance sheet at fair value. Unrealized gains or losses for debt securities available-for-sale are included in accumulated other comprehensive income (loss), a component of stockholders’ equity. Unrealized gains or losses for equity securities are included in other expense, net, a component of statements of operations and comprehensive loss. The Company considers all debt securities available-for-sale, securities, including those with maturity dates beyond 12 months, as available to support current operational liquidity needs. Unrealized gains or losses for available-for-sale securities are included in accumulated other comprehensive income or loss, a component of stockholders’ equity. The Company classifies its investments as current based on the nature of the investments and their availability for use in current operations.


The Company assessesOn a quarterly basis, we perform an assessment to determine whether there have been any events or economic circumstances to indicate that a debt security available-for-sale in an other-than-temporaryunrealized loss position has suffered impairment as a result of credit loss has occurred due to declines inor other factors. A debt security available-for-sale is considered impaired if its fair value or other market conditions when an investment’s fair value remainsis less than its cost for more than twelve months. This assessment includes a determination of whether the investment is expected to recover in value and whether the Company has the intent and ability to hold the investment until the anticipated recovery in value occurs. When an investment is identified as having an other-than-temporary impairment loss, we adjust theamortized cost basis at the reporting date.

If we intend to sell the debt security or if it is more-likely-than-not that we will be required to sell the debt security before the recovery of its amortized cost basis, the impairment is recognized and the unrealized loss is recorded as a direct write-down of the investment down to fair value resulting in a realized loss. The newsecurity's amortized cost basis with an offsetting entry to earnings. If we do not intend to sell the debt security or believe we will not be required to sell the debt security before the recovery of its amortized cost basis, the impairment is not changed for subsequent recoveries in fair value and temporary future increases or decreases in fair value are included in other comprehensive income.

Reclassification

Certain prior year amounts have been reclassified for consistency withassessed to determine if a credit loss component exists. We use a discounted cash flow method to determine the current year presentation and had no effect on our net income, stockholders’ equity or cash flows.credit loss component. In the current period presentation andevent a credit loss exists, an allowance for credit losses is recorded in earnings for the revised prior period presentation, depreciation and amortization expenses are reported as acredit loss component of the individual costs and expenses as partimpairment while the remaining portion of the condensed consolidated statementsimpairment attributable to factors other than credit loss is recognized, net of operations andtax, in accumulated other comprehensive loss.income (loss). The amount of depreciation and amortization expenses now reported as a component of research and development costs forimpairment recognized due to credit factors is limited to the three months endedSeptember 30, 2017 and 2016 were $303,000 and $342,000, respectively, and for the nine months endedSeptember 30, 2017 and 2016 were $1,086,000 and $1,026,000, respectively. The amount of depreciation and amortization expenses now reported as a component of sales, general and administrative costs for the three months endedSeptember 30, 2017 and 2016 were $168,000 and $259,000, respectively, and for the nine months endedSeptember 30, 2017 and 2016 were $435,000 and $727,000, respectively.

In the current and revised prior period presentation, product sales and licensing and royalty revenues are reported as net sales as partexcess of the condensed consolidated statementsamortized cost basis over the fair value of operations and comprehensive loss. The amounts that have been reclassified had no effect on our net income, stockholders’ equity or cash flows.the security available-for-sale.


Inventory


Inventory is stated at the lesser of cost or net realizable value, with cost determined on the first-in-first-out method. The allocation of production overhead to inventory costs is based on normal production capacity. Abnormal amounts of idle facility expense and spoilage are expensed as incurred and not included in overhead subject to capitalization. The Company maintains provisions for excess and obsolete inventory based on management’s estimates of forecasted demand and, where applicable, product expiration. The Company adopted Accounting Standards Update (“ASU”) 2015-11, Simplifying the Measurement of Inventory (Topic 310) Inventory on January 1, 2017. This ASU simplifies the subsequent measurement of inventory by using only the lower of cost or net realizable value. The adoption did not have an effectCompany determines the cost of inventory using the first-in, first out method. The Company estimates the recoverability of inventory by reference to internal estimates of future demands and product life cycles, including expiration. The Company periodically
10


analyzes its inventory levels to identify inventory that may expire prior to expected sale or has a cost basis in excess of its estimated realizable value and records a charge to expense for such inventory as appropriate.

Accounts Receivable

Accounts receivable consist of amounts due to the Company for sales to customers and are based on what we expect to collect in exchange for goods and services. Receivables are considered past due based on the Company’scontractual payment terms and are written off if reasonable collection efforts prove unsuccessful.

We maintain an allowance for credit losses for expected uncollectible accounts receivable, which is recorded as an offset to accounts receivable and changes in such are classified as general and administrative expense in the condensed consolidated financial statements.statements of operations. We assess collectibility by reviewing accounts receivable on a collective basis where similar characteristics exist and on an individual basis when we identify specific customers with known disputes or collectibility issues. In determining the amount of the allowance for credit losses, we consider historical collectibility and make judgments about the creditworthiness of customers based on credit evaluations. We also consider customer-specific information, current market conditions and reasonable and supportable forecasts of future economic conditions to inform adjustments to historical loss data. The allowance for credit losses as of March 31, 2020 was $110,000.


Property and Equipment


Property and equipment are recorded at cost. Maintenance and repairs are charged to expense as incurred and expenditures for major improvements are capitalized. Gains and losses from retirement or replacement are included in costs and expenses. Depreciation of property and equipment is computed using the straight-line method over the estimated useful life of the assets, ranging from greater than one year to seven years. Leasehold improvements are depreciated over the remaining life of the lease or the life of the asset, whichever is less.


Instruments Classified as Property and Equipment

Property and equipment includes diagnosticAccelerate Pheno systems (also referred to as instruments) used for sales demonstrations, instruments under rental agreements and instruments used for research and development. Depreciation expense for instruments used for sales demonstrations is recorded as a component of sales, general and administrative expense. Depreciation expense for instruments underplaced at customer sites pursuant to reagent rental agreements.agreements is recorded as a component of cost of sales. Depreciation expense for instruments used in our laboratory and research is recorded as a component of research and development expense. The Company retains title to these instruments and depreciates them over five years. Losses from the retirement of returned instruments are included in costs and expenses.

The Company evaluates the recoverability of the carrying amount of its instruments whenever events or changes in circumstances indicate that the carrying amount of the assets may not be recoverable, this evaluation is performed at least annually. This evaluation is based on our estimate of future cash flows and the estimated fair value of such long-lived assets, and provides for impairment if such undiscounted cash flows or the estimated fair value are insufficient to recover the carrying amount of instruments. No impairment charges have been recorded as of March 31, 2020 and December 31, 2019.

Long-lived Assets

Long-lived assets and certain identifiable intangibles to be held and used by the Company are reviewed for impairment whenever events or changes in circumstances indicate that the carrying amount of an asset may not be recoverable. The Company continuously evaluates the recoverability of its long-lived assets based on estimated future cash flows from and the estimated fair value of such long-lived assets, and provides for impairment if such undiscounted cash flows or the estimated fair value are insufficient to recover the carrying amount of the long-lived asset.

Warranty Reserve

Instruments are typically sold with a one year limited warranty, while kits and accessories are typically sold with a sixty days limited warranty. Accordingly, a provision for the estimated cost of the limited warranty repair is recorded at the time revenue is recognized. Our estimated warranty provision is based on our estimate of future
11


repair events and the related estimated cost of repairs. The Company periodically assesses the adequacy of the warranty reserve and adjusts the amount as necessary. The expense incurred for these provisions is included in cost of sales on the condensed consolidated statements of operations and comprehensive loss.

Warranty reserve activity for the three months ended March 31, 2020 and 2019 is as follows (in thousands):

Three Months Ended March 31,
20202019
Beginning balance$403  $215  
Provisions 70  
Warranty cost incurred(62) (79) 
Ending balance$342  $206  

Convertible Notes

We account for convertible debt instruments that may be settled in cash or equity upon conversion, which includes our 2.50% Senior Convertible Notes due 2023 (the “Notes”), by separating the liability and equity components of the instruments under these arrangements.in a manner that reflects our nonconvertible debt borrowing rate. We determined the carrying amount of the liability component of the Notes by using estimates and assumptions that market participants would use in pricing a debt instrument. These estimates and assumptions are judgmental in nature and could have a significant impact on the determination of the debt component, and the associated non-cash interest expense.


The equity component is treated as a discount on the liability component of the Notes, which is amortized over the term of the Notes using the effective interest rate method. Debt issuance costs related to the Notes are allocated to the liability and equity components of the Notes based on their relative values. Debt issuance costs allocated to the liability component are amortized over the life of the Notes as additional non-cash interest expense. Transaction costs allocated to equity are netted with the equity component of the convertible debt instrument in stockholders’ deficit.

Revenue Recognition


The Company recognizes revenue when control of the promised good or service is transferred to our customers in accordancean amount that reflects the consideration we expect to be entitled to in exchange for those goods or services. Sales taxes are excluded from revenues.

We determine revenue recognition through the following steps:

Identification of the contract with ASC 605, Revenue Recognition, when persuasive evidencea customer

Identification of an arrangement exists, the price is fixed or determinable, collection is reasonably assured and delivery of products has occurred or services have been rendered. Additional considerations include whether the applicable fee arrangement contains future delivery or performance obligations that should be divided into separate accountingin the contract



units, whether the arrangement requires the Company to retain risks consistent with a collaborative arrangement, and/or whether anyDetermination of the fees are contingent ontransaction price

Allocation of the achievementtransaction price to the performance obligations

Recognition of future milestones.revenue as we satisfy a performance obligation


Product revenue is derived from the sale or rental of our instruments and sales of related consumable products. When an instrument is sold, revenue is generally recognized upon installation of the unit consistent with contract terms, which do not include a right of return. When a consumable product is sold, revenue is generally recognized upon shipment. Invoices are generally issued when revenue is recognized and the term between invoicing and when payment is due is not typically significant.


Service revenue is derived from the sale of extended service agreements which are generally non-cancellable. This revenue is recognized on a straight-line basis over the contract term beginning on the effective
12


date of the contract because the Company is standing ready to provide services. Invoices are generally issued annually and coincide with the beginning of individual service terms.

Our contracts with customers may include multiple performance obligations. For such arrangements, we allocate revenue to each performance obligation based on its relative standalone selling price. We also provide instrumentsgenerally determine relative standalone selling prices based on the price charged to customers under bundled rental agreements. Underfor each individual performance obligation.

Sales commissions earned by our sales force are considered incremental and recoverable costs of obtaining a contract with a customer. The Company has determined these agreements, we installcosts would have an amortization period of less than one year and has elected to recognize them as an expense when incurred. Contract asset opening and closing balances were immaterial for the instrument in the customer’sthree months ended March 31, 2020.

Cost of Sales

Cost of sales includes cost of materials, direct labor, equity-based compensation, facility and provide service.other manufacturing overhead costs for consumable tests and instruments sold to customers. Cost of sales for instruments also includes depreciation on revenue generating instruments that have been placed with our customers under a reagent rental agreement. Cost of sales includes repair and maintenance cost for instruments covered by a service agreement or instruments covered by a reagent rental agreement. Cost of sales also includes warranty related expenses.

Shipping and Handling

Shipping and handling costs billed to customers are included as a component of revenue. The customer agrees to purchase consumable products at a stated price over the term of the agreement which is typically less than seven years. Contracts sometimes have renewal clauses but such clauses do not provide for a bargain renewal option or penalize the customer if they do not renew. The instrument remains the Company’s property throughout the term of the agreement and there is no transfer of title upon expiration. Revenue is recognized as consumable products are shipped or delivered, depending on contract terms.

For multiple element arrangements, the total consideration for an arrangement is allocated among the separate elements in the arrangement based on a selling price hierarchy. The selling price hierarchy for a deliverable is based on: (1) vendor specific objective evidence (“VSOE”), if available; (2)corresponding expense incurred with third party evidencecarriers is included as a component of selling price if VSOE is not available; or (3) an estimated selling price, if neither VSOE nor third party evidence is available. Estimated selling price is our best estimate of the selling price of an element in a transaction. The Company limits the amount of revenue recognized for delivered elements to the amount that is not contingentsales, general and administrative costs on the future deliverycondensed consolidated statements of products or services or other future performance obligations.operations and comprehensive loss. Most such billable shipping and handling costs are in connection with consumable test kits. Unlike for test kits, the Company typically pays for shipping and handling for instruments.


Leases


The Company accounts for commercial leases in accordance with ASC 840, Leases, which requires leases to be classified as either operating842, Leases. We determine if an arrangement is or capital leases. In general,contains a lease and the type of lease at inception. The Company classifies commercial leases as capitalfinance leases (lessee) or sales-type leases (lessor) when there is either a transfer of ownership atof the underlying asset by the end of the lease term, the lease contains a bargainan option to purchase option,the asset that we are reasonably certain will be exercised, the lease term is seventy-five percent or morefor the major part of the estimatedremaining economic life of the leased property orasset, the minimumpresent value of the lease payments are ninety percentand any residual value guarantee equals or more ofsubstantially exceeds all the fair value of the asset, or the asset is of such a specialized nature that it will have no alternative use to the lessor at the end of the lease inception. Otherterm. Payments contingent on future events (i.e. based on usage) are considered variable and excluded from lease payments for the purposes of classification and initial measurement. Several of our leases include options to renew or extend the term upon mutual agreement of the parties and others include one-year extensions exercisable by the lessee. None of our leases contain residual value guarantees, restrictions, or covenants.

To determine whether a contract contains a lease, the Company uses its judgment in assessing whether the lessor retains a material amount of economic benefit from an underlying asset, whether explicitly or implicitly identified, which party holds control over the direction and use of the asset, and whether any substantive substitution rights over the asset exist.

Lessee

Operating leases are classified asincluded in right-of-use (“ROU”) assets and operating leases.

Operating lease rent is recorded asliabilities within our consolidated balance sheets. These assets represent our right to use an operating expense monthly. For capital leases, both anunderlying asset and liability are recorded at the inception offor the lease term and lease liabilities represent our obligation to make lease payments arising from the lease. ROU assets and their related liabilities are recognized at commencement date based on the present value of lease payments. The asset is included with property and equipmentpayments over the lease term. Typically, we use our incremental borrowing rate based on the condensed consolidated balance sheetinformation available at commencement in determining the present value of lease payments. We use the implicit rate when readily determinable. ROU assets are net of lease payments made and amortizationexclude lease incentives. Lease expense for lease payments is recorded
13


recognized on a straight-line basis over the lease term, ofwhich may include options to extend or terminate the lease reportedwhen it is reasonably certain that we will exercise the option. As of March 31, 2020 and December 31, 2019, the Company was not party to finance lease arrangements.

Our operating leases consist primarily of leased office, factory, and laboratory space in the United States and office space in Europe, have between two and six-year terms, and typically contain penalizing, early-termination provisions.

Lessor

The Company leases instruments to customers under “reagent rental” agreements, whereby the customer agrees to purchase consumable products over a stated term, typically five years or less, for a volume-based price that includes an embedded rental for the instruments. When collectibility is probable, that amount is recognized as income at lease commencement for sales-type leases and as product is shipped, typically in a straight–line pattern, over the term for operating leases, which typically include a termination without cause or penalty provision given a short notice period.

Consideration is allocated between lease and non-lease components based on stand-alone selling price in accordance with ASC 606, Revenue from Contracts with Customers.

Net investment in sales-type leases are included within our condensed consolidated balance sheets as a component of other current assets and other non-current assets, which include the individual costspresent value of lease payments not yet received and expenses as partthe present value of the condensed consolidated statements of operations and comprehensive loss. Forresidual asset, which are determined using the liability,information available at commencement, including the amount due within the next year is recorded as capital lease obligations and the amount due in more than a year is recorded as long-term capital lease obligation on the condensed consolidated balance sheet. Interest expense is recorded based on theterm, estimated useful life, rate implicit or explicit interest rate used in the lease, and is included as non-operating interest expense onexpected fair value of the condensed consolidated statements of operations and comprehensive loss.instrument.


Equity-Based Compensation


The Company awardsmay award stock options, restricted stock units (“RSUs”), performance-based awards, and other equity-based instruments to its employees, directors and consultants. Compensation cost related to equity-based instruments is based on the fair value of the instrument on the grant date, and is recognized over the requisite service period on a straight-line basis over the vesting period for each tranche (an accelerated attribution method). For unvested consultant grants, except for performance-based awards. Performance-based awards vest based on the achievement of performance targets. Compensation costs associated with performance-based awards are recognized over the requisite service period based on probability of achievement. Performance-based awards require management to make assumptions are updated atregarding the endlikelihood of each reporting period until the grant is vested. achieving performance targets.

The Company estimates the fair value of service based and performance based stock option awards, including modifications of stock option awards, using the Black-Scholes option pricing model. This model derives the fair value of stock options based on certain assumptions related to expected stock price volatility, expected option life, risk-free interest rate and dividend yield.


Volatility: The expected volatility is based on the historical volatility of the Company’sCompany's stock price over the most recent period commensurate with the expected term of the stock option award.


Expected term: The estimated expected term for employee awards is based on the calculation published by the SEC in SAB110 for use when there is not a sufficient history of employee exercise patterns. For consultant awards, the estimated expected term is the same as the life of the award.




Risk-free interest rate: The risk-free interest rate is based on published U.S. Treasury rates for a term commensurate with the expected term.


Dividend yield: The dividend yield is estimated as zero0 as the Company has not paid dividends in the past and does not have any plans to pay any dividends in the foreseeable future.


The Company implemented ASU 2016-09, Compensation-Stock Compensation (Topic 718) Improvements to Employee Share-Based Payment Accountingrecords the fair value of RSUs or stock grants based on January 1, 2017. Pursuant to this guidance, we made a policy election to accountpublished closing market price on the day before the grant date. The Company accounts for forfeitures as they occur rather than on an estimated basis. For periods prior

14


Deferred Tax Assets

Deferred tax assets and liabilities are recorded for the estimated future tax effects of temporary differences between the tax basis of assets and liabilities and amounts reported in the accompanying balance sheets. The change in deferred tax assets and liabilities for the period represents the deferred tax provision or benefit for the period. Effects of changes in enacted tax laws in deferred tax assets and liabilities are reflected as an adjustment to the adoption of this ASU, the Company estimated the forfeiture rate of unvested awards based on the forfeiturestax provision or benefit in the previous twelve-month period. The rate was calculated separately for awards to the boardperiod of directors/executives and all other awards. Further information regarding this change is included in Note 14, Employee Equity-Based Compensation.enactment.


The Company also has an employee stock purchase program whereby eligible employees can elect payroll deductions that are subsequently usedfollows the provisions of ASC 740, Income Taxes, to purchase common stock at a discounted price. There is no compensation recordedaccount for this program as (i)any uncertainty in income taxes with respect to the purchase discount does not exceed the issuance costs that would have been incurred to raise a significant amount of capital by a public offering, (ii) substantiallyaccounting for all employees that meet limited employment qualifications may participate on an equitable basis, and (iii) the plan does not incorporate option features that would require compensationtax positions taken (or expected to be recorded.

See Note 14, Employee Equity-Based Compensation for further information.

Costtaken) on any income tax return. This guidance applies to all open tax periods in all tax jurisdictions in which the Company is required to file an income tax return. Under U.S. GAAP, in order to recognize an uncertain tax benefit, the taxpayer must be more likely than not certain of Sales

Cost of sales consists of raw materials, depreciation, direct laborsustaining the position, and stock-based compensation expense, manufacturing overhead, facility costs and warranty costs.

Warranty

Instruments are typically sold with a one year limited warranty, while kits and accessories are typically sold with a sixty days limited warranty. Accordingly, a provision for the estimated costmeasurement of the limited warranty repairbenefit is recorded atcalculated as the time revenuelargest amount that is recognized. Our estimated warranty provision is based on our estimate of future repair events and the related estimated cost of repairs. The Company periodically assesses the adequacymore likely than not to be realized upon resolution of the warranty reserveposition. Interest and adjusts the amount as necessary. The expense incurred for these provisions is included in cost of sales on the condensed consolidated statements of operations and comprehensive loss.penalties, if any, would be recorded within tax expense.

Shipping and Handling

Shipping and handling costs billed to customers are included as a component of revenue. The corresponding expense incurred with third party carriers is included as a component of sales, general and administrative costs on the condensed consolidated statements of operations and comprehensive loss.


Foreign Currency Translation and Foreign Currency Transactions


The Company follows ASC 830, Foreign Currency Matters, which provides guidance on foreign currency transactions and translation of financial statements. Adjustments resulting from translating foreign functional currency financial statements into U.S. dollarsDollars are included in the foreign currency translation adjustment, within the condensed consolidated statementsa component of operations andaccumulated other comprehensive loss.


The Company has assets and liabilities, primarilyincluding receivables and payables, which are denominated in currencies other than their functional currency. These balance sheet items are subject to re-measurement, the impact of which is recorded in foreign currency exchange gain orand loss, within the condensed consolidated statementsstatement of operations and comprehensive loss.




Loss Per Share

Basic loss per share includes no dilution and is computed by dividing loss available to common stockholders by the weighted average number of common shares outstanding for the period. Potentially dilutive common shares consist of shares issuable from stock options and unvested RSUs. Potentially dilutive common shares would also include common shares that would be outstanding if the Notes at the balance sheet date were converted. Diluted earnings are not presented when the effect of adding such additional common shares is antidilutive.

Comprehensive Loss

In addition to net loss, comprehensive loss includes all changes in equity during a period, except those resulting from investments by and distributions to owners. The Company holds investments classified as debt securities available-for-sale and records the change in fair market value as a component of comprehensive loss. The Company also has adjustments resulting from translating foreign functional currency financial statements into U.S. Dollars which is included as a component of comprehensive loss.

NOTE 2. RECENTLY ISSUED ACCOUNTING PRONOUNCEMENTS


Standards that were recently adopted

In May 2017,August 2018, the Financial Accounting Standards Board (“FASB”) issued ASU 2017-09, Compensation—Stock Compensation2018-13, Fair Value Measurement (Topic 718)Scope of Modification Accounting. This amendment clarifies when to account for a change820); Disclosure Framework - Changes to the terms or conditions of a share-based payment award as a modification. UnderDisclosure Requirements for Fair Value Measurement. ASU 2018-13 modifies, among other things, the new guidance, modification accounting isdisclosures required only if thefor Level 3 fair value measurements, including the vesting conditions, or the classificationrange and weighted average of the award (as equity or liability) changes as a result of the change in terms or conditions. It is effective prospectively for the annual period ending December 31, 2018 and interim periods within that annual period. Early adoption is permitted. Historically, modifications to our share-based awards is rare. As such, we do not expect the application of this standard to have a significant impact on our consolidated financial statements.

In March 2017, the FASB issued ASU 2017-08, Receivable-Nonrefundable Fees and Other Costs (Topic 310-20) Premium Amortization on Purchased Callable Debt Securities. This amendment shortens the amortization period for certain callable debt securities held at a premium. Specifically, the amendment requires premiums to be amortized to the earliest call date. The amendments do not require an accounting change for securities held at a discount; the discount continues to be amortized to maturity.unobservable inputs. The guidance is effective for public business entities for fiscal years,removes, among other things, the disclosure requirement to disclose transfers between Levels 1 and interim periods within those fiscal years, beginning after December 15, 2018. Early adoption is permitted, including adoption in an interim period. If an entity early adopts in an interim period, any adjustments2. Level 3 fair value measurement disclosures should be reflected as of the beginning of the fiscal year that includes that interim period. Theapplied prospectively while all other amendments should be applied retrospectively. The Company adopted ASU 2018-13 on a modified retrospective basis, with a cumulative-effect adjustment directlyJanuary 1, 2020, which had no impact to retained earnings as of the beginning of the period of adoption. We are currently assessing the impact this will have on our condensed consolidated financial statements as the Company did not carry Level 3 fair value items and had not transferred any securities between Levels during the timing of adoption.three months ended March 31, 2020.


In October 2016, the FASB issued ASU 2016-16, Income Taxes (Topic 740) Intra-Entity Transfers of Assets Other Than Inventory. The update amends accounting guidance for intra-entity transfers of assets other than inventory to require the recognition of income tax consequences when the transfer occurs. The update is effective for fiscal years, and interim periods within those fiscal years, beginning after December
15 2017, with early adoption permitted. A modified retrospective approach should be applied. We are currently assessing the impact this will have on our consolidated financial statements and the timing of adoption.



In June 2016, the FASB issued ASU 2016-13, Financial Instruments-Credit Losses (Topic 326); Measurement of Credit Losses on Financial Instruments,Instruments. In November 2018, ASU 2018-19 was issued which amended the standard to clarify that receivables arising from operating leases are within the scope of lease accounting standards. Further, the FASB issued ASU 2019-04, 2019-05, 2019-10, ASU 2019-11, 2020-02 and 2020-03 to provide additional guidance on the credit losses standard. ASU 2016-13 amends the guidance on measuring credit losses on financial assets (including trade accounts receivable and available for sale debt securities) held at amortized cost. Currently,Previously, an “incurred loss” methodology iswas used for recognizing credit losses which delays recognition until it is probable a loss has been incurred. TheThis amendment requires assets valued at amortized cost to be presented at the net amount expected to be collected using an allowance for credit losses. Reversal of credit losses on available-for-saleavailable for sale debt securities will beare now recorded in the current period net income. The amendment willCompany adopted ASU 2016-13 on January 1, 2020. We adopted this standard using a modified-retrospective approach, and recorded a $0.1 million cumulative-effect adjustment to the opening balance of accumulated deficit in connection with the adoption. This adjustment was recorded to establish an allowance for trade account receivables and investment in leases. No cumulative-effect adjustment was recorded for unrealized losses on debt securities available-for-sale as the issuers of such securities held by us were of high credit quality. As a result, the condensed consolidated financial statements for the three months ended March 31, 2020 are presented under the new standard, while the comparative prior year period is not adjusted and continues to be reported in accordance with our historical accounting policy.

Standards not yet adopted

In January 2020, the FASB issued ASU 2020-01, Investments-Equity Securities (Topic 321), Investments-Equity Method and Joint Ventures (Topic 323), and Derivatives and Hedging (Topic 815), Clarifying the Interactions between Topic 321, Topic 323, and Topic 815 (a consensus of the FASB Emerging Issues Task Force). ASU 2020-01 clarifies the interaction of the accounting for equity securities under Topic 321, the accounting for the equity method investments in Topic 323 and the accounting for certain forward contracts and purchased options in Topic 815. This ASU is effective for us on January 1, 2020, with early adoption permitted. We do not anticipate this guidance will have a significant impact on our financial statements and plan to adopt on the effective date.

In February 2016, the FASB issued ASU 2016-02, Leases (Topic 842). This replaces the existing standards relating to leases for both lessees and lessors. For lessees, the new standard requires most leases to be recorded on the balance sheet with expenses recognized much like the existing standard. For lessors, the new standard modifies the classification criteria and accounting for sales-type and direct financing leases and eliminates leveraged leases. For both lessees and lessors, the standard eliminates real estate-specific provisions, changes some of the presentation and disclosure requirements, and changes sale and leaseback criteria. The ASU is required for us on January 1, 2019,2021, with early adoption permitted. We are currently assessing the impact this will have on our condensed consolidated financial statements.


In May 2014,December 2019, the FASB issued ASU 2014-09, Revenue from Contracts with Customers2019-12, Income Taxes (Topic 606), which will supersede nearly all existing revenue recognition guidance under U.S. GAAP. The standard’s core principle is that a company will recognize revenue when it transfers promised goods or services to customers in an amount that reflects740); Simplifying the consideration to which the company expects to be entitled in exchangeAccounting for those goods or services. In August 2015, the FASB issuedIncome Taxes. ASU 2015-14, Revenue from Contracts with Customers Deferral of the Effective Date, which deferred the effective date resulting in a new effective date for us of January 1, 2018. Early adoption is permitted. FASB has issued several other ASU’s which provide further guidance on Topic 606 and have the same effective date. The standard allows for either “full retrospective” adoption, meaning the standard is applied to all of the periods presented, or “modified retrospective” adoption, meaning the standard is applied only to the most current period


presented2019-12 reduces complexity in the financial statements. We will implementaccounting standard. This ASU 2014-09 and all relevant subsequently issued ASU’s on Topic 606 concurrentlyis effective for us on January 1, 2018, and2021, with early adoption permitted. We are currently evaluatingassessing the transition method. We are carefully evaluating our existing revenue recognition practices to determine the extent to which our contracts in the scope of the guidanceimpact this will be affected by the new requirements. The effects may include identifying performance obligations in existing arrangements, determining the transaction price and allocating the transaction price to each separate performance obligation. We will also establish practices to determine when a performance obligation has been satisfied, and recognize revenue in accordance with the new requirements. Given limited revenues have been recognized to date, we have not yet determined the effect of the standard on our futurecondensed consolidated financial statements.


NOTE 3. FDA CLEARANCE

On February 23, 2017, the U.S. Food and Drug Administration (“FDA”) granted Accelerate’s de novo request to market the Accelerate Pheno™ system and Accelerate PhenoTest™ BC kit for identification and antibiotic susceptibility testing of pathogens directly from positive blood culture samples.

Due to various factors, the Company manufactured inventory in advance of regulatory approval (pre-launch inventory).

On January 1, 2017, the regulatory review process had progressed to a point that objective and persuasive evidence of approval was sufficiently probable, and a future economic benefit existed. On January 1, 2017, the Company started capitalizing pre-launch inventory. Additional information regarding inventory is included in Note 7, Inventory.

Prior to January 1, 2017, all pre-launch inventory was not capitalized because a future economic benefit could not be asserted. Costs associated with the Company’s purchase of inventory were reported as research and development costs, or if the inventory was used in marketing evaluations, as sales, general and administrative costs on the consolidated statements of operations and comprehensive loss.



NOTE 3. CONCENTRATION OF CREDIT RISK

Financial instruments that potentially subject the Company to concentrations of credit risk consist primarily of cash equivalents, short-term investments and accounts receivable, including receivables from major customers.

The Company has financial institutions for banking operations that hold 10% or more of the Company’s cash and cash equivalents. As of March 31, 2020, two of the Company's financial institutions held 76% and 12% of the Company’s cash and cash equivalents, respectively. As of December 31, 2019, two of the Company's financial institutions held 73% and 18% of the Company’s cash and cash equivalents, respectively.

The Company grants credit to domestic and international customers. Exposure to losses on accounts receivable is principally dependent on each client's financial position. The Company had one customer that accounted for 11% of the Company’s net accounts receivable balance as of March 31, 2020 and December 31, 2019.

16


Customers who represented 10% or more of the Company’s total revenue for the three months ended March 31, 2020 and 2019 were as follows:

Three Months Ended March 31,
20202019
Company A12 %*
Company B*19 %

* Less than 10% for the period indicated

NOTE 4. FAIR VALUE OF FINANCIAL INSTRUMENTS


The following tables represent the financial instruments measured at fair value on a recurring basis onin the financial statements of the Company and the valuation approach applied to each class of financial instruments at September 30, 2017,March 31, 2020 and December 31, 2016.2019 (in thousands):


March 31, 2020
Quoted Prices
in Active
Markets for
Identical
Assets
(Level 1)
Significant
Other
Observable Inputs
(Level 2)
Significant
Unobservable
Inputs
(Level 3)
Total
Assets:
Cash and cash equivalents:
Money market funds$30,363  $—  $—  $30,363  
Total cash and cash equivalents30,363  —  —  30,363  
Equity investments:
Mutual funds65  —  —  65  
Total equity investments65  —  —  65  
Debt securities available-for-sale:
Certificates of deposit—  6,409  —  6,409  
U.S. Treasury securities20,766  —  —  20,766  
U.S. Agency securities—  6,548  —  6,548  
Commercial paper—  1,997  —  1,997  
Corporate notes and bonds—  16,740  —  16,740  
Debt securities available-for-sale20,766  31,694  —  52,460  
Total assets measured at fair value$51,194  $31,694  $—  $82,888  

17


September 30, 2017
(in thousands)December 31, 2019
Quoted Prices
in Active
Markets for
Identical
Assets
(Level 1)
Significant
Other
Observable Inputs
(Level 2)
Significant
Unobservable
Inputs
(Level 3)
TotalQuoted Prices
in Active
Markets for
Identical
Assets
(Level 1)
Significant
Other
Observable Inputs
(Level 2)
Significant
Unobservable
Inputs
(Level 3)
Total
Assets: 
 
 
 
Assets:
Cash and cash equivalents 
Cash and cash equivalents:Cash and cash equivalents:
Money market funds$19,610
$
$
$19,610
Money market funds$43,745  $—  $—  $43,745  
Commercial paper
1,800

1,800
Commercial paper—  1,993  —  1,993  
Corporate notes and bondsCorporate notes and bonds—  1,006  —  1,006  
Total cash and cash equivalents19,610
1,800

21,410
Total cash and cash equivalents43,745  2,999  —  46,744  
Investments: 
Debt securities available-for-sale:Debt securities available-for-sale:
Certificates of deposit
14,367

14,367
Certificates of deposit—  5,663  —  5,663  
US Treasury securities12,009


12,009
US Agency securities
7,485

7,485
U.S. Treasury securitiesU.S. Treasury securities12,579  —  —  12,579  
U.S. Agency securitiesU.S. Agency securities—  3,998  —  3,998  
Commercial paper
10,456

10,456
Commercial paper—  2,491  —  2,491  
Asset-backed securities
5,024

5,024
Corporate notes and bonds
37,548

37,548
Corporate notes and bonds—  22,706  —  22,706  
Total investments12,009
74,880

86,889
Debt securities available-for-saleDebt securities available-for-sale12,579  34,858  —  47,437  
Total assets measured at fair value$31,619
$76,680
$
$108,299
Total assets measured at fair value$56,324  $37,857  $—  $94,181  


 December 31, 2016
 (in thousands)
 Quoted Prices
in Active
Markets for
Identical
Assets
(Level 1)
Significant
Other
Observable Inputs
(Level 2)
Significant
Unobservable
Inputs
(Level 3)
Total
Assets: 
 
 
 
Cash and cash equivalents:    
Money market funds$10,970
$
$
$10,970
Investments:    
Certificates of deposit
7,257

7,257
US Treasury securities8,544


8,544
US Agency securities
4,501

4,501
Asset-backed securities
5,557

5,557
Corporate notes and bonds
32,660

32,660
Total investments8,544
49,975

58,519
Total assets measured at fair value$19,514
$49,975
$
$69,489

Money market fundsHighly liquid investments with an original maturity of three months or less at time of purchase are included in cash and cash equivalents on the condensed consolidated balance sheet.


Level 1 assets are priced using quoted prices in active markets for identical assets which include money market funds, and U.S. Treasury securities and mutual funds as these specific assets are liquid.


Level 2 available-for-sale securities are priced using quoted market prices for similar instruments or nonbinding


market prices that are corroborated by observable market data. The Company uses inputs such as actual trade data, benchmark yields, broker/dealer quotes, and other similar data, which are obtained from quoted market prices, independent pricing vendors, or other sources, to determine the ultimate fair value of these assets and liabilities. The Company uses such pricing data as the primary input to make its assessments and determinations as to the ultimate valuation of its investment portfolio and has not made, during the periods presented, any material adjustments to such inputs. There were no transfers between levels during the ninethree months ended September 30, 2017.March 31, 2020.


NOTE 5. CONCENTRATION OF CREDIT RISK

Financial instruments that potentially subjectIn 2018, the Company to concentrationsissued the Notes, for total proceeds of credit risk consist primarily of cash equivalents, investments and accounts receivable including receivables from major customers.

The Company’s main financial institution for banking operations held 76% and 57% of the Company’s cash and cash equivalents$171.5 million, as of September 30, 2017,described in Note 10, Convertible Notes. At March 31, 2020 and December 31, 2016,2019, the fair value of the Notes were $93.5 million and $133.8 million, respectively. The fair value of the Notes is highly correlated to the Company’s stock price and as a result, significant changes to the Company’s stock price will have a significant impact on the calculated fair value. The fair value of the Notes are classified as Level 2 within the fair value hierarchy.


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NOTE 6.5. INVESTMENTS


The following tables summarize the Company’s debt securities available-for-sale investments at September 30, 2017,March 31, 2020 and December 31, 2016:2019 (in thousands):


March 31, 2020
Amortized
Cost
Gross
Unrealized
Gains
Gross
Unrealized
Losses
Fair Value
Certificates of deposit$6,381  $28  $—  $6,409  
U.S. Treasury securities20,583  183  —  20,766  
U.S. Agency securities6,527  21  —  6,548  
Commercial paper1,996   —  1,997  
Corporate notes and bonds16,728  26  (14) 16,740  
Total$52,215  $259  $(14) $52,460  
AVAILABLE-FOR-SALE INVESTMENTS
September 30, 2017
(in thousands)
 
Amortized
Cost
Gross
Unrealized
Gains
Gross
Unrealized
Losses
Fair Value
Certificates of deposit$14,367
$
$
$14,367
US Treasury securities12,035

(26)12,009
US Agency securities7,511

(26)7,485
Commercial paper10,456


10,456
Asset-backed securities5,023
1

5,024
Corporate notes and bonds37,577

(29)37,548
Total$86,969
$1
$(81)$86,889


December 31, 2019
Amortized
Cost
Gross
Unrealized
Gains
Gross
Unrealized
Losses
Fair Value
Certificates of deposit$5,646  $17  $—  $5,663  
U.S. Treasury securities12,564  16  (1) 12,579  
U.S. Agency securities4,002  —  (4) 3,998  
Commercial paper2,492  —  (1) 2,491  
Corporate notes and bonds22,711   (11) 22,706  
Total$47,415  $39  $(17) $47,437  
AVAILABLE-FOR-SALE INVESTMENTS
December 31, 2016
(in thousands)
 Amortized
Cost
Gross
Unrealized
Gains
Gross
Unrealized
Losses
Fair Value
Certificates of deposit$7,257
$
$
$7,257
US Treasury securities8,553
1
(10)8,544
US Agency securities4,514

(13)4,501
Asset-backed securities5,554
3

5,557
Corporate notes and bonds32,717
3
(60)32,660
Total$58,595
$7
$(83)$58,519


The following table summarizes the maturities of the Company’s debt securities available-for-sale securitiesinvestments at September 30, 2017,March 31, 2020 and December 31, 2016:2019 (in thousands):



March 31, 2020December 31, 2019
Amortized
Cost
Fair ValueAmortized
Cost
Fair Value
Due in less than 1 year$51,968  $52,213  $43,627  $43,650  
Due in 1-3 years247  247  3,788  3,787  
$52,215  $52,460  $47,415  $47,437  


AVAILABLE-FOR-SALE INVESTMENT MATURITIES
(in thousands)
 September 30, 2017December 31, 2016
 Amortized
Cost
Fair ValueAmortized
Cost
Fair Value
Due in less than 1 year$60,999
$60,974
$45,391
$45,344
Due in 1-5 years25,970
25,915
13,204
13,175
Total$86,969
$86,889
$58,595
$58,519

Proceeds from sales of marketabledebt securities available-for-sale (including principal paydowns), for the three months endedSeptember 30, 2017 March 31, 2020 and 20162019 were $3.0 million$0 and $7.7 million, respectively, and for the for the nine months endedSeptember 30, 2017 and 2016 were $9.5 million and $8.7$9.0 million, respectively. The Company determines gains and losses of marketable securities based on specific identification of the securities sold. There were $6,000 of realized gains from sales of marketable securities for the three and nine months ended September 30, 2016, and no gross0 material realized gains or losses from sales of marketabledebt securities available-for-sale for the three and nine months ended September 30, 2017. The gross proceeds associated with the realized gainsMarch 31, 2020 and 2019. No material balances were reclassified out of accumulated other comprehensive loss for the three and nine months ended September 30, 2016March 31, 2020 and 2019.

As of March 31, 2020, there were $7.2 million.no holdings of debt securities available-for-sale of any one issuer, other than the U.S. government and its agencies, in an amount greater than 10%. As of March 31, 2020 there were no debt securities available-for-sale in an unrealized loss position greater than 12 months.
No other-than-temporary impairments are recorded as no material
19


As of March 31, 2020 the Company carried debt securities available-for-sale that were certificates of deposits, which were not covered by a rating agency or the credit rating was below the Company's minimum credit rating. As of March 31, 2020 all of the Companies certificate deposits were below the FDIC's insurance limit of $250 thousand per depositor which mitigated the Companies investment risk. All other debt securities available-for-sale had a fair value that remained less than its cost for more than twelve monthscredit rating of A- or better as of September 30, 2017, and thereMarch 31, 2020.

Unrealized losses on debt securities available-for-sale have not been no other indicatorsrecognized in income for the three months ended March 31, 2020 because the issuers of impairment. The Companysuch securities held by us were of high credit quality, management does not intend to sell investmentsthe securities and it is more likely than not that wemanagement will not be required to sell the securities prior to their anticipated recovery. Declines in fair value are largely due to changes in interest rates and other market conditions. Issuers continue to make timely principal and interest payments on the debt securities available-for-sale. The fair value is expected to recover as the debt securities available-for-sale approach maturity.

Equity securities are comprised of investments before recovering the amortized cost.

Additional information regarding thein mutual funds. The fair value of our financial instruments is includedequity securities at March 31, 2020 was $0.1 million. There were 0 material unrealized losses on equity securities recorded in Note 4, Fair Valueincome for the three months ended March 31, 2020. These unrealized losses are recorded as a component of Financial Instruments.other expense, net. There were 0 realized gains or losses from equity securities for the three months ended March 31, 2020.


NOTE 6. INVENTORY

Inventories consisted of the following at March 31, 2020 and December 31, 2019 (in thousands):

March 31,December 31,
20202019
Raw materials$5,041  $4,854  
Work in process1,786  1,561  
Finished goods1,700  1,644  
$8,527  $8,059  


NOTE 7. INVENTORYPROPERTY AND EQUIPMENT


Inventory is statedProperty and equipment consisted of the following at the lesser of cost or net realizable value, with cost determined on the first-in-first-out method. The allocation of production overhead to inventory costs is based on normal production capacity. Abnormal amounts of idle facility expenseMarch 31, 2020 and spoilage are expensed as incurred, and not included in overhead subject to capitalization. The Company maintains provisions for excess and obsolete inventory based on management’s estimates of forecasted demand and, where applicable, product expiration. The components of inventories were as followsDecember 31, 2019 (in thousands):

March 31,December 31,
20202019
Computer equipment$2,476  $2,477  
Technical equipment3,740  3,681  
Facilities3,686  3,883  
Instruments8,247  7,491  
Capital projects in progress618  238  
Total property and equipment$18,767  $17,770  
Accumulated depreciation(10,128) (9,865) 
Property and equipment, net$8,639  $7,905  

Depreciation expense for each of the three months ended March 31, 2020 and 2019 was $0.6 million.

Gross assets under operating leases where the Company is the lessor at March 31, 2020 and December 31, 2019 is $5.2 million and $4.6 million, respectively. The underlying accumulated depreciation under operating leases where the Company is the lessor at March 31, 2020 and December 31, 2019 is $1.0 million and $0.8 million, respectively.

20
 September 30,December 31,
 20172016
Raw materials$4,607
$
Work in process429

Finished goods2,305

Inventory, net$7,341
$





NOTE 8. PROPERTY AND EQUIPMENT

Property and equipment are recorded at cost and consisted of the following at September 30, 2017, and December 31, 2016.
PROPERTY AND EQUIPMENT
(in thousands)
 September 30,December 31,
 20172016
Computer equipment$2,865
$2,270
Technical equipment3,267
2,427
Facilities3,512
3,387
Instruments1,015

Capital projects in progress464
1,010
Total property and equipment$11,123
$9,094
Accumulated depreciation - other(6,433)(4,836)
Net property and equipment$4,690
$4,258

Depreciation expense (which includes amortization of capital lease assets) for the three months endedSeptember 30, 2017 and 2016 was $550,000 and $598,000, respectively, and for the nine months endedSeptember 30, 2017 and 2016 was $1.6 million and $1.7 million, respectively.
NOTE 9. LICENSE AGREEMENTS AND GRANTS


National Institute of Health Grant


In February 2015, the National Institute of Health awarded Denver Health and the Company a five-year,five-year, $5.0 million grant to develop a fast and reliable identification and categorical susceptibility test for carbepenem-resistant Enterobacteriaceae directly from whole blood. The cumulative sub-award amountgrant is $885,000, under whichpaid to the Company has invoiced a total of $740,000, whichincrementally through sub-awards. The cumulative amount awarded to date under these sub-awards is recorded as an offset to research and development expenses.$1.3 million. The amountsamount invoiced for the three months ended September 30, 2017March 31, 2020 and 2016 were $180,0002019 was $0 and $8,000, respectively, and for$0.1 million, respectively. Subsequent to the nine months ended September 30, 2017 and 2016 were $183,000 and $67,000, respectively.

Arizona Commerce Authority

In August 2012, the Company entered into a Grant Agreement (the “Grant Agreement”) with the Arizona Commerce Authority, an agencyoriginal term of the Stategrant the National Institute of Arizona (the “Authority”), pursuant to which the AuthorityHealth has provided certain state and county sponsored incentives forincremental annual extensions that have allowed the Company to relocate its corporate headquarters to, and expand its business within, the State of Arizona (the “Project”). Pursuant to the Grant Agreement, the Authority agreed to provide a total grant in the amount of $1.0 million (the “Grant”) for the use by the Company in the advancement of the Project. The Grant is payable out of an escrow account in four installments, upon the achievement of the following milestones:additional services.


Milestone 1 – Relocation of Company’s operations and corporate headquarters to Arizona and creation of 15 Qualified Jobs (as defined below).

Milestone 2 – Creation of 30 Qualified Jobs (including Qualified Jobs under Milestone 1).

Milestone 3 – Creation of 40 Qualified Jobs (including Qualified Jobs under Milestones 1 and 2).

Milestone 4 – Creation of 65 Qualified Jobs (including Qualified Jobs under Milestones 1, 2 and 3) and capital investment of at least $4.5 million.

For purposes of the Grant Agreement, a “Qualified Job” is a job that is permanent, full-time, new to Arizona, and for which the Company pays average (across all Qualified Jobs identified by the Company in its discretion) annual wages of at least $63,000 and offers health insurance benefits and pays at least 65% of the premiums associated with


such benefits. The amount of each installment payment will be determined in accordance with a formula specified in the Grant Agreement. The Grant Agreement also contains other customary provisions, including representations, warranties and covenants of both parties. As of September 30, 2017, the Company has collected all of the $1.0 million in milestones. The full amount is recorded in current deferred revenue and income until the economic development provisions of the grant have been satisfied in full, as there are “claw-back” provisions which would require repayment of certain amounts received if employment levels are not sustained during the term of the arrangement. Once the “claw-back” provisions expire in January 2018, we will recognize the grant as an offset to expense. Further details are included in Note 10, Deferred Revenue and Income.

Arizona R&D Refundable Tax Credit Program

The Company received a “Certificate of Qualification” from the Authority, which allowed the Company a partial refund of research and development investments. The amounts incurred under this program are recorded as an offset to research and development expenses, and for the nine months ended September 30, 2017 and 2016 were $0 and $1.2 million, respectively, and no amounts were incurred for three months ended September 30, 2017 and 2016, respectively. If the amount received for this program is later determined to be incorrect or invalid, the excess may need to be repaid.

NOTE 10.9. DEFERRED REVENUE AND INCOMEREMAINING PERFORMANCE OBLIGATIONS


Deferred revenue consists of amounts received for products or services not yet delivered or earned. Deferred income consists of amounts received for commitments not yet fulfilled. If we anticipate that the revenue or income will not be earned within the following twelve months, the amount is reported as long-term deferred income.other non-current liabilities. A summary of the balances as of September 30, 2017,March 31, 2020 and December 31, 2016, follows:2019 follows (in thousands):

Deferred Revenue and Income
(in thousands)
 September 30,December 31,
 20172016
Products and services not yet delivered$81
$35
Arizona Commerce Authority grant1,000

Total current deferred revenue and income$1,081
$35
   
Arizona Commerce Authority grant
1,000
Total long-term deferred income$
$1,000
March 31,December 31,
20202019
Products and services not yet delivered$186  $271  


We have received $1.0recognized $0.1 million of revenues that were included in milestone paymentsthe beginning contract liabilities balances during the three months ended March 31, 2020. No material revenues were recognized that were included in the beginning contract liabilities balances during the three months ended March 31, 2019. No material amount of revenue recognized during the period was from the Authority under the Grant Agreement describedperformance obligations satisfied in Note 9, License Agreements and Grants. prior periods.

Transaction Price Allocated to Remaining Performance Obligations

As of September 30, 2017, no such paymentsMarch 31, 2020, $4.4 million of revenue is expected to be recognized from remaining performance obligations. This balance primarily relates to executed service contracts that begin as warranty periods expire. These service contracts typically provide for four-year terms and revenue is recognized on a straight-line basis. The balance also includes product shipments for reagent rental, sales-type lease agreements. The agreements have beenbetween two and four year terms and revenue is recognized in income,as product is shipped, typically on a straight-line basis.

The Company elects not to disclose the value of unsatisfied performance obligations for (i) contracts with an expected length of one year or less and (ii) contracts for which we do not anticipate recognizing such payments as income untilrecognize revenue at the “claw-back” provisions under the Grant Agreement expire in January 2018.



NOTE 11. STOCK PURCHASE

In April 2012, we entered into a Securities Purchase Agreement with Abeja Ventures, LLC pursuantamount to which we have the right to invoice for services performed.

NOTE 10. CONVERTIBLE NOTES

On March 27, 2018, the Company agreed, among other things,issued $150.0 million aggregate principal amount of 2.50% Senior Convertible Notes due 2023. In connection with the offering of the Notes, the Company granted the initial purchasers of the Notes a 13-day option to issue a warrantpurchase up to purchasean additional $22.5 million aggregate principal amount of the Notes on the same terms and conditions. On April 4, 2018, the option was partially exercised, which resulted in $21.5 million of additional proceeds, for total proceeds of $171.5 million. The Notes are the Company's senior unsecured obligations and mature on March 15, 2023 (the “Maturity Date”), unless earlier repurchased or converted into shares of common stock under certain circumstances described below. The Notes are convertible into shares of the Company’s common stock. Further details of this agreement are included in our Annual Report on Form 10-Kstock, can be repurchased for cash, or a combination thereof, at the fiscal year ended December 31, 2016, as filed with the SEC on February 28, 2017. As of December 31, 2016, there were warrants to purchase 415,871 shares unexercised. During the nine months ended September 30, 2017, warrants to purchase 370,307 shares were exercisedCompany’s election, at an exerciseinitial conversion rate of 32.3428 shares of common stock per $1,000 principal amount of the Notes, which is equivalent to an initial conversion price of $2.00approximately $30.92 per share. Proceedsshare of common stock, subject to adjustment. The Company pays interest on the Notes semi-annually in arrears on March 15 and September 15 of each year.

The $171.5 million of proceeds received from the exerciseissuance of such warrants totaling $741,000 are recorded as common stockthe Notes were allocated between long-term debt (the “liability component”) of $116.6 million and contributed capital (the “equity component”) of $54.9 million. The fair value of the liability component was measured using rates determined for similar debt instruments without a
21


conversion feature. The carrying amount of the equity component, representing the conversion option, was determined by deducting the fair value of the liability component from the aggregate face value of the Notes. The liability component will be accreted up to the face value of the Notes of $171.5 million, which will result in additional non-cash interest expense being recognized through the Maturity Date. The equity component will not be remeasured as long as it continues to meet the conditions for equity classification.

The Company incurred approximately $5.0 million of issuance costs related to the issuance of the Notes, of which $3.4 million and $1.6 million were recorded to long-term debt and contributed capital, respectively. The $3.4 million of issuance costs recorded as long-term debt on the condensed consolidated balance sheet.sheet are being amortized over the five-year contractual term of the Notes using the effective interest method. The remaining warrantseffective interest rate on the Notes, including accretion of the Notes to purchase 45,564 shares expired unexercisedpar and debt issuance cost amortization, is 11.52%.

The Notes include customary terms and covenants, including certain events of default upon which the Notes may be due and payable immediately. Holders have the option to convert the Notes in multiples of $1,000 principal amount at any time prior to December 15, 2022, but only in the following circumstances:

if the Company’s stock price exceeds 130% of the conversion price for 20 of the last 30 trading days of any calendar quarter after June 30, 2018;

during the 5 business day period after any 5 consecutive trading day period in which the Notes’ trading price is less than 98% of the product of the common stock price times the conversion rate; or

the occurrence of certain corporate events, such as a change of control, merger or liquidation.

At any time on June 26, 2017.

NOTE 12. PUBLIC OFFERING

On May 9, 2017,or after December 15, 2022, a holder may convert its Notes in multiples of $1,000 principal amount. Holders of the Notes who convert their Notes in connection with a make-whole fundamental change (as defined in the Indenture pursuant to which the Notes were issued) are, under certain circumstances, entitled to an increase in the conversion rate. In addition, in the event of a fundamental change or event of default prior to the Maturity Date, holders will, subject to certain conditions, have the right, at their option, to require the Company publishedto repurchase for cash all or part of the Notes at a prospectus supplement underwritten by J.P. Morgan Securities LLC, William Blair &repurchase price equal to 100% of the principal amount of the Notes to be repurchased, plus accrued and unpaid interest up to, but excluding, the repurchase date.

The Notes at March 31, 2020 and December 31, 2019 consisted of the following (in thousands):

March 31,December 31,
20202019
Outstanding principal$171,500  $171,500  
Unamortized debt discount(36,524) (39,042) 
Unamortized debt issuance(2,259) (2,415) 
Net carrying amount of the liability component$132,717  $130,043  

The Company L.L.C., Piper Jaffray & Co.recorded $1.1 million for contractual coupon interest for each of the three months ended March 31, 2020 and BTIG, LLC ("Underwriters"2019. Amortization of debt issuance costs for the three months ended March 31, 2020 and 2019 was $0.2 million and $0.1 million, respectively. Amortization of the debt discount for the three months ended March 31, 2020 and 2019 was $2.5 million and $2.2 million, respectively. As of March 31, 2020 and December 31, 2019, no Notes were convertible pursuant to their terms.

In connection with the Notes issuance, the Company entered into a prepaid forward stock repurchase transaction (“Prepaid Forward”) offering 2.8with a financial institution (“Forward Counterparty”). Pursuant to the Prepaid Forward, the Company used approximately $45.1 million of the net proceeds from its issuance of the Notes to fund the Prepaid Forward. The aggregate number of shares of the Company’s common stock underlying the Prepaid Forward was approximately 1,858,500. The expiration date for the Prepaid Forward is March 15, 2023, although it may be settled earlier in whole or in part. Upon settlement of the Prepaid Forward, at expiration or upon any early settlement, the Forward Counterparty will deliver to the Company the number of shares of common stock withunderlying the Prepaid Forward or the portion thereof being settled early. The shares purchased under the Prepaid Forward are treated as treasury stock and not outstanding for purposes of the calculation of basic and diluted earnings per share, but will remain outstanding for corporate law purposes, including for purposes of any future stockholders’
22


votes, until the Forward Counterparty delivers the shares underlying the Prepaid Forward to the Company. The Company’s Prepaid Forward hedge transaction exposes the Company to credit risk to the extent that its counterparty may be unable to meet the terms of the transaction. The Company mitigates this risk by limiting its counterparty to a major financial institution.

NOTE 11. EARNINGS PER SHARE

Basic net loss per common share was determined by dividing net loss applicable to common stockholders by the weighted average common shares outstanding during the period. Basic and diluted net loss per share are the same because all outstanding common stock equivalents have been excluded, as they are anti-dilutive due to the Company’s losses.

The following potentially issuable common shares were not included in the computation of diluted net loss per share because they would have an optionanti-dilutive effect for the Underwriters to purchase up to 413,000 additionalthree months ended March 31, 2020 and 2019 (in thousands):

Three Months Ended March 31,
20202019
Shares issuable upon the release of restricted stock awards154  30  
Shares issuable upon exercise of stock options10,851  9,160  
11,005  9,190  

Potentially dilutive common shares would also include common shares that would be outstanding if Notes convertible at the balance sheet date were converted. As discussed in Note 10, Convertible Notes, the Company issued $171.5 million of Notes due 2023. The Notes are convertible into shares of the Company’s common stock, can be repurchased for cash, or a combination thereof, at the Company’s election, at an initial conversion rate of 32.3428 shares of common stock for a totalper $1,000 principal amount of 3.2the Notes. As of March 31, 2020, 0 Notes were convertible pursuant to their terms. The number of shares issuable upon conversion of the Notes is 5.5 million shares.

In connection with the Notes, the Company entered into a prepaid forward stock repurchase transaction. The public offering priceaggregate number of shares of the Company’s common stock underlying the Prepaid Forward was $28.850approximately 1,858,500. The shares purchased under the Prepaid Forward are treated as treasury stock and not outstanding for purposes of the calculation of basic and diluted earnings per share, and underwriting discounts and commissions were $1.731 per sharebut will remain outstanding for net proceedscorporate law purposes, including for purposes of $27.119 per share.

The public offering was finalized and 2.8 millionany future stockholders’ votes, until the Forward Counterparty delivers the shares of common stock were deliveredunderlying the Prepaid Forward to the purchasers on or around May 15, 2017. The Underwriters partially exercised their option to purchase an additional 335,000 shares, with the sale closing on June 14, 2017, and the option as to the remaining shares expired June 15, 2017. Proceeds from the sales totaled $89.0 million less underwriting discounts, commissions and other costs of $5.8 million for net proceeds of $83.2 million. The net proceeds will be used for general corporate purposes and to fund our commercialization efforts. We may also use a portion of the net proceeds to acquire or invest in complementary businesses, technologies, product candidates or other intellectual property, although we have no present commitments or agreements to do so. Accordingly, we will retain broad discretion over the use of these proceeds.Company.


NOTE 13. EARNINGS PER SHARE

The financial statements show basic and diluted loss per share.

The Company’s net loss for the periods presented caused the inclusion of all outstanding warrants, restricted stock and options to purchase our common stock to be antidilutive. As of September 30, 2017, and December 31, 2016, there were common stock options, restricted stock units and warrants exercisable for 7,472,734 and 7,313,245 shares of common stock, respectively, which were not included in diluted loss per share as the effect was antidilutive.

NOTE 14.12. EMPLOYEE EQUITY-BASED COMPENSATION


The following table summarizes option activity under all plans duringfor the nine-month period ending September 30, 2017:three months ended March 31, 2020:


Number of SharesWeighted Average Exercise Price per Share
Options Outstanding January 1, 202010,132,562  $12.28  
Granted1,136,303  7.72  
Forfeited(83,896) 16.86  
Exercised(266,725) 4.94  
Expired(67,193) 20.04  
Options Outstanding March 31, 202010,851,051  $11.90  

23

Stock Option Activity
 Number of SharesWeighted Average Exercise Price per Share
Options outstanding December 31, 20166,857,124
$7.72
Granted1,113,861
24.49
Forfeited(131,167)21.41
Exercised(384,812)9.93
Expired(6,422)24.45
Options Outstanding September 30, 20177,448,584
9.86


The table below summarizes the resulting weighted average inputs used to calculate the estimated fair value of options awarded duringfor the periods shown below:three months ended March 31, 2020 and 2019:



Three Months Ended March 31,
20202019
Expected term (in years)5.986.17
Volatility56 %62 %
Expected dividends—  —  
Risk free interest rates0.74 %2.59 %
Weighted average fair value$3.98  $6.90  

Black-Scholes Assumptions for Options Granted
 Three Months Ended
 September 30, 2017September 30, 2016
Expected term (in years)6.46
6.46
Volatility74%89%
Expected dividends

Risk free interest rates2.02%1.30%
Weighted average fair value$15.74
$15.40


The following table shows summary information for outstanding options and options that are exercisable (vested) as of September 30, 2017:March 31, 2020:


Options
Outstanding
Options
Exercisable
Number of options10,851,051  656,318  
Weighted average remaining contractual term (in years)5.994.10
Weighted average exercise price$11.90  $9.78  
Weighted average fair value$7.53  $6.38  
Aggregate intrinsic value (in thousands)$22,821  $21,281  
Stock Option Supplemental Information
 
Options
Outstanding
Options
Exercisable
Number of options7,448,584
5,214,464
Weighted average remaining contractual term (in years)6.32
5.40
Weighted average exercise price$9.86
$6.02
Weighted average fair value$7.31
$4.51
Aggregate intrinsic value (in thousands)$96,074
$86,005


The following table summarizes restricted stock unitRSU and restricted stock award activity duringfor the nine-month period ending September 30, 2017:three months ended March 31, 2020:


Number of SharesWeighted Average Grant Date Fair Value per Share
Outstanding January 1, 202014,332  $16.66  
Granted147,766  9.66  
Forfeited(4,666) 14.67  
Vested/released(3,234) 14.51  
Outstanding March 31, 2020154,198  $10.05  
Restricted Stock Unit (RSU) and Restricted Stock Award (RSA) Activity
 Number of SharesWeighted Average Grant Date Fair Value per Share
RSUs & RSAs Outstanding December 31, 201640,250
$20.91
Granted1,911
22.40
Forfeited

Vested/released(18,011)21.07
RSUs & RSAs outstanding September 30, 201724,150
20.91


The table below summarizes equity-based compensation expense recognized onfor the Company’s condensed consolidated statementsthree months ended March 31, 2020 and 2019:

Three Months Ended March 31,
20202019
Cost of sales$71  $55  
Research and development1,123  1,527  
Sales, general and administrative3,005  1,815  
$4,199  $3,397  

For each of operationsthe three months ended March 31, 2020 and comprehensive loss related2019, $0.1 million of share-based compensation cost was capitalized to options is summarized below:inventory or inventory transferred to property and equipment (also referred to as instruments).


24

Equity-Based Compensation Expenses
(in thousands)
 Three Months EndedNine Months Ended
 September 30, 2017September 30, 2016September 30, 2017September 30, 2016
Cost of sales$22
$
$44
$
Research and development994
504
2,886
1,168
Sales, general and administrative2,504
2,166
8,040
5,423
Equity-based compensation expense$3,520
$2,670
$10,970
$6,591




As of September 30, 2017, $262,000 and $33,000 ofMarch 31, 2020, unrecognized equity-based compensation expense was a component of capitalized inventory and property and equipment respectively.

As of September 30, 2017, unrecognized equity-based compensation cost related to unvested stock options and unvested restricted stock unitsRSUs was $16.7$23.4 million and $216,000$0.8 million, respectively. This is expected to be recognized over the years 20172020 through 2022.2025.


As discussedIncluded in Notethe above-noted stock options outstanding and stock compensation expense are performance-based stock options which vest only upon the achievement of certain targets. Performance-based stock options are generally granted at-the-money, contingently vest over a period of 1 we implemented ASU 2016-09, Compensation-Stock Compensation (Topic 718) Improvements to Employee Share-Based Payment Accounting2 years, depending on January 1, 2017. Pursuantthe nature of the performance goal, and have contractual lives of 10 years. These options were valued in the same manner as the time-based options, with the assumption that performance goals will be achieved. The inputs for expected volatility, expected dividends, and risk-free rate used in estimating those options’ fair value are the same as the time-based options issued under the plan. The expected term for performance-based stock options is 5 to this guidance, we made a policy election6 years. However, the Company only recognizes stock compensation expense to accountthe extent that the targets are determined to be probable of being achieved, which triggers the vesting of the performance options.

In August 2018, the Company granted 225,000 performance-based stock options. The performance obligations were met for forfeitures75,000 options and are exercisable as they occur rather than on an estimated basisof March 31, 2020. Of the 225,000 performance-based stock options granted 100,000 performance-based stock options were forfeited for the performance targets not being achieved.

125,000 performance-based stock options were outstanding as of March 31, 2020, which included 50,000 performance-based stock options not yet probable of being achieved and therefore, equity basedhave not started being expensed. No performance-based stock options have been exercised as of March 31, 2020. For the three months ended March 31, 2020 and 2019, the Company recognized $0 and $0.1 million of stock compensation expense for performance-based stock options, respectively.

Included in the above-noted RSU and restricted stock award outstanding amount are performance-based RSU's which vest only upon the achievement of certain targets. Performance-based RSU's contingently vest over a period of 3 years, depending on the nature of the performance goal, and have contractual lives of 10 years. These units were valued in the same manner as other RSUs, based on the published closing market price on the day before the grant date. However, the Company only recognizes stock compensation expense to the extent that the targets are determined to be probable of being achieved, which triggers the vesting of the performance options. For the three and nine months ended September 30, 2017 has been calculated based on actual forfeitures in our condensed consolidated statementsMarch 31, 2020 the Company granted 95,866 performance-based RSU's, all of operations and comprehensive loss, rather than our previous approach which was net of estimated forfeitures. Share-based compensation expense for the three and nine months ended September 30, 2016 is recorded net of estimated forfeitures, which were based on historical forfeitures and adjusted to reflect changes in facts and circumstances, if any. This change was accounted for using the modified retrospective transition method. This election resulted in a cumulative-effect adjustment which increased our accumulated deficit and additional paid-in capital by $655,000 for all outstanding awards as of January 1, 2017. We believe this election simplifies several aspectsat March 31, 2020. None of the accounting for share-based payment transactions.performance goals had become probable of being achieved, and no expense was recorded at March 31, 2020.


This new guidance requires that we record excess tax benefits and tax deficiencies related to the settlement of employee stock-based compensation to the income tax expense line item on our condensed consolidated statements of operations and comprehensive loss. The new guidance also states that previously unrecognized excess tax benefits should be recognized on a modified retrospective basis as of the beginning of the annual period of adoption. At January 1, 2017, we recorded approximately $1.5 million of additional deferred tax assets, which are fully offset by a valuation allowance. Accordingly, the adoption of ASU 2016-09 did not result in an adjustment to retained earnings for the cumulative effect of the tax benefit of the stock compensation.

The new guidance also requires excess tax benefits to be classified as an operating activity in the statement of cash flows rather than as a financing activity. Additionally, ASU 2016-09 requires that the minimum tax withholding paid on behalf of employees for share-based awards be classified as a financing activity in the statement of cash flows. Adoption of ASU 2016-09 did not result in any adjustments to prior period disclosures on the condensed consolidated statement of cash flows.

NOTE 15.13. INCOME TAXES


For the ninethree months ended September 30, 2017,March 31, 2020, the Company recorded adid 0t carry an income tax provision for income taxes of $220,000, which primarily related to a profitableamount as the Company does not recognize tax benefits from current year tax losses in the U.S. and other foreign jurisdiction without any net operating loss carryforwards.jurisdictions. The Company’s tax expense for the ninethree months ended September 30, 2017March 31, 2020 differs from the tax expense computed by applying the U.S. statutory tax rate to its year-to-date pre-tax loss of $47.5$21.3 million, as no tax benefits were recorded for tax losses generated in the U.S. and other foreign jurisdictions. At September 30, 2017,March 31, 2020, the Company had deferred tax assets primarily related to U.S. federal and state tax loss carryforwards.carryforwards and a deferred tax liability related to amortization of the Notes. The Company provided a full valuation allowance against its net deferred tax assets as future realization of such assets is not more likely than not to occur.


At September 30, 2017,On March 27, 2020, the United States enacted the Coronavirus Aid, Relief and Economic Security Act (“CARES Act”). The Cares Act is an emergency economic stimulus package that includes spending and tax breaks to strengthen the United States economy and fund a nationwide effort to curtail the effect of COVID-19. While the CARES Act provides sweeping tax changes in response to the COVID-19 pandemic, some of the more significant provisions include removal of certain limitations on utilization of net operating losses, increasing the loss carryback period for certain losses to five years, and increasing the ability to deduct interest expense, as well as amending certain provisions of the previously enacted Tax Cuts and Jobs Act. Due to the recent enactment of the CARES Act, the Company had gross unrecognizedis unable to quantify the impact, if any, that the CARES Act will have on its financial position, results of operations or cash flows. Management does not expect the CARES Act to have a material impact on the Company’s income tax benefits of $1.1 million. position for financial reporting purposes.

The Company isaccounts for uncertain tax positions pursuant to the recognition and measurement criteria under ASC 740, Income Taxes. For the three months ended March 31, 2020, we did not currently under examination by taxing authorities and doesnote any significant
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changes to our uncertain tax positions. We do not believe the amount of unrecognizedanticipate significant changes to uncertain tax benefits will significantly increase or decrease overpositions within the next 12 months.




NOTE 16.14. COMMITMENTS

Leases

The Company has entered into lease agreements, lease amendments, and lease extensions the last of which expires in 2022. Total rent expense, including common area charges was $308,000 and $286,000 for the three months ended September 30, 2017 and 2016, respectively, and for the nine months ended September 30, 2017 and 2016 was $933,000 and $826,000, respectively. Future minimum lease payments under operating lease agreements are as follows:

Operating Lease Obligations
(in thousands)
Year ending December 31: 
2017$264
20181,022
2019180
202065
202130
Thereafter4
Total operating lease obligations$1,565


Clinical Trial & Study Agreements


The Company has entered into master agreements with clinical trial and study sites in which we typically pay a set amount for start-up costs and then pay for work performed. These agreements typically indemnify the clinical trial sites from any and all losses arising from third party claims as a result of the Company’sCompany's negligence, willful misconduct or misrepresentation. The Company incurred clinical trial expense of $0expenses for start-up costs and $354,000work performed for the three months ended September 30, 2017these trials and 2016, respectively, and $27,000 and $1.8 million for the nine months ended September 30, 2017 and 2016, respectively. The expense incurredstudies is recorded as part of the clinical trial is included in research and development or sales, general and administrative expenses on the Company's condensed consolidated statements of operations and comprehensive loss. No commitments were recorded in connection with indemnifying these sites during the three months ended March 31, 2020 and 2019.


Legal Matters

NOTE 15. LEASES
On March 19, 2015, a putative securities class action lawsuit was filed against Accelerate Diagnostics, Inc., Lawrence Mehren, and Steve Reichling, Rapp v. Accelerate Diagnostics, Inc., et al., U.S. District Court, District of Arizona, 2:2015-cv-00504.
The complaint alleges thatfollowing presents supplemental information related to our leases in which we violated Sections 10(b) and 20(a) ofare the Securities Exchange Act of 1934 and SEC Rule 10b-5, by making false or misleading statements about our Accelerate Pheno™ system, formerly called the BACcel System. Plaintiff purports to bring the action on behalf of a class of persons who purchased or otherwise acquired our stock between March 7, 2014, and February 17, 2015. On June 9, 2015, Julia Chang was appointed Lead Plaintiff of the purported class. On June 23, 2015, Plaintiff filed an amended complaint alleging violations of Sections 10(b) and 20(a) of the Securities Exchange Act of 1934 and Rule 10b-5, by making false or misleading statements or omissions about our ID/AST System and by allegedly employing schemes to defraud. Plaintiff sought certification of the action as a class action, compensatory damageslessee for the classthree months ended March 31, 2020 and 2019 (in thousands):

Three Months Ended March 31,
20202019
Cash paid for amounts included in lease liabilities
Operating cash flows from operating leases$284  $82  
ROU assets obtained in exchange for lease obligations
Operating leases$17  $—  
Lease Cost
Operating leases$319  $82  
Short-term leases$32  $295  

The weighted average remaining lease term on our operating leases is 5.1 years. The weighted average discount rate on those leases is 7%.

The following presents maturities of operating lease liabilities in an unspecified amount, legal feeswhich we are the lessee as of March 31, 2020 (in thousands):

Remainder of 2020$529  
2021774  
2022882  
2023980  
20241,055  
Thereafter518  
Total lease payments4,738  
Less imputed interest(819) 
$3,919  

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The net investment in sales-type leases, where we are the lessor, is a component of other current assets and costs, and such other reliefnon-current assets in our condensed consolidated balance sheet. As of March 31, 2020, the total net investment in these leases was $1.2 million. The following presents maturities of lease receivables under sales-type leases as the court may order. Defendants moved to dismiss the amended complaint on July 21, 2015. The Court granted the motion and dismissed the case with prejudice on January 28, 2016. On February 26, 2016, Plaintiff filed a notice of appeal with the United States Court of Appeals for the Ninth Circuit, which challenges the dismissal of the amended complaint. Chang v. Accelerate Diagnostics, Inc., et al., No. 2:15-CV-00504-SPL (9th Cir. filed Feb. 26, 2016). On September 13, 2017, Plaintiff voluntarily dismissed the appeal and the case has been dismissed with prejudice.March 31, 2020 (in thousands):




Remainder of 2020$361  
2021394  
2022337  
202379  
202425  
Thereafter—  
Total undiscounted cash flows1,196  
Less imputed interest—  
Present value of lease payments$1,196  

NOTE 17. SEGMENTS16. INDUSTRY, GEOGRAPHIC AND REVENUE DISAGGREGATION


The Company operates as one1 operating segment. Sales to customers outside the United States represented 11% and 33% for the three months ended March 31, 2020 and 2019, respectively.

As of March 31, 2020 and December 31, 2019, balances due from foreign customers, in U.S. dollars, were $2.0 million and $2.1 million, respectively.

The following presents total net sales by geographic territory for the three months ended March 31, 2020 and 2019 (in thousands):

Three Months Ended March 31,
20202019
Domestic$2,087  $1,169  
Foreign255  581  
$2,342  $1,750  

The following presents total net sales by line of business for the three months ended March 31, 2020 and 2019 (in thousands):

Three Months Ended March 31,
20202019
Accelerate Pheno revenue$2,304  $1,705  
Other revenue  38  45  
$2,342  $1,750  

The following presents total net sales by products and services for the three months ended March 31, 2020 and 2019 (in thousands):

Three Months Ended March 31,
20202019
Products  $2,141  $1,693  
Services  201  57  
$2,342  $1,750  

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Lease income included in net sales was $0.5 million and $0.2 million for each of the three months ended March 31, 2020 and 2019, respectively, which does not represent revenues recognized from contracts with customers.

The following presents property and equipment, net by geographic territory (in thousands):

March 31,December 31,
20202019
Domestic$8,039  $7,244  
Foreign600  661  
$8,639  $7,905  

NOTE 17. RELATED PARTY TRANSACTIONS

As discussed in Note 10, Convertible Notes the Company issued Notes in March 2018. As of March 31, 2020 and December 31, 2019 an entity controlled by one member of the Company's board of directors held an aggregate of $42.0 million of the Notes.

On August 20, 2019, the Company and an entity affiliated with then Chief Operating segments are defined as componentsOfficer of the Company entered into a securities purchase agreement (the “Purchase Agreement”) for the issuance and sale by the Company of an enterprise foraggregate of 55,586 shares of the Company’s common stock (the “Shares”) in an offering exempt from registration pursuant to Section 4(a)(2) of the Securities Act of 1933, as amended, and Rule 506 promulgated thereunder. The Shares were sold at a purchase price (determined in accordance with Nasdaq rules relating to the “market value” of the shares) of $17.99 per share, which separate financial informationwas equal to the consolidated closing bid price reported by Nasdaq immediately preceding the time the Company entered into the Purchase Agreement. The $1.0 million of proceeds were recorded to contributed capital.

NOTE 18. SUBSEQUENT EVENTS

On April 14, 2020, the Company entered into a promissory note evidencing an unsecured loan (the “Loan”) in the amount of $4.8 million made to the Company under the Paycheck Protection Program (the “PPP”). The PPP was established under the CARES Act and is evaluated regularlyadministered by the chief operating decision maker, who is the chief executive officer, in deciding how to allocate resourcesU.S. Small Business Administration.

The promissory note matures on April 14, 2022 and assessing performance. The Company’s business operates in one operating segment because the Company’s chief operating decision maker evaluates the Company’s financial information and resources and assesses the performancebears interest at a rate of these resources on a consolidated basis. Since1% per annum. Beginning November 14, 2020, the Company operatesis required to make 18 monthly payments of principal and interest in one operating segment,the amount of $0.3 million. The Loan may be prepaid by the Company at any time prior to maturity with no prepayment penalties. The proceeds from the Loan may only be used for payroll costs (including benefits), interest on mortgage obligations, rent, utilities and interest on certain other debt obligations.

The Note contains customary events of default relating to, among other things, payment defaults, making materially false and misleading representations to the lender or breaching the terms of the Loan documents. The occurrence of an event of default will result in an increase in the interest rate to 18% per annum and provides the lender with customary remedies, including the right to require immediate payment of all required financial segment informationamounts owed under the promissory note.

Pursuant to the terms of the CARES Act and the PPP, the Company may apply to the lender for forgiveness for the amount due on the Loan. The amount eligible for forgiveness is based on the amount of Loan proceeds used by the Company (during the eight-week period after the lender makes the first disbursement of Loan proceeds) for the payment of certain covered costs, including payroll costs (including benefits), interest on mortgage obligations, rent and utilities, subject to certain limitations and reductions in accordance with the CARES Act and the PPP. No assurance can be foundgiven that the Company will obtain forgiveness of the Loan in the consolidated financial statements.whole or in part.


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NOTE 18. RELATED PARTY TRANSACTIONSItem 2. Management’s Discussion and Analysis of Financial Condition and Results of Operations


In June 2016,
Introductory Note

Except as otherwise indicated by the Company recorded a net amount of $866,000 relatedcontext, references in this Quarterly Report on Form 10-Q (this “Form 10-Q”) to the recovery“Company,” “Accelerate,” “we,” “us” or “our” are references to the combined business of short-swing profits underAccelerate Diagnostics, Inc.

Forward-Looking Statements

This Form 10-Q contains certain forward-looking statements within the meaning of Section 16(b)27A of the Securities Act of 1933, as amended (the “Securities Act”), and Section 21E of the Securities Exchange Act of 1934, as amended.amended (the “Exchange Act”), and the Company intends that such forward-looking statements be subject to the safe harbors created thereby. These forward-looking statements, which can be identified by the use of words such as “may,” “will,” “expect,” “anticipate,” “estimate,” or “continue,” or variations thereon or comparable terminology, include but are not limited to, statements about the plans and objectives of management for future operations, including plans and objectives relating to the products and future performance of the Company; projections of our future financial performance and demand for our products; the anticipated impacts from the COVID-19 pandemic on the Company, including to our business, results of operations, cash flows and financial position, as well as our future responses to the COVID-19 pandemic; and our plans or expectations with relating to our agreement with BioCheck, Inc. (“BioCheck”). In addition, all statements other than statements of historical facts that address activities, events, or developments the Company expects, believes, or anticipates will or may occur in the future, and other such matters, are forward-looking statements.

The forward-looking statements included herein are based on current expectations that involve a number of risks and uncertainties, including the duration and severity of the COVID-19 pandemic and its ultimate effect on our business, results of operations, cash flows and financial position, as well as our ability (or inability) to execute on our plans to respond to the COVID-19 pandemic. These forward-looking statements are also based on assumptions that the Company will retain key management personnel, the Company will be successful in the commercialization of the Accelerate Pheno® system, the Company will obtain sufficient capital to commercialize the Accelerate Pheno system and continue development of complementary products, the Company will be able to protect its intellectual property, the Company’s ability to respond to technological change, the Company will accurately anticipate market demand for the Company’s products and there will be no material adverse change in the Company’s operations or business. Assumptions relating to the foregoing involve judgments with respect to, among other things, future economic, competitive and market conditions and future business decisions, all of which are difficult or impossible to predict accurately and many of which are beyond the control of the Company. Although the Company believes that the assumptions underlying the forward-looking statements are reasonable, any of the assumptions could prove inaccurate and, therefore, there can be no assurance that the results contemplated in forward-looking statements will be realized. Any forward-looking statements made by us in this Form 10-Q speak only as of the date on which they are made. We undertake no obligation to publicly update or revise any forward-looking statements, whether as a result of new information, future events or otherwise.

The following Management’s Discussion and Analysis of Financial Condition and Results of Operations (“MD&A”) summarizes the significant factors affecting our results of operations, liquidity, capital resources and contractual obligations. The following discussion and analysis should be read in conjunction with the Company’s unaudited condensed consolidated financial statements and related notes included elsewhere herein. Certain information contained in the discussion and analysis set forth below and elsewhere in this report, including information with respect to our plans and strategy for our business and related financing, includes forward-looking statements that involve risks and uncertainties. The Company’s future operating results may be affected by various trends and factors which are beyond the Company’s control. These include, among other factors, general public perception of issues and solutions, and other uncertain business conditions that may affect the Company’s business. The Company recognizedcautions the reader that a number of important factors discussed herein, and in other reports filed with the SEC including but not limited to the risks in the section entitled “Risk Factors” in the Company's Annual Report on Form 10-K for the year ended December 31, 2019, the section entitled "Risk Factor” in this Form 10-Q and in the Company's subsequent filings with the SEC, could affect the Company’s actual results and cause actual results to differ materially from those discussed in forward-looking statements.
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All amounts in the MD&A have been rounded to the nearest thousand unless otherwise indicated.

Overview

Accelerate Diagnostics, Inc. (“Accelerate”) is an in vitro diagnostics company dedicated to providing solutions that improve patient outcomes and lower healthcare costs through the rapid diagnosis of serious infections. Microbiology laboratories are in need of new tools to address what the U.S. Centers for Disease Control and Prevention (the “CDC”) calls one of the most serious healthcare threats of our time, antibiotic resistance. A significant contributing factor to the rise of resistance is the overuse and misuse of antibiotics, which is exacerbated by a lack of timely diagnostic results. The delay of identification and antibiotic susceptibility results is often due to the reliance by microbiology laboratories on traditional culture-based tests that often take two to three days to complete. Our technology platform is built to address these challenges by delivering significantly faster testing of infectious pathogens in various patient sample types.

Our first system to address these challenges is the Accelerate Pheno system. The Accelerate Pheno system utilizes genotypic technology to identify (“ID”) infectious pathogens and phenotypic technology to conduct antibiotic susceptibility testing (“AST”), which determines whether live bacterial and fungal cells are resistant or susceptible to a particular antimicrobial. The Accelerate PhenoTest® BC Kit, which is the first test kit for the system, provides ID and AST results for patients suspected of bacteremia or fungemia, both life-threatening conditions with high morbidity and mortality risk. This information is used to rapidly modify antibiotic therapy to lessen side-effects, improve clinical outcomes, and help preserve the useful life of antibiotics.

On June 30, 2015, we declared our conformity to the European In Vitro Diagnostic Directive 98/79/EC and applied a CE Mark to the Accelerate Pheno system and the Accelerate PhenoTest BC Kit for in vitro diagnostic use. On February 23, 2017, the U.S. Food and Drug Administration (“FDA”) granted our de novo request to market our Accelerate Pheno system and Accelerate PhenoTest BC Kit.

In 2017, we began selling the Accelerate Pheno system in hospitals in the United States, Europe, and the Middle East. Consistent with the Company's “razor” / “razor-blade” business model, revenues to date have principally been generated from the sale of the instruments and the sale of single use consumable test kits.

In 2019, based upon our initial experience selling and implementing the Accelerate Pheno system, we implemented initiatives to improve and refine our commercial execution and to re-engineer our product implementation processes. Improving our commercial and implementation capabilities remains an emphasis going forward, along with geographic expansion and product innovation.

On April 13, 2020 we signed a non-exclusive agreement with BioCheck to sell MS-FAST, a fully-automated chemiluminescence immunoassay analyzer, along with BioCheck’s SARS-CoV-2 tests for the detection of IgG and IgM antibodies (“BioCheck COVID-19 Serology Test”) in North America, Europe and the Middle East. We expect to begin sellling the BioCheck COVID-19 Serology Test in the second quarter of 2020. We will pay BioCheck a pre-defined price for the sale of each BioCheck COVID-19 Serology Test device and assay. The BioCheck COVID-19 Serology Test has a CE Mark and FDA regulatory approval is pending. In Europe we plan to obtain the BioCheck products directly through BioCheck's related partyentity, Sophonix Limited of China. The BioCheck COVID-19 Serology Test will be the first third-party product sold by Accelerate, the first product sold by Accelerate outside bacterial infections, and will be directed at the rapidly evolving COVID-19 serology market. As such, there are uncertainties regarding market demand, market acceptance, supply constraints, FDA approval, ramp up expenditures, and other factors impacting market penetration.

COVID-19 Update

In late 2019, a novel strain of coronavirus (COVID-19) was reported to have surfaced in Wuhan, China, which has since spread globally. In March 2020, the World Health Organization declared COVID-19 a global pandemic. Further, the COVID-19 outbreak has resulted in government authorities around the world implementing numerous measures to try to reduce the spread of COVID-19, such as travel bans and restrictions, quarantines, shelter-in-place, stay-at-home or total lock-down (or similar) orders and business limitations and shutdowns. For example, the State of Arizona has implemented a stay-at-home order promoting physical distancing and limiting residents time away from their residence or property, except to conduct or participate in essential activities. The COVID-19 pandemic and these measures have caused, and are continuing to cause, business slowdowns or
30


shutdowns in affected areas, both regionally and worldwide, which have significantly impacted our business and results of operations.

For example, as a result of the pandemic, during the first quarter of 2020, our access to our customers to sell and implement the Accelerate Pheno system began to diminish as hospitals became primarily focused on the COVID-19 pandemic. By the end of the first quarter of 2020, we were largely unable to sell or implement new Accelerate Pheno systems. We are uncertain how long our access to our customers to sell and implement Accelerate Pheno systems will be limited. Further, starting in April our revenue from consumable test kits declined modestly from some of our current customers due to hospitals in many regions suspending elective surgeries and seeing lower rates of occupancy. As a result of delayed implementations of Accelerate Pheno systems, our results of operations for the first quarter of 2020 were negatively impacted.

As a medical device company, we are permitted to continue manufacturing our products at our Tucson, Arizona headquarters under the State of Arizona stay-at-home order. We are able to have staff at our office who are essential to manufacturing and shipping our products, and certain other staff who need to work in the office in order to be fully productive, while maintaining necessary social distancing practices. Our third-party manufacturing supply chain for Accelerate Pheno systems and consumable test kits remains stable. However, the economic effects of the COVID-19 pandemic remain unpredictable, and we are closely monitoring the ability of all our suppliers to provide us with materials necessary for the manufacture of Accelerate Pheno systems and consumable test kits.

Additionally, the Company has applied for and received loan proceeds of approximately $4.8 million under the Paycheck Protection Program established under the CARES Act. The proceeds from the loan may only be used for payroll costs (including benefits), interest on mortgage obligations, rent, utilities and interest on certain other debt obligations. For additional information about the loan, refer to Item 1, Note 18, Subsequent Events in this Form 10-Q.

We continue to monitor the rapidly evolving situation caused by the COVID-19 pandemic, and we may take further actions required by governmental authorities or that we determine are prudent to support the well-being of our employees, customers, suppliers, business partners and others. The degree to which the COVID-19 pandemic ultimately impacts our business, results of operations, cash flows and financial position will depend on future developments, which are highly uncertain, continuously evolving and cannot be predicted. This includes, but is not limited to, the duration and spread of the pandemic, its severity, the actions to contain the virus or treat its impact, and how quickly and to what extent normal economic and operating conditions can resume.

Accordingly, our current results and financial condition discussed herein may not be indicative of future operating results and trends. Refer to the section entitled “Risk Factors” in this Form 10-Q for additional risks we face due to the COVID-19 pandemic.

Changes in Results of Operations: Three months ended March 31, 2020 compared to three months ended March 31, 2019

Three Months Ended March 31,
(in thousands)
20202019$ Change% Change
Net sales  $2,342  $1,750  $592  34 %

For the three months ended March 31, 2020, total revenues increased as compared to the three months ended March 31, 2019 primarily due to increased sales of Accelerate PhenoTest BC Kits.

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Three Months Ended March 31,
(in thousands)
20202019$ Change% Change
Cost of sales  $1,287  $916  $371  41 %
Gross profit  $1,055  $834  $221  26 %

For the three months ended March 31, 2020, cost of sales and gross profit increased as compared to the three months ended March 31, 2019 as a result of higher sales. This increase was primarily driven by an increase in consumable inventory sales. Inventory without a cost basis was sold to customers for the three months ended March 31, 2020 and 2019. Pre-launch inventory previously not capitalized and expensed in a previous period for each of the three months ended March 31, 2020 and 2019, was $0.1 million.

Cost of sales included non-cash equity-based compensation of $0.1 million for each of the three months ended March 31, 2020 and 2019.
Three Months Ended March 31,
(in thousands)
20202019$ Change% Change
Research and development  $5,842  $6,933  $(1,091) (16)%

Research and development expenses for the three months ended March 31, 2020 decreased compared to the three months ended March 31, 2019. The decrease was primarily the result of decreases in employee non-cash equity-based compensation and reductions in external study expenditures.

Research and development expenses included non-cash equity-based compensation of $1.1 million and$1.5 million for the three months ended March 31, 2020 and 2019, respectively.

Three Months Ended March 31,
(in thousands)
20202019$ Change% Change
Sales, general and administrative  $12,943  $12,723  $220  %

Sales, general and administrative expenses for the three months ended March 31, 2020 increased as compared to the three months ended March 31, 2019. The increase was primarily the result of an increase in employee non-cash equity-based compensation, and partially offset by other discretionary items such as professional services and travel-related expenses.

Sales, general and administrative expenses included non-cash equity-based compensation of $3.0 million and $1.8 million for the three months ended March 31, 2020 and 2019, respectively. Non-cash equity-based compensation increased for the three months ended March 31, 2020 as compared to the three months ended March 31, 2019 due to larger stock option grants made to key management.

Three Months Ended March 31,
(in thousands)
20202019$ Change% Change
Loss from operations  $(17,730) $(18,822) $1,092  (6)%

For the three months ended March 31, 2020, our loss from operations decreased as compared to the three months ended March 31, 2019. The decreases were primarily the result of a decrease in research and development expenses, combined with an increase in total revenues as described above. Loss from operations included non-cash equity-based compensation of $4.2 million and $3.4 million for the three months ended March 31, 2020 and 2019, respectively. This loss and further losses are anticipated and was the result of our continued investments in sales and marketing, key research and development personnel, related costs associated with product development, and commercialization of the Company’s products.
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Three Months Ended March 31,
(in thousands)
20202019$ Change% Change
Total other expense, net  $(3,579) $(2,678) $(901) 34 %

Other expense for the three months ended March 31, 2020 increased as compared to the three months ended March 31, 2019. The increases were primarily the result of decreased interest income and increased interest expense for the three months ended March 31, 2020. For the three months ended March 31, 2020 and 2019, the Company incurred interest expense associated with our Notes of $3.7 million and $3.5 million, respectively. These amounts were partially offset by investment income of $0.4 million and $0.8 million for the three months ended March 31, 2020 and 2019, respectively.

Three Months Ended March 31,
(in thousands)
20202019$ Change% Change
Provision for income taxes  $—  $(221) $221  NM

NM indicates percentage is not meaningful

For the three months ended March 31, 2020, the Company did not carry an income tax provision amount as the Company does not recognize tax benefits from current year tax losses in the U.S. and other foreign jurisdictions. For the three months ended March 31, 2019, the Company recorded tax provisions related to tax liabilities generated by our foreign subsidiaries for international income taxes.

Capital Resources and Liquidity

Our primary source of liquidity has been from sales of shares of common stock and the issuance of our convertible notes. As of March 31, 2020, the Company had $92.0 million in cash and cash equivalents and available-for-sale securities, a decrease of $16.4 million from $108.5 million at December 31, 2019. The primary reason for the decrease was due to cash used in operations during the period.

The Company is subject to lease agreements. The future minimum lease payments under these lease agreements are included in Item 1, Note 15, Leases.

As of March 31, 2020, management believes that current cash balances will be sufficient to fund our capital and liquidity needs for the next twelve months.

Our primary use of capital has been for the commercialization and development of the Accelerate Pheno system. We believe our capital requirements will continue to be met with our existing cash balance and those provided by revenue, grants, exercises of stock options and/or additional issuance of equity or debt securities. However, if capital requirements vary materially from those currently planned, we may require additional capital sooner than expected. There can be no assurance that such capital will be available in sufficient amounts or on terms acceptable to us, if at all. Additional issuances of equity or convertible debt securities will result in dilution to our current common stockholders.

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Summary of Cash Flows

The following summarizes selected items in the Company’s condensed consolidated statements of cash flows for the three months ended March 31, 2020 and 2019:

Cash Flow Summary
Three Months Ended March 31,
(in thousands)
20202019$ Change
Net cash used in operating activities$(17,597) $(19,505) $1,908  
Net cash (used in) provided by investing activities(5,356) 24,799  (30,155) 
Net cash provided by financing activities1,429  3,816  (2,387) 

Cash flows from operating activities

The net cash used in operating activities was $17.6 million and $19.5 million for the three months ended March 31, 2020 and 2019, respectively. Net cash used in operating activities was primarily the result of net losses offset by equity-based compensation and amortization of debt discount and issuance costs. These losses are the result of continued investments in research and development, sales and marketing, along with other factors. A decrease in our net loss offset by changes in working capital resulted in a decrease in cash used in operating activities for the three months ended March 31, 2020 compared to the prior year period.

Cash flows from investing activities

The net cash used in investing activities was $5.4 million for the three months ended March 31, 2020. During the three months ended March 31, 2020, the Company purchased marketable securities of $21.6 million, which were offset in part by maturities of marketable securities of $16.7 million. The net cash provided by investing activities was $24.8 million for the three months ended March 31, 2019. During the three months ended March 31, 2019, the Company had proceeds from sales and maturities of marketable securities of $37.7 million, which were offset in part by purchases of marketable securities of $12.8 million.

The Company had an increase in marketable securities purchases during the three months ended March 31, 2020 compared to the three months ended March 31, 2019, due to the Company liquidating a portion of its money market funds carried as cash and cash equivalents as of December 31, 2019, and reinvesting these balances in debt securities available-for-sale during the three months ended March 31, 2020. The Company had larger proceeds from sales and maturities of marketable securities for the three months ended March 31, 2019 compared to the three months ended March 31, 2020 due to the Company carrying larger balance of debt securities available-for-sale during the three months ended March 31, 2019.

Cash flows from financing activities

The net cash provided by financing activities was $1.4 million and $3.8 million for the three months ended March 31, 2020 and 2019, respectively. These balances are comprised of proceeds from exercises of stock options. For the three months ended March 31, 2020 the Company had a decrease in proceeds from option exercises due to a lower average price of options exercised.

Convertible Notes

On March 27, 2018, the Company issued $150.0 million aggregate principal amount of 2.50% Convertible Senior Notes (“Notes”). In connection with the offering of the Notes, the Company granted the initial purchasers of the Notes a 13-day option to purchase up to an additional $22.5 million aggregate principal amount of the Notes on the same terms and conditions. On April 4, 2018 the option was partially exercised, which resulted in $21.5 million of additional proceeds, for total proceeds of $171.5 million. The Notes mature on March 15, 2023, unless earlier repurchased or converted into shares of common stock subject to certain conditions. The Notes are convertible into shares of the Company’s common stock, can be repurchased for cash, or a combination thereof, at the Company’s election, at an initial conversion rate of 32.3428 shares of common stock per $1,000 principal amount of the Notes, which is equivalent to an initial conversion price of approximately $30.92 per share of common stock, subject to
34


adjustment. We pay interest on the Notes semi-annually in arrears on March 15 and September 15 of each year with interest payments beginning on September 15, 2018. Proceeds received from the issuance of the Notes were allocated between long-term debt (the “liability component”) and contributed capital (the “equity component”), within the condensed consolidated balance sheet. The fair value of the liability component was measured using rates determined for similar debt instruments without a conversion feature. For additional information about the Notes, refer to Item 1, Note 10, Convertible Notes in this Form 10-Q.

In connection with the offering, we entered into a prepaid forward stock repurchase transaction (the “Prepaid Forward”) with a financial institution. Pursuant to the Prepaid Forward, we used approximately $45.1 million of the proceeds from the offering of the Notes to pay the prepayment amount. The aggregate number of our common stock underlying the Prepaid Forward is approximately 1,858,500 shares (based on the sale price of $24.25). The expiration date for the Prepaid Forward is March 15, 2023, although it may be settled earlier in whole or in part. Upon settlement of the Prepaid Forward, at expiration or upon any early settlement, the Forward Counterparty will deliver to us the number of shares of common stock underlying the Prepaid Forward or the portion thereof being settled early. The shares purchased under the Prepaid Forward were treated as treasury stock on the condensed consolidated balance sheet.sheet (and not outstanding for purposes of the calculation of basic and diluted earnings per share), but remain outstanding for corporate law purposes, including for purposes of any future stockholders' votes, until the Forward Counterparty delivers the shares underlying the Prepaid Forward to us.



Contractual Obligations

There have been no material changes in our reported contractual obligations, as described under “Contractual Obligations” in “Management’s Discussion and Analysis of Financial Condition and Results of Operations” in Part II, Item 7 of our Annual Report on Form 10-K for the year ended December 31, 2019.

Off-Balance Sheet Arrangements

We did not have any off-balance sheet arrangements as of March 31, 2020.

Critical Accounting Policies and Estimates

Our discussion and analysis of our financial condition and results of operations are based upon our unaudited condensed consolidated financial statements, which have been prepared in accordance with U.S. GAAP. The preparation of these financial statements requires us to make certain estimates and judgments that affect the reported amounts of assets, liabilities, revenues and expenses. We evaluate our estimates on an ongoing basis, including those related to accounts receivable, inventories, property and equipment, intangible assets, accruals, warranty liabilities, tax valuation accounts and stock-based compensation. We base our estimates on historical experience and on various other assumptions we believe to be reasonable under the circumstances, the results of which form the basis for making judgments about the carrying values of assets and liabilities and are not readily apparent from other sources. Actual results may differ from these estimates. Our critical accounting policies and estimates are discussed in our Annual Report on Form 10-K for the fiscal year ended December 31, 2019. There have been no material changes to our critical accounting policies and estimates during the three months ended March 31, 2020.


Item 3. Quantitative and Qualitative Disclosures About Market Risk

Interest Rate Risk

Our investment portfolio is exposed to market risk from changes in interest rates. The fair market value of fixed rate securities may be adversely impacted by fluctuations in interest rates while income earned on floating rate securities may decline as a result of decreases in interest rates. We have historically maintained a relatively short average maturity for our investment portfolio, and we believe a hypothetical 100 basis point adverse move in interest rates along the entire interest rate yield curve would change the fair value of our interest sensitive financial instruments by approximately $0.1 million as of March 31, 2020 and $0.3 million as of December 31, 2019.

Under our current policies, we do not use interest rate derivative instruments to manage exposure to interest rate changes. We attempt to ensure the safety and preservation of our invested principal funds by limiting
35


default risk, market risk and reinvestment risk. The goals of our investment policy are preservation of capital, fulfillment of liquidity needs and fiduciary control of cash and investments. We also seek to maximize income from our investments without assuming significant risk. To achieve our goals, we maintain a portfolio of cash equivalents and investments in a variety of securities that management believes to be of high credit quality. Further information regarding our investments is included in Item 1, Note 5, Investments in this Form 10-Q.

Although the Company’s Notes are based on a fixed rate, changes in interest rates could impact the fair market value of the Notes. As of March 31, 2020, the fair market value of the Notes was $93.5 million. For additional information about the Notes, refer to Item 1, Note 10, Convertible Notes in this Form 10-Q.

Foreign Currency Risk

We operate primarily in the United States and a majority of our cost, expense and capital purchasing activities for the three months ended March 31, 2020 were transacted in U.S. dollars. As a corporation with international and domestic operations, we are exposed to changes in foreign exchange rates. Our international revenue is predominantly in Europe and the Middle East and is denominated in Euros and United States dollars. In our international operations, we pay payroll and other expenses in local currencies. Our exposures to foreign currency risks may change over time and could have a material adverse impact on our financial results.


Item 2. Management’s Discussion and Analysis of Financial Condition and Results of Operations

Introductory Note

Except as otherwise indicated by the context, references in this Quarterly Report on Form 10-Q (this “Form 10-Q”) to the “Company,” “Accelerate,” “we," “us” or “our” are references to the combined business of Accelerate Diagnostics, Inc.


Forward-Looking Statements

This Form 10-Q contains certain forward-looking statements within the meaning of Section 27A of the Securities Act of 1933, as amended (the “Securities Act”) and Section 21E of the Securities Exchange Act of 1934, as amended (the “Exchange Act”), and the Company intends that such forward-looking statements be subject to the safe harbors created thereby. These forward-looking statements, which can be identified by the use of words such as “may,” “will,” “expect,” “anticipate,” “estimate,” or “continue,” or variations thereon or comparable terminology, include the plans and objectives of management for future operations, including plans and objectives relating to the products and future economic performance of the Company. In addition, all statements other than statements of historical facts that address activities, events, or developments the Company expects, believes, or anticipates will or may occur in the future, and other such matters, are forward-looking statements.

The forward-looking statements included herein are based on current expectations that involve a number of risks and uncertainties. These forward-looking statements are based on assumptions that the Company will retain key management personnel, the Company will be successful in the commercialization of the Accelerate Pheno™ system, the Company will obtain sufficient capital to commercialize the Accelerate Pheno™ system and continue development of complementary products, the Company will be able to protect its intellectual property, the Company’s ability to respond to technological change, that the Company will accurately anticipate market demand for the Company’s products and that there will be no material adverse change in the Company’s operations or business. Assumptions relating to the foregoing involve judgments with respect to, among other things, future economic, competitive and market conditions and future business decisions, all of which are difficult or impossible to predict accurately and many of which are beyond the control of the Company. Although the Company believes that the assumptions underlying the forward-looking statements are reasonable, any of the assumptions could prove inaccurate and, therefore, there can be no assurance that the results contemplated in forward-looking statements will be realized. We undertake no obligation to publicly update or revise any forward-looking statements, whether as a result of new information, future events or otherwise.

The following Management’s Discussion and Analysis of Financial Condition and Results of Operations (“MD&A”) summarizes the significant factors affecting our results of operations, liquidity, capital resources and


contractual obligations. The following discussion and analysis should be read in conjunction with the Company’s unaudited condensed consolidated financial statements and related notes included elsewhere herein. Certain information contained in the discussion and analysis set forth below and elsewhere in this report, including information with respect to our plans and strategy for our business and related financing, includes forward-looking statements that involve risks and uncertainties. The Company’s future operating results may be affected by various trends and factors which are beyond the Company’s control. These include, among other factors, general public perception of issues and solutions, and other uncertain business conditions that may affect the Company’s business. The Company cautions the reader that a number of important factors discussed herein, and in other reports filed with the SEC including but not limited to the risks in the section entitled “Risk Factors” in its Annual Report on Form 10-K for the period ended December 31, 2016, could affect the Company’s actual results and cause actual results to differ materially from those discussed in forward-looking statements.

Our MD&A is composed of the following sections: Overview, Changes in Results of Operations, Capital Resources and Liquidity and Off-Balance Sheet Arrangements. All amounts have been rounded to the nearest thousand unless otherwise indicated.

Overview

Accelerate Diagnostics, Inc. is an in vitro diagnostics company dedicated to providing solutions that improve patient outcomes and lower healthcare costs through the rapid diagnosis of serious infections. Microbiology laboratories are in need of new tools to address what the U.S. Centers for Disease Control and Prevention calls one of the most serious healthcare threats of our time, antibiotic resistance. A significant contributing factor to the rise of resistance is the overuse and misuse of antibiotics, which is exacerbated by a lack of timely diagnostic results. The delay of these results is often due to the reliance by microbiology laboratories on traditional culture-based tests that often take two to three days to complete. Our technology platform is built to address these challenges by delivering significantly faster and accurate testing of infectious pathogens in various patient sample types.

Since 2004, we have focused our efforts on research into and the development of an innovative rapid diagnostic platform, the Accelerate Pheno™ system, intended for the rapid diagnosis of infectious pathogens. Our goal is to reduce the failure rate of initial antibiotic drug therapy by shortening lab turnaround time to hours rather than the two to three days now required to deliver identification and susceptibility results.

The Accelerate Pheno™ system utilizes genotypic technology to identify, or “ID,” infectious pathogens and phenotypic technology to conduct antibiotic susceptibility testing, or “AST,” which determines whether live bacterial or fungal cells are resistant or susceptible to a particular antimicrobial agent. The Accelerate PhenoTest™ BC Kit provides ID and AST results for patients suspected of bacteremia or fungemia, both life-threatening conditions with high morbidity and mortality risk. The Accelerate PhenoTest™ BC Kit is a highly multiplexed panel targeting over 80% of the routine and significant pathogens causing blood stream infections and over 90% of the antibiotics useful in treating those pathogens.

On June 30, 2015, we declared our conformity to the European In Vitro Diagnostic Directive 98/79 EC and applied a CE Mark to the Accelerate Pheno™ system and the Accelerate PhenoTest™ BC Kit for in vitro diagnostic use. On February 23, 2017, the FDA granted our de novo request to market our Accelerate Pheno™ system and Accelerate PhenoTest™ BC Kit in the United States. The Accelerate PhenoTest™ BC kit includes 140 assays for both identification and susceptibility testing, of which 116 were cleared by the FDA and 24 assays are available in a Research Use Only mode of the software.

Changes in Results of Operations: Three and nine months ended September 30, 2017 compared to three and nine months ended September 30, 2016

 Three Months Ended Nine Months Ended
 September 30, September 30,
 (in thousands) (in thousands)
 20172016$ Change% Change 20172016$ Change% Change
Net sales$828
$24
$804
3,350% $2,058
$207
$1,851
894%



For the three and nine months ended September 30, 2017, total revenues increased due to sales of Accelerate Pheno™ systems and Accelerate PhenoTest™ BC kits.

 Three Months Ended Nine Months Ended
 September 30, September 30,
 (in thousands) (in thousands)
 20172016$ Change% Change 20172016$ Change% Change
Cost of sales$191
$
$191
100% $352
$
$352
100%
Gross Profit$637
$24
$613
2,554% $1,706
$207
$1,499
724%

For the three and nine months ended September 30, 2017, cost of sales and gross profit increased as a result of the Company capitalizing inventory in connection with the FDA granting Accelerate’s de novo request to market the Accelerate Pheno™ system and Accelerate PhenoTest™ BC kit.

Inventory without a cost basis was sold to customers during the three and nine months ended September 30, 2017. This inventory was comprised of pre-launch inventory previously not capitalized, and expensed in a previous period. Cost of sales associated with this inventory during the three and nine months ended September 30, 2017, would have been an additional $244,000 and $611,000, respectively.

 Three Months Ended Nine Months Ended
 September 30, September 30,
 (in thousands) (in thousands)
 20172016$ Change% Change 20172016$ Change% Change
Research and development$6,351
$7,874
$(1,523)(19)% $16,166
$23,974
$(7,808)(33)%

Research and development expenses for the three and nine months ended September 30, 2017, decreased as compared to the same periods in the prior year as a result of clinical trial expenses not recurring in the current periods. Additionally, on January 1, 2017, the regulatory review process had progressed to a point that objective and persuasive evidence of approval was sufficiently probable, and a future economic benefit existed for the Accelerate Pheno™ system and Accelerate PhenoTest™ BC kit. As a result, the Company started capitalizing pre-launch inventory for the Accelerate Pheno™ system and Accelerate PhenoTest™ BC kit on January 1, 2017. Prior to January 1, 2017, all pre-launch inventory was not capitalized, because a future economic benefit couldn’t be asserted.

Pre-launch inventory not capitalized in accordance with U.S. GAAP, which included instruments and consumables charged to research and development were $225,000 and $795,000 for the three months ended September 30, 2017 and 2016, respectively, and $376,000 and $3.9 million for the nine months ended September 30, 2017 and 2016, respectively.

Research and development expenses include non-cash equity-based compensation of $1.0 million and $504,000 for the three months ended September 30, 2017 and 2016, respectively, and $2.9 million and $1.2 million for the nine months ended September 30, 2017 and 2016, respectively. The increase in non-cash equity-based compensation was primarily driven by an increase in the number of employees and stock option grants.

 Three Months Ended Nine Months Ended
 September 30, September 30,
 (in thousands) (in thousands)
 20172016$ Change% Change 20172016$ Change% Change
Sales, general and administrative$11,601
$9,566
$2,035
21% $33,589
$26,710
$6,879
26%



Sales, general and administrative expenses for the three and nine months ended September 30, 2017, increased due to an increase in salaries and related expenses as we ramp up our sales and marketing operations globally.

Pre-launch inventory not capitalized in accordance with U.S. GAAP, which included instruments and consumables charged to sales, general and administrative expenses were $11,000 and $1.2 million for the three months ended September 30, 2017 and 2016, respectively, and $40,000 and $2.5 million for the nine months ended September 30, 2017 and 2016, respectively.

Sales, general and administrative expenses include non-cash equity-based compensation of $2.5 million and $2.2 million for the three months ended September 30, 2017 and 2016, respectively, and $8.0 million and $5.4 million for the nine months ended September 30, 2017 and 2016, respectively. The increase in non-cash equity-based compensation was primarily driven by an increase in the number of employees and stock option grants.

 Three Months Ended Nine Months Ended
 September 30, September 30,
 (in thousands) (in thousands)
 20172016$ Change% Change 20172016$ Change% Change
Loss from operations$(17,315)$(17,416)$101
(1)% $(48,049)$(50,477)$2,428
(5)%

For the three and nine months end September 30, 2017, loss from operations decreased as a result of the Company capitalizing inventory in connection with the FDA granting Accelerate’s de novo request to market the Accelerate Pheno™ system and Accelerate PhenoTest™ BC kit.

Loss from operations include non-cash equity-based compensation of $3.5 million and $2.7 million for the three months ended September 30, 2017 and 2016, respectively, and $11.0 million and $6.6 million for the nine months ended September 30, 2017 and 2016, respectively. This loss and further losses are anticipated and was the result of our continued investments in research and development, expanded laboratory and operational space, increased employee headcount and other factors as we develop and commercialize the Company’s products.

 Three Months Ended Nine Months Ended
 September 30, September 30,
 (in thousands) (in thousands)
 20172016$ Change% Change 20172016$ Change% Change
Total other income$285
$117
$168
144% $536
$238
$298
125%

Other non-operating income during the three and nine months ended September 30, 2017, increased due to an increase in interest and dividends, which were offset by other components of other income.

 Three Months Ended Nine Months Ended
 September 30, September 30,
 (in thousands) (in thousands)
 20172016$ Change% Change 20172016$ Change% Change
Provision from income taxes$(45)$
$(45)100% $(220)$
$(220)100%

Due to net losses incurred, we have only recorded tax provisions related to tax liabilities generated by our foreign subsidiaries.
Capital Resources and Liquidity

Our primary source of liquidity has been from sales of shares of common stock. As of September 30, 2017, the Company had $121.3 million in cash and cash equivalents and available-for-sale securities, an increase of $43.6


million from $77.8 million at December 31, 2016. The primary reason for the change in these assets was a public offering that occurred during the nine months ended September 30, 2017.

The Company is subject to lease agreements. The future minimum lease payments under theses lease agreements is included in Item 1, Note 16, Commitments.

As of September 30, 2017, management believes that current cash balances will be more than sufficient to fund our capital and liquidity needs for the next twelve months.

The following summarizes selected items in the Company’s consolidated statements of cash flows for the nine months ended September 30, 2017, and 2016:

Cash Flow Summary
(in thousands)
 Nine Months Ended 
 September 30,September 30,Increase (Decrease)
 20172016
Net cash used in operating activities$(42,498)$(40,607)$(1,891)
Net cash used in investing activities(30,907)(52,215)21,308
Net cash provided by financing activities88,303
983
87,320

The net cash used in operating activities was $42.5 million and $40.6 million for the nine months ended September 30, 2017, and 2016, respectively. These losses are the result of our continued investments in research and development, expanded laboratory and operational space, increased employee headcount and other factors as we develop and prepare to commercialize the Company’s products.

The net cash used in investing activities was $30.9 million for the nine months ended September 30, 2017, and is primarily comprised of purchases of available-for-sales securities, offset by sales and maturities of available-for-sale securities. Net cash used in investing activities was $52.2 million for the nine months ended September 30, 2016, and is primarily comprised of purchases of available-for-sale investments, offset by sales and maturities of available-for-sale investments.

The net cash provided by financing activities was $88.3 million for the nine months ended September 30, 2017, and is primarily comprised of proceeds from a public offering. The net cash provided by financing activities was $983,000 for the nine months ended September 30, 2016, and was primarily comprised of the recovery of short swing profits from related parties, offset by common stock issuance cost and the exercise of options and warrants.

Our primary use of capital has been for development and commercialization of the Accelerate Pheno™ system. We believe our capital requirements will continue to be met with our existing cash balance and those provided under grants, exercises of warrants and stock options and/or additional issuance of equity or debt securities. However, if capital requirements vary materially from those currently planned, we may require additional capital sooner than expected. There can be no assurance that such capital will be available in sufficient amounts or on terms acceptable to us, if at all. Additional issuances of equity or convertible debt securities will result in dilution to our current common stockholders.

Off-Balance Sheet Arrangements

We did not have any off-balance sheet arrangements as of September 30, 2017.


Item 3. Quantitative and Qualitative Disclosures

Interest Rate Risk

Our investment portfolio is exposed to market risk from changes in interest rates. The fair market value of fixed rate securities may be adversely impacted by fluctuations in interest rates while income earned on floating rate


securities may decline as a result of decreases in interest rates. We have historically maintained a relatively short average maturity for our investment portfolio, and we believe a hypothetical 100 basis point adverse move in interest rates along the entire interest rate yield curve would change the fair value of our interest-sensitive financial instruments by approximately $789,000.
Under our current policies, we do not use interest rate derivative instruments to manage exposure to interest rate changes. We attempt to ensure the safety and preservation of our invested principal funds by limiting default risk, market risk and reinvestment risk. The goals of our investment policy are preservation of capital, fulfillment of liquidity needs and fiduciary control of cash and investments. We also seek to maximize income from our investments without assuming significant risk. To achieve our goals, we maintain a portfolio of cash equivalents and investments in a variety of securities that management believes to be of high credit quality. Further information regarding our investments is included in Item 1, Note 6, Investments.


Item 4. Controls and Procedures


Evaluation of Disclosure Controls and Procedures


Based on an evaluation under the supervision and with the participation of the Company’s management, the Company’s Principal Executive Officer and Principal Financial Officer have concluded that the Company’s disclosure controls and procedures as(as defined in Rules 13a-15(e) and 15d-15(e) under the Exchange ActAct) were effective as of September 30, 2017,March 31, 2020, to ensure that information required to be disclosed by the Company in reports that it files or submits under the Exchange Act is (i) recorded, processed, summarized and reported within the time periods specified in the SEC’s rules and forms and (ii) accumulated and communicated to the Company’s management, including its Principal Executive Officer and Principal Financial Officer, as appropriate to allow timely decisions regarding required disclosure.


Changes in Internal Control Over Financial Reporting


During the nine months ended September 30, 2017,There was no change in connection with the Company’s preparationsinternal control over financial reporting (as defined in Rules 13a-15(f) and 15d-15(f) under the Exchange Act) during the quarter ended March 31, 2020 that materially affected, or is reasonably likely to commercializematerially affect, the Accelerate Pheno™ system and Accelerate PhenoTest™ BC Kit the Company implemented additionalCompany’s internal controls related to revenue recognition and inventory.control over financial reporting.

36


PART II - OTHER INFORMATION


Item 1. Legal Proceedings


On March 19, 2015,We are from time to time subject to various claims and legal actions in the ordinary course of our business. We believe that there are currently no claims or legal actions that would reasonably be expected to have a putative securities class action lawsuit was filed against Accelerate Diagnostics, Inc., Lawrence Mehren, and Steve Reichling, Rapp v. Accelerate Diagnostics, Inc., et al., U.S. District Court, Districtmaterial adverse effect on our results of Arizona, 2:2015-cv-00504. The complaint alleges that we violated Sections 10(b) and 20(a) of the Securities Exchange Act of 1934 and SEC Rule 10b-5, by making falseoperations or misleading statements about our Accelerate Pheno™ system, formerly called the BACcel System. Plaintiff purports to bring the action on behalf of a class of persons who purchased or otherwise acquired our stock between March 7, 2014, and February 17, 2015. On June 9, 2015, Julia Chang was appointed Lead Plaintiff of the purported class. On June 23, 2015, Plaintiff filed an amended complaint alleging violations of Sections 10(b) and 20(a) of the Securities Exchange Act of 1934 and Rule 10b-5, by making false or misleading statements or omissions about our ID/AST System and by allegedly employing schemes to defraud. Plaintiff sought certification of the action as a class action, compensatory damages for the class in an unspecified amount, legal fees and costs, and such other relief as the court may order. Defendants moved to dismiss the amended complaint on July 21, 2015. The Court granted the motion and dismissed the case with prejudice on January 28, 2016. On February 26, 2016, Plaintiff filed a notice of appeal with the United States Court of Appeals for the Ninth Circuit, which challenges the dismissal of the amended complaint. Chang v. Accelerate Diagnostics, Inc., et al., No. 2:15-CV-00504-SPL (9th Cir. filed Feb. 26, 2016). On September 13, 2017, Plaintiff voluntarily dismissed the appeal and the case has been dismissed with prejudice.financial condition.




Item 1A. Risk Factors




There have been no material changesIn addition to the risk factors that were disclosedother information set forth in this Form 10-Q, you should carefully consider the risks discussed in the Company’ssection entitled “Risk Factors” in our Annual Report on Form 10-K for the fiscal year ended December 31, 2016.2019 and the risks relating to the impact of the COVID-19 pandemic described below. The risks described in our Annual Report on Form 10-K for the year ended December 31, 2019 and below are not the only risks facing the Company. Additional risks and uncertainties not currently known to us or that we currently deem to be immaterial may also materially adversely affect our business, results of operations, cash flows and financial position.


Additional Risk Related to Our Business and Strategy


The COVID-19 pandemic has had, and is expected to continue to have, a significant adverse impact on our commercial operations and also exposes our business to other risks.

In late 2019, a novel strain of coronavirus (COVID-19) was reported to have surfaced in Wuhan, China, which has since spread globally. In March 2020, the World Health Organization declared COVID-19 a global pandemic. Further, the COVID-19 outbreak has resulted in government authorities around the world implementing numerous measures to try to reduce the spread of COVID-19, such as travel bans and restrictions, quarantines, shelter-in-place, stay-at-home, or total lock-down (or similar) orders and business limitations and shutdowns. For example, the State of Arizona has implemented a stay-at-home order promoting physical distancing and limiting residents time away from their residence or property, except to conduct or participate in essential activities. The COVID-19 pandemic and these measures have caused, and are continuing to cause, business slowdowns or shutdowns in affected areas, both regionally and worldwide, which have significantly impacted our business and results of operations, starting in the first quarter of 2020. For example, this included diminished access to our customers, including hospitals, which has severely limited our ability to sell or implement the Accelerate Pheno systems, as well as a modestly negative impact to the demand for our consumable test kits beginning in April 2020. For additional information, refer to “—COVID-19 Update” in Part I, Item 2 of this Form 10-Q.

In addition to the negative impact on new sales and implementations of the Accelerate Pheno system and to demand for our consumable test kits, the pandemic exposes our business, operations, and workforce to a variety of other risks, including:

delays in product development or reductions in manufacturing production as a result of inventory shortages, supply chain shortages, or diversion of our efforts and resources to projects related to COVID-19;

increased expenses resulting from our COVID-19 BioCheck serology initiative;

regulatory approval delays due to regulators being overwhelmed reviewing COVID-19 related medical devices and drugs;

increased regulatory restrictions or continued market volatility could hinder our ability to execute strategic business activities, as well as negatively impact our stock price;

significant disruption of global financial markets, which could cause fluctuations in currency exchange rates or negatively impact our ability to access capital markets;

inability to access capital markets on terms that are not significantly detrimental to our business because our revenue growth rate has slowed due to our inability to sell and implement the Accelerate Pheno system as forecasted prior to the pandemic at a stage in our maturation when we are cash flow negative and have significant indebtedness in the form of convertible senior notes;
37



negative impact on our workforce productivity, product development, and research and development due to difficulties resulting from our personnel working remotely; and

illnesses to key employees, or a significant portion of our workforce, which may result in inefficiencies, delays, and disruptions in our business;

Any of these developments may adversely affect our business, harm our reputation, or result in legal or regulatory actions against us.

The potential effects of COVID-19 may also impact many of our other risk factors discussed in in Part I, Item 1A, Risk Factors, in our Annual report on Form 10-K for the year ended December 31, 2019. The degree to which COVID-19 ultimately impacts our business, results of operations, cash flows and financial position will depend on future developments, which are highly uncertain, continuously evolving and cannot be predicted, including, but not limited to, the duration and spread of the COVID-19 outbreak, its severity, the actions to contain the virus or treat its impact and how quickly and to what extent normal economic and operating conditions can resume.


Item 2. Unregistered Sales of Equity Securities and Use of Proceeds


None.None.




Item 3. Defaults Upon Senior Securities


Not applicable.




Item 4. Mine Safety Disclosures


Not applicable.




Item 5. Other Information


None.




38




Item 6. Exhibits



Exhibit No.DescriptionFiling Information
Incorporated by reference to Appendix B to the Registrant’s Definitive Proxy Statement on Schedule 14A filed on November 13, 2012
Incorporated by reference to Exhibit A to the Registrant’s Definitive Information Statement on Schedule 14C filed on July 12, 2013
Incorporated by reference to Exhibit 3.1 to the Registrant’s Current Report on Form 8-K filed on March 15, 2016
3.1.3Incorporated by reference to Exhibit 3.1 to the Registrant’s Current Report on Form 8-K filed on May 15, 2019
3.2Incorporated by reference to Exhibit 3.2 to the Registrant’s Current Report on Form 8-K filed on August 8, 2019
10.1Incorporated by reference to Exhibit 3.2 filed with10.8 to the Registrant’s Annual Report on Form 10-K for the fiscal year ended July 31, 2012filed on February 28, 2020
10.2Incorporated by reference to Exhibit 10.1 to the Registrant's Current Report on Form 8-K filed on April 8, 2020
10.3Incorporated by reference to Exhibit 10.2 to the Registrant's Current Report on form 8-K filed on April 8, 2020
10.4Incorporated by reference to Exhibit 10.1 to the Registrant's Current Report on Form 8-K filed on April 20, 2020
31.1Filed herewith
Filed herewith
FiledFurnished herewith
101**101.INSXBRL Instance Document - the instance document does not appear in the Interactive Data File because its XBRL tags are embedded within the Inline XBRL documentFiled herewith
101**101.SCH Inline XBRL Taxonomy Extension Schema DocumentFiled herewith
101**101.CALInline XBRL Taxonomy Extension Calculation Linkbase DocumentFiled herewith
101**101.DEFInline XBRL Taxonomy Extension Definition Linkbase DocumentFiled herewith
101**101.LABInline XBRL Taxonomy Extension Label Linkbase DocumentFiled herewith
101**101.PREInline XBRL Taxonomy Extension Presentation Linkbase DocumentFiled herewith
104Cover Page Interactive Data File (formatted as Inline XBRL with applicable taxonomy extension information contained in Exhibits 101)Filed herewith


** Pursuant to applicable securities laws and regulations, we are deemed to have complied with the reporting obligation relating to the submission of interactive data files in such exhibits and are not subject to liability under any anti-fraud provisions of the federal securities laws as long as we have made a good faith attempt to comply with the submission requirements and promptly amend the interactive data files after becoming aware that the interactive data files fail to comply with the submission requirements. Users of this data are advised that, pursuant to Rule 406T, these interactive data files are deemed not filed and otherwise are not subject to liability.
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SIGNATURES


Pursuant to the requirements of Section 13 or 15(d) of the Securities Exchange Act of 1934, the registrant has duly caused this Report to be signed on its behalf by the undersigned thereunto duly authorized.


ACCELERATE DIAGNOSTICS, INC.
May 8, 2020/s/ Jack Phillips
Jack Phillips
President and Chief Executive Officer
(Principal Executive Officer)
November 7, 2017May 8, 2020/s/ Lawrence Mehren
Lawrence Mehren
President and Chief Executive Officer
(Principal Executive Officer)
November 7, 2017/s/ Steve Reichling
Steve Reichling

Chief Financial Officer
(Principal Financial and Accounting Officer)



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